Clone Name | rbasd3i21 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106210.1| Zea mays PCO090267 mRNA sequence Length = 586 Score = 387 bits (195), Expect = e-104 Identities = 243/259 (93%) Strand = Plus / Minus Query: 200 tggtgagctgcaacagcaggagctccttcggcttcctctttggccttgcgagcagcagct 259 ||||| |||||||||||||| || || || |||||||| |||||||| |||||||||||| Sbjct: 378 tggtgtgctgcaacagcaggggcaccctcagcttcctccttggccttacgagcagcagct 319 Query: 260 ctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtgg 319 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ctgatctgacgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtgg 259 Query: 320 tggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcggcagcgg 379 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tggaggcactcgagatagtcctcgcggaggaggccgcagtcggagggctggcggcagcgg 199 Query: 380 ctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttcccgttgatg 439 ||||| ||| |||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 198 ctcatgcactcgctgaactccagccagaagtcgtagcagcggcccttgttcccgttgatg 139 Query: 440 ccccacccggacgccatcg 458 ||||| ||||||||||||| Sbjct: 138 ccccagccggacgccatcg 120
>ref|XM_483740.1| Oryza sativa (japonica cultivar-group), mRNA Length = 545 Score = 347 bits (175), Expect = 2e-92 Identities = 199/207 (96%) Strand = Plus / Minus Query: 253 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactcctt 312 ||||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 300 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaactcctt 241 Query: 313 ggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcg 372 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 240 ggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtgggctggcg 181 Query: 373 gcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttccc 432 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 gcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgccccttgttccc 121 Query: 433 gttgatgccccacccggacgccatcgc 459 ||||||||||||||||||||||||||| Sbjct: 120 gttgatgccccacccggacgccatcgc 94 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gggaattattgccttgctcatagc 140 ||||||||||||||||||| |||| Sbjct: 454 gggaattattgccttgctcttagc 431
>dbj|AK121536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031D23, full insert sequence Length = 2052 Score = 347 bits (175), Expect = 2e-92 Identities = 199/207 (96%) Strand = Plus / Minus Query: 253 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactcctt 312 ||||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 294 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaactcctt 235 Query: 313 ggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcg 372 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 234 ggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtgggctggcg 175 Query: 373 gcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttccc 432 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 gcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgccccttgttccc 115 Query: 433 gttgatgccccacccggacgccatcgc 459 ||||||||||||||||||||||||||| Sbjct: 114 gttgatgccccacccggacgccatcgc 88
>dbj|AK121358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D21, full insert sequence Length = 545 Score = 347 bits (175), Expect = 2e-92 Identities = 199/207 (96%) Strand = Plus / Minus Query: 253 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactcctt 312 ||||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 300 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaactcctt 241 Query: 313 ggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcg 372 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 240 ggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtgggctggcg 181 Query: 373 gcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttccc 432 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 gcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgccccttgttccc 121 Query: 433 gttgatgccccacccggacgccatcgc 459 ||||||||||||||||||||||||||| Sbjct: 120 gttgatgccccacccggacgccatcgc 94 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gggaattattgccttgctcatagc 140 ||||||||||||||||||| |||| Sbjct: 454 gggaattattgccttgctcttagc 431
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 272 bits (137), Expect = 1e-69 Identities = 149/153 (97%) Strand = Plus / Minus Query: 307 ctccttggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggaggg 366 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 27849840 ctccttggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtggg 27849781 Query: 367 ctggcggcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgcccctt 426 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 27849780 ctggcggcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgcccctt 27849721 Query: 427 gttcccgttgatgccccacccggacgccatcgc 459 ||||||||||||||||||||||||||||||||| Sbjct: 27849720 gttcccgttgatgccccacccggacgccatcgc 27849688 Score = 79.8 bits (40), Expect = 9e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 253 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaact 308 ||||||||| | || ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 27850904 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaact 27850849 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gggaattattgccttgctcatagc 140 ||||||||||||||||||| |||| Sbjct: 27851058 gggaattattgccttgctcttagc 27851035
