ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC091147.1| Rattus norvegicus solute carrier family 27 (fatty... 40 8.1
2ref|NM_024143.1| Rattus norvegicus solute carrier family 27 (fat... 40 8.1
3dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 8.1
4dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 8.1
5gb|AF242189.1| Rattus norvegicus bile acid CoA ligase mRNA, comp... 40 8.1

>gb|BC091147.1| Rattus norvegicus solute carrier family 27 (fatty acid transporter),
            member 5, mRNA (cDNA clone MGC:108681 IMAGE:7370589),
            complete cds
          Length = 2314

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   caggacttcacccacataca 110
            ||||||||||||||||||||
Sbjct: 1231 caggacttcacccacataca 1212



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>ref|NM_024143.1| Rattus norvegicus solute carrier family 27 (fatty acid transporter),
            member 5 (Slc27a5), mRNA
          Length = 2360

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   caggacttcacccacataca 110
            ||||||||||||||||||||
Sbjct: 1209 caggacttcacccacataca 1190



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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 290     accacctccaaactccccag 309
               ||||||||||||||||||||
Sbjct: 1251298 accacctccaaactccccag 1251317



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     caacgcatcgcggaactgca 396
               ||||||||||||||||||||
Sbjct: 4836321 caacgcatcgcggaactgca 4836340



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>gb|AF242189.1| Rattus norvegicus bile acid CoA ligase mRNA, complete cds
          Length = 2360

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   caggacttcacccacataca 110
            ||||||||||||||||||||
Sbjct: 1209 caggacttcacccacataca 1190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,266,185
Number of Sequences: 3902068
Number of extensions: 4266185
Number of successful extensions: 72916
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72895
Number of HSP's gapped (non-prelim): 21
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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