ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 0.22
2ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 1.1
3ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 28 5.4

>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 99  SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 275
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



to top

>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 142 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 297
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169



to top

>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 142 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRS 285
           ++ ++SS+ LS+ RGI       S  S+I+ P+P+      + RIYRS
Sbjct: 121 RDVDESSVTLSTCRGIRGLIIVRSNLSYIIEPVPN---SDSQHRIYRS 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,401,121
Number of Sequences: 219361
Number of extensions: 724318
Number of successful extensions: 1178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top