>gb|AY108195.1| Zea mays PCO127996 mRNA sequence
          Length = 899

 Score =  103 bits (52), Expect = 6e-19
 Identities = 147/179 (82%)
 Strand = Plus / Minus

                                                                       
Query: 383 tctgcgctttcatcaagaaggtggtcgcacagctccaggagctcgtcggccagtggaggg 442
           |||||| |||| | ||| || |||||||| | ||||| ||||||||| || || ||||||
Sbjct: 511 tctgcgttttcgtaaagcagatggtcgcagacctccatgagctcgtcagcaagcggaggg 452

                                                                       
Query: 443 atgtgaggatgccgcgtctcgttgtacatgtgcgcattgtctgctatctgcgccacgtca 502
           ||||||||||  || || |||||||| ||||| ||||||  |  |||||| || ||||| 
Sbjct: 451 atgtgaggatagcgagtgtcgttgtatatgtgtgcattgagttgtatctgtgctacgtcg 392

                                                                      
Query: 503 ttcctgaattcgnacctgtttttgtactccatcttcctcgccttgtccctgatggtacc 561
           | |||||||||   ||||||| ||||| ||||||| ||| |||||||||||||||||||
Sbjct: 391 tgcctgaattcatccctgtttctgtacaccatctttctcaccttgtccctgatggtacc 333

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 115      aatagttacagcgggccctcgatgactaacctacagctagtgtacactccgactccc 171
                ||||||||||| |||||||| ||| |||||||| || | ||||||| ||| ||||||
Sbjct: 25976397 aatagttacagtgggccctcaatgtctaacctagagtttgtgtacattccaactccc 25976453



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                            
Query: 377      agcacgtctgcgctttcatcaagaaggtggtcgcacagctccaggagctcgtcggccagt 436
                ||||| || |||||||| |||||||| |  || |||| ||||| |||||| || || || 
Sbjct: 25976660 agcacatccgcgctttcctcaagaagataatcacacaactccaagagctcatcagcaagc 25976719

                                 
Query: 437      ggagggatgtgaggatg 453
                ||||||||||| |||||
Sbjct: 25976720 ggagggatgtggggatg 25976736

>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 115   aatagttacagcgggccctcgatgactaacctacagctagtgtacactccgactccc 171
             ||||||||||| |||||||| ||| |||||||| || | ||||||| ||| ||||||
Sbjct: 14255 aatagttacagtgggccctcaatgtctaacctagagtttgtgtacattccaactccc 14311



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 377   agcacgtctgcgctttcatcaagaaggtggtcgcacagctccaggagctcgtcggccagt 436
             ||||| || |||||||| |||||||| |  || |||| ||||| |||||| || || || 
Sbjct: 14518 agcacatccgcgctttcctcaagaagataatcacacaactccaagagctcatcagcaagc 14577

                              
Query: 437   ggagggatgtgaggatg 453
             ||||||||||| |||||
Sbjct: 14578 ggagggatgtggggatg 14594

>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017B12
          Length = 157424

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 115    aatagttacagcgggccctcgatgactaacctacagctagtgtacactccgactccc 171
              ||||||||||| |||||||| ||| |||||||| || | ||||||| ||| ||||||
Sbjct: 131495 aatagttacagtgggccctcaatgtctaacctagagtttgtgtacattccaactccc 131551



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                          
Query: 377    agcacgtctgcgctttcatcaagaaggtggtcgcacagctccaggagctcgtcggccagt 436
              ||||| || |||||||| |||||||| |  || |||| ||||| |||||| || || || 
Sbjct: 131758 agcacatccgcgctttcctcaagaagataatcacacaactccaagagctcatcagcaagc 131817

                               
Query: 437    ggagggatgtgaggatg 453
              ||||||||||| |||||
Sbjct: 131818 ggagggatgtggggatg 131834

>dbj|AK108404.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G07, full
           insert sequence
          Length = 804

