Clone Name | rbasd3h21 |
---|---|
Clone Library Name | barley_pub |
>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3, complete sequence Length = 272769 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 267 tgttattagaacaatattaatca 289 ||||||||||||||||||||||| Sbjct: 130160 tgttattagaacaatattaatca 130138
>gb|AC144938.3| Mus musculus BAC clone RP24-129H18 from chromosome 18, complete sequence Length = 207182 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 catcattatcatcactattac 574 ||||||||||||||||||||| Sbjct: 125884 catcattatcatcactattac 125864
>emb|CR381587.14| Zebrafish DNA sequence from clone CH211-142C4, complete sequence Length = 169210 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agataaatgatttatactctg 412 ||||||||||||||||||||| Sbjct: 83560 agataaatgatttatactctg 83540
>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence Length = 120384 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 aatgatttatactctgactat 417 ||||||||||||||||||||| Sbjct: 35956 aatgatttatactctgactat 35936
>gb|AC140544.21| Medicago truncatula clone mth2-17g16, complete sequence Length = 118777 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 aatgatttatactctgactat 417 ||||||||||||||||||||| Sbjct: 81873 aatgatttatactctgactat 81853
>emb|AL589791.4| Human DNA sequence from clone RP11-505P2 on chromosome 13, complete sequence Length = 161474 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 taaaccagactaacatatacactaa 234 ||||||||||||| ||||||||||| Sbjct: 144663 taaaccagactaatatatacactaa 144687
>gb|AC144710.2| Danio rerio clone CH211-215E4, complete sequence Length = 193226 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tctgattcaaatccaatccaa 457 ||||||||||||||||||||| Sbjct: 58789 tctgattcaaatccaatccaa 58809
>gb|AC153142.3| Mus musculus BAC clone RP23-296H17 from chromosome 18, complete sequence Length = 212451 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 catcattatcatcactattac 574 ||||||||||||||||||||| Sbjct: 36761 catcattatcatcactattac 36781
>emb|BX664738.14| Zebrafish DNA sequence from clone DKEY-240A9 in linkage group 8, complete sequence Length = 180024 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 tctgattcaaatccaatccaa 457 ||||||||||||||||||||| Sbjct: 46493 tctgattcaaatccaatccaa 46473
>emb|BX247884.6| Zebrafish DNA sequence from clone CH211-174M1 in linkage group 1, complete sequence Length = 108530 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agataaatgatttatactctg 412 ||||||||||||||||||||| Sbjct: 57113 agataaatgatttatactctg 57133
>gb|AC155293.3| Mus musculus BAC clone RP24-427L24 from chromosome 12, complete sequence Length = 156472 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 266 ttgttattagaacaatattaatcat 290 ||||||||||||||| ||||||||| Sbjct: 33479 ttgttattagaacaaaattaatcat 33503
>dbj|BS000015.1| Pan troglodytes chromosome 22 clone:PTB-017F24, map 22, complete sequences Length = 117746 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 aaaccagactaacatatacac 231 ||||||||||||||||||||| Sbjct: 81729 aaaccagactaacatatacac 81709
>gb|AF222685.1|AF222685 Homo sapiens chromosome 21 PAC 103K19 map 21q11.2, complete sequence Length = 85040 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 aaaccagactaacatatacac 231 ||||||||||||||||||||| Sbjct: 22064 aaaccagactaacatatacac 22044
>gb|AF222684.1|AF222684 Homo sapiens chromosome 21 BAC B194B7 map 21q11.2, complete sequence Length = 116459 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 aaaccagactaacatatacac 231 ||||||||||||||||||||| Sbjct: 108582 aaaccagactaacatatacac 108562
>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 Length = 340000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 aaaccagactaacatatacac 231 ||||||||||||||||||||| Sbjct: 180260 aaaccagactaacatatacac 180240
>ref|XM_631315.1| Dictyostelium discoideum hypothetical protein (DDB0216059), partial mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 4423 ttccatcattatcatcacta 4404
>ref|XM_629875.1| Dictyostelium discoideum hypothetical protein (DDB0184103), partial mRNA Length = 2688 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 catcattatcatcactatta 573 |||||||||||||||||||| Sbjct: 1651 catcattatcatcactatta 1632
>gb|AC102614.11| Mus musculus chromosome 8, clone RP23-421L10, complete sequence Length = 197194 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 catcattatcatcactatta 573 |||||||||||||||||||| Sbjct: 163657 catcattatcatcactatta 163638
>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence Length = 188649 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 cagactaacatatacactaa 234 |||||||||||||||||||| Sbjct: 120137 cagactaacatatacactaa 120156
>emb|AJ249467.1|BVA249467 Borrelia valaisiana ospA gene for outer surface protein A, strain NE231 Length = 822 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gtgatggaagcggaaaagct 45 |||||||||||||||||||| Sbjct: 458 gtgatggaagcggaaaagct 477
>gb|AC127356.4| Mus musculus BAC clone RP23-100B5 from chromosome 8, complete sequence Length = 199258 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cacaaacgctctgtctcctt 134 |||||||||||||||||||| Sbjct: 127316 cacaaacgctctgtctcctt 127335
>gb|AC004984.1| Homo sapiens PAC clone RP5-1164K10 from 7, complete sequence Length = 149765 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 agcatgtatttgttattagaacaa 280 ||||| |||||||||||||||||| Sbjct: 21833 agcatttatttgttattagaacaa 21810