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 272 bits (137), Expect = 1e-69 Identities = 149/153 (97%) Strand = Plus / Minus Query: 307 ctccttggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggaggg 366 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 57918 ctccttggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtggg 57859 Query: 367 ctggcggcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgcccctt 426 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 57858 ctggcggcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgcccctt 57799 Query: 427 gttcccgttgatgccccacccggacgccatcgc 459 ||||||||||||||||||||||||||||||||| Sbjct: 57798 gttcccgttgatgccccacccggacgccatcgc 57766 Score = 79.8 bits (40), Expect = 9e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 253 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaact 308 ||||||||| | || ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 58982 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaact 58927 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gggaattattgccttgctcatagc 140 ||||||||||||||||||| |||| Sbjct: 59136 gggaattattgccttgctcttagc 59113
>ref|NM_130337.3| Arabidopsis thaliana unknown protein AT2G47690 mRNA, complete cds Length = 589 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 272 tgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggcactcg 331 |||||||||||||| ||||||||||| | || ||||| ||||| |||||||| |||||| Sbjct: 290 tgctcctccttgtatatcctgttccttctttgaaactctttggaatggtggagacactcg 231 Query: 332 aggta 336 ||||| Sbjct: 230 aggta 226
>emb|BX821932.1|CNS0A7X6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZA01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 506 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 272 tgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggcactcg 331 |||||||||||||| ||||||||||| | || ||||| ||||| |||||||| |||||| Sbjct: 170 tgctcctccttgtatatcctgttccttctttgaaactctttggaatggtggagacactcg 111 Query: 332 aggta 336 ||||| Sbjct: 110 aggta 106
>gb|AY271664.1| Gossypium barbadense fiber protein Fb14 mRNA, complete cds Length = 568 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 391 gctgaagtccagccagaagtcgtagcaccgccccttgttcccgttgatgccccacccgga 450 ||||||||| | |||||| |||||||||| || ||||| |||||||| ||||||||||| Sbjct: 111 gctgaagtcgacccagaaatcgtagcacctgcctttgttaccgttgattccccacccgga 52 Query: 451 cgccatc 457 |||||| Sbjct: 51 tgccatc 45
>gb|DQ023531.1| Gossypium hirsutum cultivar CIM707 Fb14 mRNA, complete cds Length = 252 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 391 gctgaagtccagccagaagtcgtagcaccgccccttgttcccgttgatgccccacccgga 450 ||||||||| | |||||| |||||||||| || ||||| |||||||| ||||||||||| Sbjct: 66 gctgaagtcgacccagaaatcgtagcacctgcctttgttaccgttgattccccacccgga 7 Query: 451 cgccat 456 ||||| Sbjct: 6 tgccat 1
>ref|NM_116144.2| Arabidopsis thaliana unknown protein AT3G62790 mRNA, complete cds Length = 576 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 268 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 327 |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct: 276 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 217 Query: 328 ctcgaggtagtc 339 |||||||||||| Sbjct: 216 ctcgaggtagtc 205
>gb|AY114576.1| Arabidopsis thaliana putative protein (At3g62790) mRNA, complete cds Length = 437 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 268 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 327 |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct: 189 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 130 Query: 328 ctcgaggtagtc 339 |||||||||||| Sbjct: 129 ctcgaggtagtc 118
>gb|AY062842.1| Arabidopsis thaliana putative protein (At3g62790; F26K9_220) mRNA, complete cds Length = 576 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 268 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 327 |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct: 276 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 217 Query: 328 ctcgaggtagtc 339 |||||||||||| Sbjct: 216 ctcgaggtagtc 205
>gb|AY088460.1| Arabidopsis thaliana clone 6853 mRNA, complete sequence Length = 562 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 268 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 327 |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct: 271 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 212 Query: 328 ctcgaggtagtc 339 |||||||||||| Sbjct: 211 ctcgaggtagtc 200
