ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3h23 |
|---|---|
| Clone Library Name | barley_pub |
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 32.7 bits (73), Expect = 0.73 Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Frame = +1 Query: 97 FYNNRPNSYSGPSMTNLQLVYTPTPDXXXQQPGKTAGTGITCASMRSPEPK---PHVQVR 267 F N PN Y MT+LQ P P PG A T S SP P+ P Q Sbjct: 14 FIANLPNGY----MTDLQ---RPEPQQPPPAPGPGAATASAATSAASPGPERRPPPAQAP 66 Query: 268 FPQPRYRSAGT 300 PQP + A T Sbjct: 67 APQPAPQPAPT 77
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 32.3 bits (72), Expect = 0.95 Identities = 23/67 (34%), Positives = 25/67 (37%) Frame = +1 Query: 97 FYNNRPNSYSGPSMTNLQLVYTPTPDXXXQQPGKTAGTGITCASMRSPEPKPHVQVRFPQ 276 F N PN Y MT+LQ P P PG T G G T + RS P P Sbjct: 13 FMANLPNGY----MTDLQRPQPPPPPPGAHSPGATPGPG-TATAERSSGVAPAASPAAPS 67 Query: 277 PRYRSAG 297 P G Sbjct: 68 PGSSGGG 74
>TAF1_HUMAN (P21675) Transcription initiation factor TFIID subunit 1 (EC| 2.7.11.1) (Transcription initiation factor TFIID 250 kDa subunit) (TAF(II)250) (TAFII-250) (TAFII250) (TBP-associated factor 250 kDa) (p250) (Cell cycle gene 1 protein) Length = 1872 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 558 TIRDKARKMEYKNRXEFRNDVAQIADNAHMYNETRH 451 T+R+ RK Y +R EFR + I N+ YN +H Sbjct: 1429 TLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 1464
>TAF1L_HUMAN (Q8IZX4) Transcription initiation factor TFIID 210 kDa subunit| (TBP-associated factor 210 kDa) (TAF(II)210) (TBP-associated factor 1-like) Length = 1826 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 558 TIRDKARKMEYKNRXEFRNDVAQIADNAHMYNETRH 451 T+R+ RK Y +R EFR + I N+ YN +H Sbjct: 1448 TLRENVRKCLYPSREEFREHLELIVKNSATYNGPKH 1483
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 561 GTIRDKARKMEYKNRXEFRNDVAQIADNAHMYNETRH 451 GT++ K EYK+ EF DV I N + YN H Sbjct: 528 GTVKRKMDNREYKSAPEFAADVRLIFTNCYKYNPPDH 564
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 30.4 bits (67), Expect = 3.6 Identities = 21/67 (31%), Positives = 26/67 (38%) Frame = +1 Query: 97 FYNNRPNSYSGPSMTNLQLVYTPTPDXXXQQPGKTAGTGITCASMRSPEPKPHVQVRFPQ 276 F N PN Y MT+LQ P P PG T G+ T ++ R+ P P Sbjct: 13 FMANLPNGY----MTDLQRPQPPPPPPSAASPGATPGSA-TASAERASTAAPVASPAAPS 67 Query: 277 PRYRSAG 297 P G Sbjct: 68 PGSSGGG 74
>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC| 2.7.11.1) (Transcription initiation factor TFIID 230 kDa subunit) (TAFII-230) (TAFII250) (TBP-associated factor 230 kDa) (p230) Length = 2129 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 558 TIRDKARKMEYKNRXEFRNDVAQIADNAHMYN 463 T+R+ R+ Y +R F D+ QI DN+ +YN Sbjct: 1519 TMREYIRQRRYTSREMFLEDLKQIVDNSLIYN 1550
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)| Length = 706 Score = 30.0 bits (66), Expect = 4.7 Identities = 21/67 (31%), Positives = 24/67 (35%) Frame = +1 Query: 97 FYNNRPNSYSGPSMTNLQLVYTPTPDXXXQQPGKTAGTGITCASMRSPEPKPHVQVRFPQ 276 F N PN Y MT+LQ P P PG T G T + R+ P P Sbjct: 13 FMANLPNGY----MTDLQRPQPPPPPPAAPSPGATTGPA-TATAERASSAAPVASPAAPS 67 Query: 277 PRYRSAG 297 P G Sbjct: 68 PGSSGGG 74
>YBI1_YEAST (P38180) Hypothetical 40.8 kDa protein in RHK1-PET112 intergenic| region Length = 368 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +1 Query: 34 YHPHRMH-NYNS*ILTKLYSYFFYNNRPNSYSGP-SMTNLQLVYTPTP 171 YHPH H YN+ SY++YNN NS P + LQ + P Sbjct: 49 YHPHYNHMKYNN-----TGSYYYYNNNNNSSVNPHNQAGLQSINRSIP 91
>YEA7_YEAST (P40002) Hypothetical 72.5 kDa protein in GCN4-WBP1 intergenic| region Length = 666 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +1 Query: 88 SYFFYNNRPNSYS----GPSMTNLQLVYTPTPDXXXQQPGKTAGTGI 216 +Y++ N+ + Y P++ + L+YT P Q P T TG+ Sbjct: 283 NYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGM 329
>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular| matrix protein F22) Length = 2130 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 558 TIRDKARKMEYKNRXEFRNDVAQIADNAHMYNE 460 TIRDK +Y N F DV + DN +NE Sbjct: 2071 TIRDKLTSGQYPNVEAFSLDVRLVFDNCETFNE 2103
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -3 Query: 558 TIRDKARKMEYKNRXEFRNDVAQIADNAHMYNETRH 451 TI+ K EY++ EF DV + N + YN H Sbjct: 403 TIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDH 438
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 29.3 bits (64), Expect = 8.0 Identities = 21/67 (31%), Positives = 24/67 (35%) Frame = +1 Query: 97 FYNNRPNSYSGPSMTNLQLVYTPTPDXXXQQPGKTAGTGITCASMRSPEPKPHVQVRFPQ 276 F N PN Y MT+LQ P P PG T G+ A R+ P P Sbjct: 13 FMANLPNGY----MTDLQRPQPPPPPPSAASPGATPGSAAASAE-RASTAAPVASPAAPS 67 Query: 277 PRYRSAG 297 P G Sbjct: 68 PGSSGGG 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,107,557 Number of Sequences: 219361 Number of extensions: 1403419 Number of successful extensions: 3630 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3488 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3626 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
