ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3h14 |
|---|---|
| Clone Library Name | barley_pub |
>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)| (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36) Length = 1121 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = -2 Query: 438 DAKRQVVIHTEDLRAEVTVPCWDD-VAVPNTETIEYRSSGKKSIGYVLDEWDEEYDRGKA 262 D ++++ ++ D V WD ++ + + IE S + V+D+WDEE+DRGK Sbjct: 1022 DVVQELLKYSSDKAYGRKVLTWDGKMSAVSQDAIE--DSRQARTETVVDDWDEEFDRGKE 1079 Query: 261 KKVRKAKEDE 232 KK++K K ++ Sbjct: 1080 KKIKKFKREK 1089
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 35.4 bits (80), Expect = 0.11 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Frame = -2 Query: 558 ASVSSENDTRNSKSGTSASTGLPKLGSSSSANQAHSRNNVDAKRQVVIHTEDLRAEVTVP 379 +S SSE+++ + S+S+ SSS++ + S + + K++ + ++ + Sbjct: 39 SSSSSESESESESESESSSSSSSSDSESSSSSSSDSESEAETKKEESKDSSSSSSDSSSD 98 Query: 378 CWDDVAVPNT---ETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAKEDEDDDGTNPF 208 ++ T E+ E SS S E ++E K +K A+E+ED++ +N Sbjct: 99 EEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKK 158 Query: 207 Q 205 Q Sbjct: 159 Q 159
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 32.3 bits (72), Expect = 0.92 Identities = 22/56 (39%), Positives = 28/56 (50%) Frame = -2 Query: 396 AEVTVPCWDDVAVPNTETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAKEDED 229 A VPC D AV T+ Y S + I D EE +GK K+ RK K+D+D Sbjct: 3559 ANSNVPCGQDPAV--TQGQNYSGSSQSLIQLYSDIIPEE--KGKKKRTRKKKKDDD 3610
>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)| (MyT1-L) Length = 1186 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = -2 Query: 297 DEWDEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 166 DE DEE DR + +++ + ED+D+DG + E +E++ Sbjct: 121 DEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEE 164
>MYPT1_MOUSE (Q9DBR7) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) Length = 1004 Score = 31.6 bits (70), Expect = 1.6 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Frame = -2 Query: 531 RNSKSGTSASTGLPKLGSSSSANQAHSRNNVDAKRQVVIHTEDLRAEVTVPCWDDV---A 361 R+ S TS + P GSSS+ Q+ + N + A+ + VT+P V A Sbjct: 584 RSLPSSTSTAAKTPP-GSSSAGTQSSTSNRLWAEDSTEKEKDSAPTAVTIPVAPTVVNAA 642 Query: 360 VPNTETIEYRSSG------KKSIGYVLDEWDEEYDRGKAKKVRKAKE 238 P+T T+ ++G ++ Y+ DEE + + + R+A++ Sbjct: 643 APSTTTLTTTTAGTVSEVRERRRSYLTPVRDEESESQRKARSRQARQ 689
>SAN1_YEAST (P22470) Protein SAN1| Length = 610 Score = 30.0 bits (66), Expect = 4.6 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = -2 Query: 297 DEWDEEYDRGKAKKVRKAKEDEDDDGT 217 DE+++E D KAK+ R ++ +E+ +GT Sbjct: 170 DEYEDEVDSTKAKRKRDSENEEESEGT 196
>HSP90_PODAN (O43109) Heat shock protein 90 homolog (Suppressor of vegetative| incompatibility MOD-E) Length = 701 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = -2 Query: 369 DVAVPN--TETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAKEDEDD 226 +V VP+ ET+E K I V D+ +++ + K KKV++ K +E++ Sbjct: 212 EVEVPDEEAETVEEGDDKKPKIEEVEDDEEDKEKKPKTKKVKEVKTEEEE 261
>MUTS_ACIAD (Q6FC54) DNA mismatch repair protein mutS| Length = 881 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 235 RGRRRHEPLPG*GKPRISAKGETKTLEQAGQTTSLGE 125 RG+ EP+P G P +A+G L +AGQT ++ E Sbjct: 61 RGKANGEPIPMAGVPYHAAEGYLARLVRAGQTVAICE 97
>SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.11.1) (Protein zeste-white| 3) Length = 1067 Score = 29.3 bits (64), Expect = 7.8 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 10/125 (8%) Frame = -2 Query: 558 ASVSSENDTRNSKSGTSASTGLPKLGSSSSANQAHSRNNVDAKRQVVIHTEDLRAEVTVP 379 A +S N T + +SG +++ LGS+ S +A + V A + + + D V Sbjct: 143 AGKASHNATSSKESGAQSNSSSESLGSNCS--EAQEQQRVRASSALELSSVDTPVIVGGV 200 Query: 378 CWDDVAVPNTETIEYRSSGKKSI-GYVLDEWDEEYD---------RGKAKKVRKAKEDED 229 ++ + I+Y+S+ G+ +++ +E D + ++ + +E+E+ Sbjct: 201 VSGGNSILRSR-IKYKSTNSTGTQGFDVEDRIDEVDICDDDDVDCDDRGSEIEEEEEEEE 259 Query: 228 DDGTN 214 DDG N Sbjct: 260 DDGVN 264
>SYV_METCA (Q606C1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +1 Query: 1 SNNKAEREQTRRXKEGVLEK--QAIQHFLSFLSTESSWGGVSSARLATWSGRLAP 159 S N+AER TR+ GVLE + F+ F+ TE W R+A +G AP Sbjct: 696 SGNEAERRGTRQTLAGVLESLLRLAHPFMPFI-TEEIW-----TRVAPLTGAFAP 744