>emb|AL353779.11| Human DNA sequence from clone RP1-43O17 on chromosome 1 Contains the LEP7 gene for late envelope protein 7, two small proline rich-like (epidermal differentiation complex) 1B (SPRL1B) pseudogenes, the gene for a novel protein, the LEP6 gene for late envelope protein 6, the LEP5 gene for late envelope protein 5, the LEP4 gene for late envelope protein 4 and the LEP3 gene for late envelope protein 3, complete sequence Length = 96013 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 387 atattagataaatgatttatactctgac 414 ||||||||||||||| ||||| |||||| Sbjct: 7842 atattagataaatgaattataatctgac 7815
>emb|AL138812.13| Human DNA sequence from clone RP1-276E15 on chromosome 11p12-14.1 Contains the start of the gene for DIPB protein, ESTs, STSs, GSSs and a CpG island, complete sequence Length = 112356 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 1589 ttccatcattatcatcacta 1570
>gb|AC026970.7| Homo sapiens chromosome 11, clone RP11-472K20, complete sequence Length = 132987 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 23246 ttccatcattatcatcacta 23265
>gb|AC002412.3| Homo sapiens chromosome X clone bWXD105, complete sequence Length = 121623 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 110156 ttccatcattatcatcacta 110175
>gb|AC090467.6| Homo sapiens chromosome 11, clone RP11-634M17, complete sequence Length = 208525 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 191797 ttccatcattatcatcacta 191816
>gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, complete sequence Length = 185255 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ttcaagcatgtatttgttat 272 |||||||||||||||||||| Sbjct: 27131 ttcaagcatgtatttgttat 27112
>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204560 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agatccttatgtgaacctgg 167 |||||||||||||||||||| Sbjct: 190390 agatccttatgtgaacctgg 190371
>ref|XM_625586.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_4240), partial mRNA Length = 2385 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 catcattatcatcactatta 573 |||||||||||||||||||| Sbjct: 1600 catcattatcatcactatta 1581
>gb|AF095947.1|AF095947 Borrelia valaisiana strain M53 outer surface protein A precursor (ospA) gene, complete cds Length = 822 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gtgatggaagcggaaaagct 45 |||||||||||||||||||| Sbjct: 458 gtgatggaagcggaaaagct 477
>gb|AF095943.1|AF095943 Borrelia valaisiana strain M7 outer surface protein A precursor (ospA) gene, complete cds Length = 822 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gtgatggaagcggaaaagct 45 |||||||||||||||||||| Sbjct: 458 gtgatggaagcggaaaagct 477
>gb|AC021325.5|AC021325 Homo sapiens chromosome , clone RP11-23N15, complete sequence Length = 180568 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ttcaagcatgtatttgttat 272 |||||||||||||||||||| Sbjct: 133732 ttcaagcatgtatttgttat 133713
>gb|AF274942.1|AF274942 Homo sapiens PNAS-17 mRNA, complete cds Length = 1081 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 500 ttccatcattatcatcacta 519
>gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complete sequence Length = 212104 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 aacaatattaatcatcatga 295 |||||||||||||||||||| Sbjct: 152933 aacaatattaatcatcatga 152914
>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 91720 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 catgtatttgttattagaac 278 |||||||||||||||||||| Sbjct: 44302 catgtatttgttattagaac 44321
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 ataaatgatttatactctga 413 |||||||||||||||||||| Sbjct: 2721689 ataaatgatttatactctga 2721708
>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete sequences Length = 186185 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 atttgttattagaacaatat 283 |||||||||||||||||||| Sbjct: 120413 atttgttattagaacaatat 120432
>gb|AF120992.1|HSMETHYL5 Homo sapiens methyl-CpG binding protein 2 (MBD2) gene, exon 5 Length = 682 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ttcaagcatgtatttgttat 272 |||||||||||||||||||| Sbjct: 549 ttcaagcatgtatttgttat 530
>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 atttgttattagaacaatat 283 |||||||||||||||||||| Sbjct: 2996 atttgttattagaacaatat 3015
>emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chromosome 2, complete sequence Length = 199317 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tattagataaatgatttata 407 |||||||||||||||||||| Sbjct: 174606 tattagataaatgatttata 174587
>gb|AC004070.1|AC004070 Human Chromosome X, complete sequence Length = 110192 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 ttccatcattatcatcacta 570 |||||||||||||||||||| Sbjct: 57306 ttccatcattatcatcacta 57287
>dbj|AP000705.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B745D19, LL56-APP region, complete sequence Length = 145869 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 atttgttattagaacaatat 283 |||||||||||||||||||| Sbjct: 103470 atttgttattagaacaatat 103489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,952,844 Number of Sequences: 3902068 Number of extensions: 4952844 Number of successful extensions: 88880 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88780 Number of HSP's gapped (non-prelim): 100 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)