>emb|BX821178.1|CNS0A86O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL22ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 583 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 272 tgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggcactcg 331 |||||||||||||| || |||||||| | || ||||| || || |||||||| |||||| Sbjct: 199 tgctcctccttgtatatactgttccttctttgaaactctttagaatggtggagacactcg 140 Query: 332 aggta 336 ||||| Sbjct: 139 aggta 135
>gb|AC120051.5| Homo sapiens chromosome 8, clone RP11-809L8, complete sequence Length = 200827 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 492 cctctccttttcttctctctctcc 515 |||||||||||||||||||||||| Sbjct: 59211 cctctccttttcttctctctctcc 59234
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete sequence Length = 194872 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 492 cctctccttttcttctctctctc 514 ||||||||||||||||||||||| Sbjct: 66245 cctctccttttcttctctctctc 66223
>gb|AC139256.5| Homo sapiens chromosome 16 clone RP11-1186N24, complete sequence Length = 143783 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctctcc 515 |||||||||||||||||||||| Sbjct: 14473 tctccttttcttctctctctcc 14494
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 459 cctcttcttcttctccgccgtcgacc 484 ||||||||||||||||||||| |||| Sbjct: 84929 cctcttcttcttctccgccgtggacc 84904
>gb|L39891.1|HUMPKD1GEN Homo sapiens polycystic kidney disease-associated protein (PKD1) gene, complete cds Length = 53522 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctctcc 515 |||||||||||||||||||||| Sbjct: 18208 tctccttttcttctctctctcc 18229
>gb|U24498.1|HSU24498 Human autosomal dominant polycystic kidney disease protein 1 (PKD1) gene Length = 47934 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctctcc 515 |||||||||||||||||||||| Sbjct: 14871 tctccttttcttctctctctcc 14892
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 272 tgctcctccttgtagatcctgttcct 297 |||||||||||||| ||||||||||| Sbjct: 19421 tgctcctccttgtatatcctgttcct 19396
>ref|NG_002799.1| Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 6 (PKD1P6) on chromosome 16 Length = 29487 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctctcc 515 |||||||||||||||||||||| Sbjct: 14473 tctccttttcttctctctctcc 14494
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 459 cctcttcttcttctccgccgtcgacc 484 ||||||||||||||||||||| |||| Sbjct: 23088599 cctcttcttcttctccgccgtggacc 23088574 Score = 40.1 bits (20), Expect = 7.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 451 cgccatcgcctct-tcttcttctccgccgtcg 481 ||||||||||||| |||||||||||| ||||| Sbjct: 33906305 cgccatcgcctctctcttcttctccgacgtcg 33906274
>gb|AC092137.3| Homo sapiens chromosome 16 clone RP11-344H15, complete sequence Length = 184891 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 494 tctccttttcttctctctctcc 515 |||||||||||||||||||||| Sbjct: 101859 tctccttttcttctctctctcc 101838
>gb|AC009065.8| Homo sapiens chromosome 16 clone RP11-304L19, complete sequence Length = 199759 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctctcc 515 |||||||||||||||||||||| Sbjct: 156338 tctccttttcttctctctctcc 156359
>emb|AL512547.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0812A04, complete sequence Length = 43144 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 459 cctcttcttcttctccgccgtcgacc 484 ||||||||||||||||||||| |||| Sbjct: 9533 cctcttcttcttctccgccgtggacc 9508
>gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete sequence Length = 171888 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 aagcataagaaaaatcaaaaa 189 ||||||||||||||||||||| Sbjct: 87034 aagcataagaaaaatcaaaaa 87054
>gb|AC118201.8| Mus musculus chromosome 7, clone RP23-339M11, complete sequence Length = 194241 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 cctctccttttcttctctctc 512 ||||||||||||||||||||| Sbjct: 140538 cctctccttttcttctctctc 140518
>gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete sequence Length = 174573 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aagcataagaaaaatcaaaaa 189 ||||||||||||||||||||| Sbjct: 6630 aagcataagaaaaatcaaaaa 6610
>gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosome 17, complete sequence Length = 181002 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tgcacaaacttcatgaccagg 56 ||||||||||||||||||||| Sbjct: 78633 tgcacaaacttcatgaccagg 78613
>gb|AC117198.3| Mus musculus BAC clone RP23-127K18 from 9, complete sequence Length = 193044 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctctc 514 ||||||||||||||||||||| Sbjct: 56429 tctccttttcttctctctctc 56449
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 490 agcctctccttttcttctctctctc 514 |||||||||||||||||||| |||| Sbjct: 1093990 agcctctccttttcttctctgtctc 1093966
>gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80 of 83 of the complete sequence Length = 323775 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aagcataagaaaaatcaaaaa 189 ||||||||||||||||||||| Sbjct: 27570 aagcataagaaaaatcaaaaa 27550
