ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3i12 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 270 bits (690), Expect = 3e-72 Identities = 128/161 (79%), Positives = 145/161 (90%) Frame = -1 Query: 691 YKMGTYWPYTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEK 512 YK+GTYWPYTPSIQLLYG RA LDL+FEEGL+N+I RH RLG ATRLAV AWGLKNCT+K Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300 Query: 511 EENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 332 EE S+TVTAV+VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQLL Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360 Query: 331 GCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 209 GCL GVEM+LKD+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 179 bits (454), Expect = 7e-45 Identities = 90/145 (62%), Positives = 109/145 (75%) Frame = -1 Query: 676 YWPYTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFS 497 Y+PYTP + LLYG R L LFEEGL+NV RH LG ATR AVAAWGLK C + E S Sbjct: 227 YFPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNS 286 Query: 496 DTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGG 317 DTVTA++ P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG + G Sbjct: 287 DTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAG 346 Query: 316 VEMVLKDIGYPVKLGSGVAAAAAYL 242 EM L D G V GSGVAAA++YL Sbjct: 347 AEMSLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 174 bits (441), Expect = 2e-43 Identities = 89/148 (60%), Positives = 107/148 (72%) Frame = -1 Query: 676 YWPYTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFS 497 ++PYTP+ QLL G R LDLLF EGLDNV RHTRL + R AV AWGLK C ++ + +S Sbjct: 241 FFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYS 300 Query: 496 DTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGG 317 DTV+A++VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L Sbjct: 301 DTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFA 360 Query: 316 VEMVLKDIGYPVKLGSGVAAAAAYLSNS 233 EM LKD G +KLGSG AAA Y S + Sbjct: 361 AEMALKDNGVNLKLGSGTGAAAEYFSKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 104 bits (259), Expect = 3e-22 Identities = 60/143 (41%), Positives = 83/143 (58%) Frame = -1 Query: 670 PYTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDT 491 PYTPS+ L Y LDL+ EEG++N +KRH RL ATR + A G++ KE S T Sbjct: 242 PYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVT 300 Query: 490 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVE 311 VT+ P I+ S+ +YN+ + G +AGK+FRIGH+G E ++L L VE Sbjct: 301 VTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVE 360 Query: 310 MVLKDIGYPVKLGSGVAAAAAYL 242 + LK++G+ VK SGV A L Sbjct: 361 LALKELGFEVK-ESGVEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 89.0 bits (219), Expect = 1e-17 Identities = 50/146 (34%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Frame = -1 Query: 670 PYTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDT 491 P+TP + L+ L ++ +EGL+++ RH R ATR A+ A L +E S Sbjct: 240 PFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPA 298 Query: 490 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVE 311 +TAV P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+ +E Sbjct: 299 ITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLE 357 Query: 310 MVLKDIGYP-VKLGSGVAAAAAYLSN 236 +VL ++G+ G+GVAAAA SN Sbjct: 358 VVLLELGHENFNSGAGVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 85.9 bits (211), Expect = 1e-16 Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Frame = -1 Query: 670 PYTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDT 491 P+TP + L + + L+++ EGL+ + +RH RL ATR A+ A L + S Sbjct: 240 PFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPA 298 Query: 490 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVE 311 +TAV P +++ I KR++++L G + + G++FRIGHLG + + +L + +E Sbjct: 299 ITAVA-PQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALE 357 Query: 310 MVLKDIGYP-VKLGSGVAAAAAYLSNS 233 VL ++GY G+GVAAA+ LS + Sbjct: 358 AVLAELGYTNFTPGAGVAAASRVLSTA 384
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 57.4 bits (137), Expect = 4e-08 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 1/146 (0%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + +LY R G+ L+ EEGL+ +RH A + A GL+ + + V Sbjct: 266 HTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGD-DSCKMPVV 324 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVE 311 T V +P ID + ++ + + +AGK++RIG +G+ + +L L G+E Sbjct: 325 TCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLE 384 Query: 310 MVLKDIGYPVKLGSGVAAAAAYLSNS 233 VL ++ G + AA N+ Sbjct: 385 AVLLRHNAGIEAGKALQAALDVYENA 410
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 56.6 bits (135), Expect = 7e-08 Identities = 35/104 (33%), Positives = 51/104 (49%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + LY R GL LL E+GL+N ++H + A GL+ + TV Sbjct: 284 HTTPVVSLYSLREGLALLSEQGLENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTV 343 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 356 T V VP D +IV + +R+ + + GL GKV RIG +G Sbjct: 344 TTVAVPTGYDWRDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG 387
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 51.6 bits (122), Expect = 2e-06 Identities = 33/105 (31%), Positives = 49/105 (46%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + LY R L L+ E+GL+N +RH + GLK + E T+ Sbjct: 284 HTLPVISLYCLRESLALISEQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTI 343 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 353 T V VP + +IV + +N+ + GL KV RIG LG+ Sbjct: 344 TTVTVPAGYNWRDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 50.4 bits (119), Expect = 5e-06 Identities = 32/104 (30%), Positives = 49/104 (47%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + LY R L L+ E+GL+N ++H + + GL+ + TV Sbjct: 284 HTTPVVSLYSLRESLALIAEQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTV 343 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 356 T V VP D +IV + +++ + GL GKV RIG LG Sbjct: 344 TTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 50.1 bits (118), Expect = 7e-06 Identities = 33/104 (31%), Positives = 49/104 (47%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + LY R L L+ E+GL+N ++H + A GL+ + TV Sbjct: 262 HTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTV 321 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 356 T V VP D +IV + +++ + GL GKV RIG LG Sbjct: 322 TTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 44.3 bits (103), Expect = 4e-04 Identities = 30/104 (28%), Positives = 47/104 (45%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + ++ R L LL E+GL+ +RH + + GL+ + TV Sbjct: 262 HTTPVIGIFALRESLALLVEQGLEKSWQRHREVAQHLYRRLQELGLQLFVKDPALRLPTV 321 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 356 T V+VP +IV + + + + GL A KV RIG LG Sbjct: 322 TTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 44.3 bits (103), Expect = 4e-04 Identities = 30/105 (28%), Positives = 47/105 (44%) Frame = -1 Query: 667 YTPSIQLLYGXRAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 488 +T + LY R L L+ E GL+N +RH + GLK + E T+ Sbjct: 284 HTTPVTSLYCLRESLALIAERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTI 343 Query: 487 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 353 T V Y + +IV + +++ + GL +V RIG LG+ Sbjct: 344 TTVTAAGY-NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 387
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.007 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -1 Query: 451 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 284 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 283 VK 278 VK Sbjct: 135 VK 136
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 235 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 327 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -1 Query: 613 FEEGLDN--VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIV 443 F+ GL + V +R L TR ++ W GL+ T S +TA +PP D++ + Sbjct: 292 FQAGLGHGRVRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLR 351 Query: 442 KHAWKRYNLSLGLGLNKVAGKVFRI 368 W R+ + + + L++ G + R+ Sbjct: 352 HGLWDRFRIDVPV-LDRPDGPLLRV 375
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 235 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 333 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 237 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 368 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +3 Query: 213 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 371 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,126,915 Number of Sequences: 219361 Number of extensions: 1594627 Number of successful extensions: 6390 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6359 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