>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing| FSH-like protein FSRG2) Length = 726 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = -2 Query: 552 VSSENDTRNSKSGTSASTGLPKLGSSSSANQAHSRNN 442 ++S+ T+ KSG++ S G +L SSSS+ A S ++ Sbjct: 680 LNSKKPTKKEKSGSAPSGGPSRLSSSSSSESASSSSS 716
>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)| Length = 511 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = -2 Query: 288 DEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 166 D+E + K KK +K K D+D+D + +A+ +++K+ Sbjct: 445 DDEEEEKKEKKEKKRKRDDDEDSKDSKKAKKEKKDKKEKKE 485
>ATL5G_ARATH (Q9LF64) Probable RING-H2 finger protein ATL5G| Length = 362 Score = 29.3 bits (64), Expect = 7.8 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Frame = -2 Query: 405 DLRAEVTVP-----CWDDVAVPNTETIEYRSSGKKSIGYVLDEW-DEEYDRGKAKKVRKA 244 D R+E+ +P D+ ++P ++ S SI VL E DEE + G ++ Sbjct: 252 DARSELQLPEERRETKDEDSLPIRRSVSLNSGVVVSIADVLREIEDEEGESGGVGTSQRR 311 Query: 243 KEDEDDDGTNPFQAEANHVS 184 +E ED DG EAN S Sbjct: 312 EEGEDGDGKTIPPTEANQRS 331
>VCOM_ADE02 (P03267) Minor core protein (Protein V) (pV)| Length = 369 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = -2 Query: 288 DEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEK 169 +++Y K K+V+K K+D+DDD + + E H +A + + Sbjct: 26 EQDYKPRKLKRVKKKKKDDDDDELDD-EVELLHATAPRRR 64
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 29.3 bits (64), Expect = 7.8 Identities = 20/60 (33%), Positives = 28/60 (46%) Frame = -2 Query: 396 AEVTVPCWDDVAVPNTETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAKEDEDDDGT 217 A ++PC D + T Y S + I D EE +GK K+ RK K D+D + T Sbjct: 3564 ANSSLPCGQDSTI--THGHSYPGSTQSLIQLYSDIIPEE--KGKKKRTRKKKRDDDAEST 3619
>CN129_MOUSE (Q8BGR8) UPF0279 protein C14orf129 homolog| Length = 139 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 7/42 (16%) Frame = -2 Query: 387 TVPCWDDVAVPNTET-------IEYRSSGKKSIGYVLDEWDE 283 ++PC DDVA N ET +E +G + +GY D+ ++ Sbjct: 56 SMPCADDVAYINVETKERNRYCLELTEAGLRVVGYAFDQVED 97
>CASQ2_RAT (P51868) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle| isoform) Length = 413 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 Query: 300 LDEWDEEYDRGKAKKVRKAKEDEDDDGTN 214 L++W E+ GK EDEDDDG N Sbjct: 358 LEDWIEDVLSGKINTEDDDNEDEDDDGDN 386
>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12| (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) Length = 539 Score = 29.3 bits (64), Expect = 7.8 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Frame = -2 Query: 540 NDTRNSKSGTSAST---GLPKLGSSSSANQAHSRNNVDAK----RQVVIHTEDLRAEVTV 382 N+T NS S AS +P Q +RNN + +QV+ E+ E Sbjct: 93 NNTSNSNSSNPASIPTENVPNSSQQQQQQQQQTRNNSNKFSNMIKQVLTPEENQEYE--- 149 Query: 381 PCWDDVAVPNTETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAK 241 W + V +T E + K++I + E +++ D G +++++ K Sbjct: 150 KLWQNFQVRHTSIKEKETYLKQNIDRLEQEINKQTDEGPKQQLQEKK 196
>RS5_BIFLO (P59122) 30S ribosomal protein S5| Length = 233 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -1 Query: 268 KGKEGQKSEGRRGRRRH 218 KG+ GQ+ EGRRG RR+ Sbjct: 19 KGRRGQRGEGRRGERRN 35
>HSP3_MURBR (P83213) Sperm protamine P3| Length = 54 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 277 RPWKGKEGQKSEGRRGRRRHEPLPG*GKPRISAKGE 170 R KGK G+K +G++ RRR G GK + KG+ Sbjct: 5 RRGKGKGGKKKKGKKRRRRGRKGKGKGKKKGKRKGK 40
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 24.3 bits (51), Expect(2) = 9.7 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -1 Query: 274 PWKGKEGQKSEGRRGRRRHEPLP 206 P K + GRRGR R EP P Sbjct: 54 PTGSKPRKPGAGRRGRPREEPSP 76 Score = 23.1 bits (48), Expect(2) = 9.7 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -3 Query: 185 QRERRNKDLGASRPDHVARRAEETPPQEDSVERKERK 75 +R+ R L A PD EE +ED E E K Sbjct: 99 KRDPRETFLVARAPDAEDEEEEEEEDEEDEEEEAEEK 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,387,086 Number of Sequences: 219361 Number of extensions: 1361370 Number of successful extensions: 5389 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4962 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5344 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