>emb|AL109847.5|CNS018P0 Human chromosome 14 DNA sequence BAC R-603H7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 186158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctcc 515 ||||||||||||||||||||| Sbjct: 160262 ctccttttcttctctctctcc 160282
>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence Length = 180605 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tgcacaaacttcatgaccagg 56 ||||||||||||||||||||| Sbjct: 131266 tgcacaaacttcatgaccagg 131246
>emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chromosome 2, complete sequence Length = 178517 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctcc 515 ||||||||||||||||||||| Sbjct: 153523 ctccttttcttctctctctcc 153543
>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence Length = 200656 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 ctctccttttcttctctctct 513 ||||||||||||||||||||| Sbjct: 91066 ctctccttttcttctctctct 91086
>emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chromosome 9, complete sequence Length = 219226 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 tctccttttcttctctctctc 514 ||||||||||||||||||||| Sbjct: 209235 tctccttttcttctctctctc 209215
>emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chromosome X, complete sequence Length = 180106 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 cctccttgtagatcctgttcc 296 ||||||||||||||||||||| Sbjct: 54473 cctccttgtagatcctgttcc 54453
>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH015H17, complete sequence Length = 110885 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 311 ttggagtggtggaggcactcgaggtagtc 339 ||||| |||||||| |||||||||||||| Sbjct: 4492 ttggaatggtggagacactcgaggtagtc 4520
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence Length = 118144 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 311 ttggagtggtggaggcactcgaggtagtc 339 ||||| |||||||| |||||||||||||| Sbjct: 90643 ttggaatggtggagacactcgaggtagtc 90671
>ref|XM_474235.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1611 Score = 40.1 bits (20), Expect = 7.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 451 cgccatcgcctct-tcttcttctccgccgtcg 481 ||||||||||||| |||||||||||| ||||| Sbjct: 216 cgccatcgcctctctcttcttctccgacgtcg 247
>gb|AC161450.3| Mus musculus BAC clone RP24-75I4 from chromosome 15, complete sequence Length = 198734 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 92714 ctctccttttcttctctctc 92695
>gb|AC102101.7| Mus musculus chromosome 15, clone RP23-74N15, complete sequence Length = 191261 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 152401 ctctccttttcttctctctc 152420
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cgtcgaccttggcagcctct 496 |||||||||||||||||||| Sbjct: 4111994 cgtcgaccttggcagcctct 4112013
>ref|XM_875096.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 4, transcript variant 4 (LOC540731), mRNA Length = 4035 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gcctctccttttcttctctc 510 |||||||||||||||||||| Sbjct: 3321 gcctctccttttcttctctc 3302
>ref|XM_875010.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 4, transcript variant 3 (LOC540731), mRNA Length = 3889 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gcctctccttttcttctctc 510 |||||||||||||||||||| Sbjct: 3175 gcctctccttttcttctctc 3156
>ref|XM_612859.2| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 4, transcript variant 1 (LOC540731), mRNA Length = 4063 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gcctctccttttcttctctc 510 |||||||||||||||||||| Sbjct: 3349 gcctctccttttcttctctc 3330
>gb|AC161197.9| Mus musculus chromosome 7, clone RP23-179K11, complete sequence Length = 240657 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 gcctctccttttcttctctctctc 514 |||||| ||||||||||||||||| Sbjct: 167961 gcctctacttttcttctctctctc 167938
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 1704017 tccttttcttctctctctcc 1703998
>ref|XM_447073.1| Candida glabrata CBS138, CAGL0H06391g partial mRNA Length = 1980 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 cctcttcttcttctccgccg 478 |||||||||||||||||||| Sbjct: 134 cctcttcttcttctccgccg 115
>gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosome 14, complete sequence Length = 172035 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 17281 ctctccttttcttctctctc 17262
>gb|AC136456.3| Mus musculus BAC clone RP24-135C6 from chromosome 7, complete sequence Length = 162131 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 cctctccttttcttctctctctcc 515 |||||||||||||| ||||||||| Sbjct: 53060 cctctccttttcttatctctctcc 53083
>emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in linkage group 9, complete sequence Length = 204067 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccttttcttctctctctccg 516 |||||||||||||||||||| Sbjct: 165251 ccttttcttctctctctccg 165232
>gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, complete sequence Length = 223130 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tctccttttcttctctctct 513 |||||||||||||||||||| Sbjct: 165904 tctccttttcttctctctct 165885
>gb|AC145509.2| Gasterosteus aculeatus clone CH213-128O17, complete sequence Length = 213989 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctct 513 |||||||||||||||||||| Sbjct: 196066 tctccttttcttctctctct 196085
>gb|AC098592.5| Homo sapiens BAC clone RP11-403N12 from 7, complete sequence Length = 190672 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 147245 ctccttttcttctctctctc 147264
>gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205825 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 489 cagcctctccttttcttctctctc 512 |||||||| ||||||||||||||| Sbjct: 46235 cagcctctacttttcttctctctc 46258
>gb|AC146057.2| Pan troglodytes BAC clone RP43-90E18 from 7, complete sequence Length = 210447 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 59568 ctccttttcttctctctctc 59549
>gb|AC152921.8| Medicago truncatula clone mth2-102h2, complete sequence Length = 110614 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 64402 ctccttttcttctctctctc 64383
>gb|BC114275.1| Danio rerio similar to CDNA sequence BC019977, mRNA (cDNA clone IMAGE:7055214), partial cds Length = 1226 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tcggcttcctctttggcctt 246 |||||||||||||||||||| Sbjct: 252 tcggcttcctctttggcctt 233
>emb|AL590675.3| Human DNA sequence from clone RP11-297O16 on chromosome 6, complete sequence Length = 48306 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 38717 ctctccttttcttctctctc 38736
>emb|AL158071.23| Human DNA sequence from clone RP11-305L7 on chromosome 9 Contains four novel genes, a peptidylpolyl isomerase A (cyclophilin A) (PPIA) pseudogene, the 3' end of the AUH gene for AU RNA binding protein/enoyl-Coenzyme A hydratase and three CpG islands, complete sequence Length = 181623 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 126530 ctccttttcttctctctctc 126549
>emb|AL138880.14| Human DNA sequence from clone RP11-491H9 on chromosome 6 Contains part of the SUPT3H gene for suppressor of Ty 3 homolog (S. cerevisiae), a novel pseudogene and a pseudogene similar to part of poly(rC) binding protein 3 (PCBP3), complete sequence Length = 165454 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tttaccaaactcatgatttt 80 |||||||||||||||||||| Sbjct: 134610 tttaccaaactcatgatttt 134591
>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the 3' end of the gene similar to G protein coupled receptor affecting testicular descent (H. sapiens)(GREAT)and a CpG island, complete sequence Length = 170522 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aacaaaagcataagaaaaat 183 |||||||||||||||||||| Sbjct: 161997 aacaaaagcataagaaaaat 162016
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 cctcttcttcttctccgccg 478 |||||||||||||||||||| Sbjct: 629614 cctcttcttcttctccgccg 629595
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cgtcgaccttggcagcctct 496 |||||||||||||||||||| Sbjct: 302562 cgtcgaccttggcagcctct 302581
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cgtcgaccttggcagcctct 496 |||||||||||||||||||| Sbjct: 306085 cgtcgaccttggcagcctct 306104
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 40.1 bits (20), Expect = 7.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 451 cgccatcgcctct-tcttcttctccgccgtcg 481 ||||||||||||| |||||||||||| ||||| Sbjct: 118204 cgccatcgcctctctcttcttctccgacgtcg 118173
>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two novel genes, the 5' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin) and the Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and 7, complete sequence Length = 223726 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 cctctccttttcttctctctctcc 515 ||||||| |||||||||||||||| Sbjct: 80139 cctctccatttcttctctctctcc 80162
>emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chromosome 4 Contains a novel gene and a CpG island, complete sequence Length = 193243 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aaaagcataagaaaaatcaa 186 |||||||||||||||||||| Sbjct: 14770 aaaagcataagaaaaatcaa 14751
>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence Length = 201550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctct 513 |||||||||||||||||||| Sbjct: 17734 tctccttttcttctctctct 17753
>gb|AC087113.11| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, RP23-99A15, Complete Sequence, complete sequence Length = 223882 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 100242 ctctccttttcttctctctc 100261
>gb|AC110772.3| Homo sapiens BAC clone RP11-217E13 from 4, complete sequence Length = 192046 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 129442 tccttttcttctctctctcc 129461
