ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing pro... 28 5.7
2PARC_MOUSE (Q80TT8) p53-associated parkin-like cytoplasmic protein 28 5.7
3IG2R_HUMAN (P09565) Putative insulin-like growth factor 2-associ... 28 7.5
4SENP2_RAT (Q9EQE1) Sentrin-specific protease 2 (EC 3.4.22.-) (Se... 27 9.8

>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 DELHRLRRRPPTFGPSASVPSPHSDAS 283
           D  H++ R+PP F  SAS P P    S
Sbjct: 439 DLAHKIGRKPPAFYTSASPPGPQFQGS 465



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>PARC_MOUSE (Q80TT8) p53-associated parkin-like cytoplasmic protein|
          Length = 1865

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 23   KSKTTCLERCRQSNCTNVRLSFSCLYMYKTE*TEFLDKFQKQ 148
            KS T   + CR        L+++C+Y + ++ TE++D  ++Q
Sbjct: 1666 KSFTFLQDACRALEQARKVLAYACVYSFYSQDTEYMDVVEQQ 1707



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>IG2R_HUMAN (P09565) Putative insulin-like growth factor 2-associated protein|
           (Insulin-like growth factor II-associated protein)
          Length = 84

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 229 APDIWPVGVCAQSP**RFPRCHNCLTHL 312
           AP  W +    Q P  + P CHNC TH+
Sbjct: 20  APCEWAIRNIGQKP--KEPNCHNCGTHI 45



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>SENP2_RAT (Q9EQE1) Sentrin-specific protease 2 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP2) (Axin-associating
           molecule) (Axam)
          Length = 588

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 228 RRRSLWSSSVSTRADSFEVSVFKQALTCF*NLSKNSVHSVLYIY 97
           +RR   SS  ST  D+ E+   +  L CF +  KNS+++   ++
Sbjct: 28  KRRRSSSSLFSTAVDTDEIPAKRPRLDCFIHQVKNSLYNAASLF 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,847,953
Number of Sequences: 219361
Number of extensions: 799082
Number of successful extensions: 2273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2273
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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