>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/NT
          Length = 3010

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 52   STLGLHHSNGKTRYILFLIRNGKQDRTPSTLNCDTRC 162
            S+ G  +S G+   + FL++  K  +TP  L+ DTRC
Sbjct: 2608 SSYGFQYSPGQR--VEFLVQAWKSKKTPMGLSYDTRC 2642


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,074,883
Number of Sequences: 219361
Number of extensions: 277277
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)