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 115 aatagttacagcgggccctcgatgactaacctacagctagtgtacactccgactccc 171
           ||||||||||| |||||||| ||| |||||||| || | ||||||| ||| ||||||
Sbjct: 449 aatagttacagtgggccctcaatgtctaacctagagtttgtgtacattccaactccc 393



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 377 agcacgtctgcgctttcatcaagaaggtggtcgcacagctccaggagctcgtcggccagt 436
           ||||| || |||||||| |||||||| |  || |||| ||||| |||||| || || || 
Sbjct: 186 agcacatccgcgctttcctcaagaagataatcacacaactccaagagctcatcagcaagc 127

                            
Query: 437 ggagggatgtgaggatg 453
           ||||||||||| |||||
Sbjct: 126 ggagggatgtggggatg 110

>emb|BX321867.5| Human DNA sequence from clone RP11-533H4 on chromosome X, complete
             sequence
          Length = 91774

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   cagtggagggatgtgaggatg 453
             |||||||||||||||||||||
Sbjct: 85664 cagtggagggatgtgaggatg 85684

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 254     atgtacaggtgcgctttcccc 274
               |||||||||||||||||||||
Sbjct: 4644822 atgtacaggtgcgctttcccc 4644842

>emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 map Xq28, complete
             sequence
          Length = 144757

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   cagtggagggatgtgaggatg 453
             |||||||||||||||||||||
Sbjct: 15623 cagtggagggatgtgaggatg 15643

>gb|AC125279.1| Mus musculus BAC clone RP23-433F5 from 8, complete sequence
          Length = 201197

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 200   cagctgggactgggatcacatgtg 223
             |||||||||||||||||| |||||
Sbjct: 16965 cagctgggactgggatcagatgtg 16988

>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a
             likely ortholog of mouse hepatoma-derived growth factor
             related protein 3 pseudogene (HDGFRP3), a novel protein
             similar to PAGE-5 protein (LOC203569), a novel protein
             similar to PAGE-5 protein (LOC139795), gene FLJ20434, a
             cytochrome c oxidase I (MTCO1) pseudogene, a G antigen,
             family D pseudogene and a CpG island, complete sequence
          Length = 130005

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    agctgaatattgacaaagtt 83
             ||||||||||||||||||||
Sbjct: 88422 agctgaatattgacaaagtt 88441

>emb|AL357513.8| Human DNA sequence from clone RP11-100A16 on chromosome 6 Contains a
             cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1)
             pseudogene, complete sequence
          Length = 177645

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   atgactaacctacagctagt 155
             ||||||||||||||||||||
Sbjct: 10511 atgactaacctacagctagt 10530

>ref|NG_001472.1| Mus musculus transcription factor Dp 1, pseudogene (Tfdp1-ps) on
            chromosome 1
          Length = 2002

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 410  cacagctccaggagctcgtc 429
            ||||||||||||||||||||
Sbjct: 1092 cacagctccaggagctcgtc 1111

>gb|AC119676.2| Homo sapiens chromosome 1 clone RP5-820O16, complete sequence
          Length = 160573

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    gctttcatcaagaaggtggt 407
              ||||||||||||||||||||
Sbjct: 107489 gctttcatcaagaaggtggt 107470

>gb|DP000039.1| Callicebus moloch target 106 genomic scaffold
          Length = 208088

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   gcaaaacagctgggactggg 213
             ||||||||||||||||||||
Sbjct: 48964 gcaaaacagctgggactggg 48983

>gb|U78796.1|MMU78796 Mus musculus cell cycle regulatory transcription factor DP1,
            processed pseudogene, partial sequence
          Length = 2002

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 410  cacagctccaggagctcgtc 429
            ||||||||||||||||||||
Sbjct: 1092 cacagctccaggagctcgtc 1111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,512,836
Number of Sequences: 3902068
Number of extensions: 3512836
Number of successful extensions: 62060
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61981
Number of HSP's gapped (non-prelim): 79
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)