>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08, complete sequence Length = 133090 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 130303 tccttttcttctctctctcc 130322
>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence Length = 222121 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 cctctccttttcttctctctctcc 515 ||||||| |||||||||||||||| Sbjct: 170973 cctctccatttcttctctctctcc 170996
>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced Length = 381696 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 86749 ctctccttttcttctctctc 86730
>ref|XM_688457.1| PREDICTED: Danio rerio similar to CDNA sequence BC019977 (LOC565172), mRNA Length = 2781 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tcggcttcctctttggcctt 246 |||||||||||||||||||| Sbjct: 1826 tcggcttcctctttggcctt 1807
>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence Length = 133862 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 51627 ctccttttcttctctctctc 51646
>gb|AC158135.5| Mus musculus chromosome 3, clone RP24-393I15, complete sequence Length = 191562 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 31952 ctccttttcttctctctctc 31933
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 cctctccttttcttctctctctcc 515 ||||||||||| |||||||||||| Sbjct: 3037 cctctcctttttttctctctctcc 3014
>gb|AC154618.2| Mus musculus BAC clone RP23-321M11 from chromosome 14, complete sequence Length = 209522 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 9831 ctctccttttcttctctctc 9850
>gb|AC153626.5| Mus musculus 6 BAC RP23-245J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190365 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 489 cagcctctccttttcttctctctc 512 |||||||| ||||||||||||||| Sbjct: 19594 cagcctctacttttcttctctctc 19571
>gb|AC120377.25| Mus musculus chromosome 3, clone RP24-262L5, complete sequence Length = 158004 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 869 ctccttttcttctctctctc 888
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 1704015 tccttttcttctctctctcc 1703996
>gb|AC068787.41| Homo sapiens 12 BAC RP11-483I24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173320 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ctctccttttcttctctctc 512 |||||||||||||||||||| Sbjct: 95800 ctctccttttcttctctctc 95819
>gb|AC073892.6| Homo sapiens BAC clone RP11-696G20 from 2, complete sequence Length = 91076 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 cctctccttttcttctctct 511 |||||||||||||||||||| Sbjct: 24544 cctctccttttcttctctct 24525
>gb|AC092533.1| Homo sapiens BAC clone RP11-57I10 from 2, complete sequence Length = 121688 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 86263 tccttttcttctctctctcc 86282
>emb|BX640750.1|HSM806828 Homo sapiens mRNA; cDNA DKFZp686K10126 (from clone DKFZp686K10126) Length = 6744 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tttaccaaactcatgatttt 80 |||||||||||||||||||| Sbjct: 2971 tttaccaaactcatgatttt 2990
>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence Length = 128978 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 acttgcagcaaacaaaagca 173 |||||||||||||||||||| Sbjct: 52682 acttgcagcaaacaaaagca 52663
>gb|AC004993.1|AC004993 Homo sapiens PAC clone RP5-1194E14 from 7p21, complete sequence Length = 161453 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 21381 ctccttttcttctctctctc 21362
>dbj|AK068004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129G21, full insert sequence Length = 2183 Score = 40.1 bits (20), Expect = 7.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 451 cgccatcgcctct-tcttcttctccgccgtcg 481 ||||||||||||| |||||||||||| ||||| Sbjct: 399 cgccatcgcctctctcttcttctccgacgtcg 430
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 489 cagcctctccttttcttctctctc 512 ||||||| |||||||||||||||| Sbjct: 1621785 cagcctccccttttcttctctctc 1621808 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 tcttcttcttctccgccgtc 480 |||||||||||||||||||| Sbjct: 216523 tcttcttcttctccgccgtc 216542
>gb|AC149606.6| Mus musculus BAC clone RP23-466P2 from 7, complete sequence Length = 214153 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 cctctccttttcttctctctctcc 515 |||||||||||||| ||||||||| Sbjct: 1122 cctctccttttcttatctctctcc 1099
>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16, complete sequence Length = 196875 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcggcttcctctttggcctt 246 |||||||||||||||||||| Sbjct: 100003 tcggcttcctctttggcctt 100022
>emb|CR385027.12| Zebrafish DNA sequence from clone DKEY-13A17 in linkage group 9, complete sequence Length = 228454 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 ccttttcttctctctctccg 516 |||||||||||||||||||| Sbjct: 165684 ccttttcttctctctctccg 165703
>emb|CT027556.11| Mouse DNA sequence from clone RP23-405M23 on chromosome 12, complete sequence Length = 209313 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 20776 ctccttttcttctctctctc 20757
