ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARX1_CANGA (Q6FL44) Probable metalloprotease ARX1 (EC 3.-.-.-) (... 32 1.3
2HGBC_HAEIN (Q9KIV0) Hemoglobin-binding protein C precursor 31 1.8
3YATE_SCHPO (Q09779) Hypothetical protein C1D4.14 in chromosome I 30 3.0
4NADB_ANASP (Q8YXJ6) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Q... 29 6.7
5MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA... 29 6.7
6MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA... 29 6.7

>ARX1_CANGA (Q6FL44) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 588

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 19  KATSITVCHLDASISANSELDRVYGPDQVQTPNWKPNARE 138
           + +++ +C  D S+S   EL R+ G  +   P+W  +ARE
Sbjct: 502 ECSTVILCGSDVSVSGKPELFRLTGGSKTAQPSWVHSARE 541



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>HGBC_HAEIN (Q9KIV0) Hemoglobin-binding protein C precursor|
          Length = 993

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +3

Query: 24  YINYSLSPRCIHLSKF*ARQSIRTRPGTNSQLE---TKCTGNRNPTV*LLTN---TRKDV 185
           Y N+S +P    L    + Q I+TR  T+   +   T C G  NPT   LTN   TR++ 
Sbjct: 332 YENFSQTPFWDTLKLTYSDQRIKTRARTDEYCDAGVTHCQGTENPTGLKLTNGKITRRNG 391

Query: 186 TDYSIEHQVKSEMSRGEGKK 245
           TD     Q K + +  +G K
Sbjct: 392 TDL----QFKEKGTAADGTK 407



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>YATE_SCHPO (Q09779) Hypothetical protein C1D4.14 in chromosome I|
          Length = 1628

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
 Frame = +3

Query: 78   RQSIRTRPGTN-------SQLETKCTGNRNPTV*LLTNTRKDVTDYSIEH------QVKS 218
            R+++RTR  TN       S+L    + +R P     TN   D       H      Q ++
Sbjct: 1399 RRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQN 1458

Query: 219  EMSRGEGKKRKEGRDYQSGRISAFMRICETNITNLS 326
              +R E + +K  R  Q+G ++   R+   N TN+S
Sbjct: 1459 LNARREHESQKSDRWRQNGNVNRNPRVSNNNSTNVS 1494



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>NADB_ANASP (Q8YXJ6) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate|
           synthetase B)
          Length = 578

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
 Frame = +2

Query: 293 AHLRD----QYHKSFLLTSMFDGWVVAQKSAPHDSTVINKVARRFASDHVPLQGALPWD- 457
           A LRD    Q+H + L     D +++++      + +++   RRFA D+ P     P D 
Sbjct: 241 AILRDLEFVQFHPTALTKPGADRFLISEAVRGEGAHLVDNEGRRFAFDYHPAGELAPRDV 300

Query: 458 -PRMEFNH-------PAT*HSW 499
             R  F+H       PAT H W
Sbjct: 301 VSRAIFSHLQRTAVDPATAHVW 322



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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 128 FGFQLGVCTWSGPYTLSSSEFAEMD 54
           FG Q+ V  W GP T S +EF  +D
Sbjct: 402 FGMQIEVTAWIGPETESENEFRPLD 426



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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 128 FGFQLGVCTWSGPYTLSSSEFAEMD 54
           FG Q+ V  W GP T S +EF  +D
Sbjct: 403 FGMQIEVTAWVGPETESENEFRPLD 427


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,961,616
Number of Sequences: 219361
Number of extensions: 1578124
Number of successful extensions: 4526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4525
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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