ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3h19 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_ACIAD (Q6FF40) Translation initiation factor IF-2| Length = 899 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = -2 Query: 548 NPAKVNRGVENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPK----VSRE 381 N K G E+ ++T++R T +AST+ KA+T V ++K + TKP + Sbjct: 48 NHLKKIHGQESGAGKITLKRKTTSTAKVASTSGKAKTINVEVRKKHTFTKPNPEQIAAEA 107 Query: 380 KVQQLQENPVEP 345 K +Q E P Sbjct: 108 KARQETEERTRP 119
>SPKB_SYNY3 (P74297) Serine/threonine-protein kinase B (EC 2.7.11.1)| Length = 574 Score = 33.1 bits (74), Expect = 0.53 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Frame = +2 Query: 131 FHDTLSNSTFHEAHTSL--FTDCKDKNKKMSNRSAMDQYFI*SDRRGSRAESCLIFNTWF 304 + L+N+ F +A + F + KN + D YF +D RG+ + F Sbjct: 472 YQANLTNANFEQAELTRADFGKARLKNVIFKGANLSDAYFGYADLRGADLRGANLNGVNF 531 Query: 305 SSKGFQGRKFSRGGVLLGSLAAAVPFLLKLLVLSWR 412 QG FS G LGS A P LKL +WR Sbjct: 532 KYANLQGANFS--GADLGS-AKVSPEQLKLAKTNWR 564
>GP27_BPSP1 (P06228) Gene 27 protein| Length = 155 Score = 32.7 bits (73), Expect = 0.69 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -2 Query: 494 QRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVEP 345 ++ TK + +TAK E + A K K +K KPK S+ K + ENP P Sbjct: 65 EKPTTKKTTAKKSTAKEEKKETAPKAKETKAKPK-SKPKKAKAPENPNLP 113
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 31.2 bits (69), Expect = 2.0 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Frame = -2 Query: 515 NKPRVTVQRLVTKVPSLASTTAKAET-RPVATKQKTSK---TKPKVSREKVQQL 366 +KP T ++ T++P TT KA T +P TK T+K TKP +++ QL Sbjct: 71 SKP-TTPKQTTTQLPCTTPTTTKATTTKPTTTKATTTKATTTKPTTTKQTTTQL 123 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Frame = -2 Query: 512 KPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSK---TKPKVSREKVQQLQENPVEPP 342 KP T + +TT T+P TK T+K TKP ++ + P P Sbjct: 202 KPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTTK----PTTPK 257 Query: 341 PC 336 PC Sbjct: 258 PC 259
>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 483 HKSSLPSIYHCKGGNATCRYKTENLQDKTKSFKRKGTAAAREP 355 H+SS ++++ +G CR K E Q+K + K K AA EP Sbjct: 137 HRSSAQNVHNDRGKAVRCREKKE--QNKGREEKNKSPAAVTEP 177
>NKX32_HUMAN (P78367) Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog| 1) Length = 333 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +2 Query: 299 WFSSKGFQGRKFSRGGVLLGSLAAAVPFLLKLLVLSWRFSVL*RQVAFPPLQW*MLGREL 478 WF ++ ++ ++ LL S AA +K+LV + L +V PP Sbjct: 253 WFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPS--------- 303 Query: 479 L*PISGQ*P*VYYFPHLCLP 538 L P+ YY+P+ CLP Sbjct: 304 LLPLQPS----YYYPYYCLP 319
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 467 LASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVEPPP 339 L ++ + E P ++ KT + KP+V + +++L+E PPP Sbjct: 189 LEESSHEPEPEP-ESETKTEELKPQVEEKNLEELEEKSTTPPP 230
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = -2 Query: 545 PAKVNRGVENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKVQQL 366 PA G N KP V P A A RP + K KP ++ KV + Sbjct: 699 PAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP-ITEAKVAEK 757 Query: 365 QENPVEP 345 + +P +P Sbjct: 758 RTSPSKP 764
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 402 CLGGFLFCSDRSRFRLCSGRC*GGNFCDQSLDSN 503 CL GFL DR ++R CSG C C + D + Sbjct: 4294 CLPGFL--GDRCQYRQCSGYCENFGTCQMAADGS 4325
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 29.3 bits (64), Expect = 7.7 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 467 LASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVEPPP 339 L ++ + E P ++ KT + KP+V + +++L+E PPP Sbjct: 189 LEESSHEPEPEP-ESETKTEELKPQVEEKHLEELEEKSATPPP 230
>KKQ8_YEAST (P36004) Probable serine/threonine-protein kinase YKL168C (EC| 2.7.11.1) Length = 734 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1 Query: 25 TQELKSLNMKKLSNNIHRMLKDKLKEKNIATKEII---IPRYFEQFNFP 162 + ELK +N LS+ IH+ L++ L+EKN+ E I P + + + P Sbjct: 378 SDELKLIN--SLSSRIHKSLQNYLQEKNLKPAECIGEQAPTFQDNYGHP 424
>YMT5_YEAST (Q04214) Transposon Ty1 protein B| Length = 1328 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = -2 Query: 533 NRGVENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKV----QQL 366 N+ V + T +R++ + PS+ ++++++ + KTS T PK + E+ L Sbjct: 647 NKTVPQTSEQETEKRIIHRSPSIDTSSSESNSLHHVVPIKTSDTCPKENTEESIIADLPL 706 Query: 365 QENPVEPP 342 + P EPP Sbjct: 707 PDLPPEPP 714
>IF2_NEIMB (Q9JYD2) Translation initiation factor IF-2| Length = 962 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = -2 Query: 542 AKVNRGVENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQ 363 AK+ NK + Q+ T AKAET PVA + K ++ + + Sbjct: 140 AKLKAAKAGNKAKPAAQK---------PTEAKAETAPVAAETKPAEESKAEKAQADKMPS 190 Query: 362 ENPVEP 345 E P EP Sbjct: 191 EKPAEP 196
>NKX32_MOUSE (P97503) Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog| 1) Length = 333 Score = 28.9 bits (63), Expect = 10.0 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +2 Query: 299 WFSSKGFQGRKFSRGGVLLGSLAAAVPFLLKLLVLSWRFSVL*RQVAFPPLQW*MLGREL 478 WF ++ ++ ++ LL S AA +K+LV + L +V PP Sbjct: 253 WFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRLYLPGEVLRPPS--------- 303 Query: 479 L*PISGQ*P*VYYFPHLCLP 538 L P+ YY+P+ CLP Sbjct: 304 LLPLQPS----YYYPYYCLP 319
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -2 Query: 521 ENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVE 348 E NK R+ + + TK P A E + ++ + K KV +EKV + ++P+E Sbjct: 811 ETNKIRIKLTK--TKAPKEADVDKDKENKEPQEPKEPKEPKEKVIKEKVVEEPKDPLE 866
>YCF1B_MARPO (P12223) Hypothetical 57 kDa protein ycf1 (ORF 464)| Length = 464 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Frame = -3 Query: 460 LPLQRRK----RDLSLQNRKPPRQNQKFQEKRYSSCK 362 LP +RRK L+ +N+K + NQKF +K++S K Sbjct: 382 LPKRRRKFRILNSLTSKNKKNTQLNQKFVQKKFSKTK 418 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,224,210 Number of Sequences: 219361 Number of extensions: 1494318 Number of successful extensions: 4340 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4337 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