>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence Length = 179537 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 aaacaaaagcataagaaaaa 182 |||||||||||||||||||| Sbjct: 168050 aaacaaaagcataagaaaaa 168031
>dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-8M21, complete sequence Length = 118300 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tttaccaaactcatgatttt 80 |||||||||||||||||||| Sbjct: 90188 tttaccaaactcatgatttt 90207
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggctcatacacgagctgaagtcca 401 |||||||||| ||||||||||||| Sbjct: 112729 ggctcatacatgagctgaagtcca 112752
>gb|AC005602.1|AC005602 Homo sapiens chromosome 19, cosmid F19843, complete sequence Length = 39951 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 cctctccttttcttctctctctcc 515 ||||||||||| |||||||||||| Sbjct: 29769 cctctcctttttttctctctctcc 29746
>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence Length = 207908 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggctcatacacgagctgaagtcca 401 |||||||||| ||||||||||||| Sbjct: 192939 ggctcatacatgagctgaagtcca 192962
>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence Length = 206439 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 14963 ctccttttcttctctctctc 14982
>gb|AC145168.5| Mus musculus BAC clone RP23-398K14 from 3, complete sequence Length = 217058 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 175961 ctccttttcttctctctctc 175980
>gb|AC149608.4| Mus musculus BAC clone RP23-436E6 from 8, complete sequence Length = 196473 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tctccttttcttctctctct 513 |||||||||||||||||||| Sbjct: 99377 tctccttttcttctctctct 99358
>emb|AL929556.14| Mouse DNA sequence from clone RP23-353B17 on chromosome 2, complete sequence Length = 192715 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 138929 ctccttttcttctctctctc 138910
>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence Length = 140942 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aacaaaagcataagaaaaat 183 |||||||||||||||||||| Sbjct: 45466 aacaaaagcataagaaaaat 45485
>gb|AC159253.3| Mus musculus BAC clone RP24-110K11 from chromosome 3, complete sequence Length = 197735 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 cctctccttttcttctctct 511 |||||||||||||||||||| Sbjct: 68416 cctctccttttcttctctct 68435
>dbj|AP004543.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102b, complete sequence Length = 38490 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tctccttttcttctctctct 513 |||||||||||||||||||| Sbjct: 31100 tctccttttcttctctctct 31119
>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 149H13 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 240425 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 cctctccttttcttctctctctcc 515 ||||||| |||||||||||||||| Sbjct: 2075 cctctccatttcttctctctctcc 2052
>gb|AC165249.2| Mus musculus BAC clone RP24-157P13 from chromosome 12, complete sequence Length = 193902 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 127418 tccttttcttctctctctcc 127399
>dbj|AB045573.1| Danio rerio DNA, fkk-7a locus, insertion site of the medaka fish Tol2 element Length = 703 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcggcttcctctttggcctt 246 |||||||||||||||||||| Sbjct: 651 tcggcttcctctttggcctt 670
>dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864N7, complete sequences Length = 230157 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tttaccaaactcatgatttt 80 |||||||||||||||||||| Sbjct: 217454 tttaccaaactcatgatttt 217473
>emb|AL831757.5| Mouse DNA sequence from clone RP23-279A21 on chromosome X, complete sequence Length = 85948 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 22833 tccttttcttctctctctcc 22814
>dbj|AB082522.1| Homo sapiens mRNA for KIAA1991 protein Length = 7811 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tttaccaaactcatgatttt 80 |||||||||||||||||||| Sbjct: 4067 tttaccaaactcatgatttt 4086
>dbj|AP005118.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-22C7, complete sequences Length = 166857 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 38886 ctccttttcttctctctctc 38905
>dbj|AP000897.6| Homo sapiens genomic DNA, chromosome 18, clone:RP11-678G15, complete sequence Length = 187987 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctccttttcttctctctctc 514 |||||||||||||||||||| Sbjct: 187601 ctccttttcttctctctctc 187620
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tccttttcttctctctctcc 515 |||||||||||||||||||| Sbjct: 116480 tccttttcttctctctctcc 116461 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,700,288 Number of Sequences: 3902068 Number of extensions: 6700288 Number of successful extensions: 170881 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 170097 Number of HSP's gapped (non-prelim): 824 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)