ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC137128.17| Mus musculus chromosome 3, clone RP24-271G16, co... 44 0.28
2gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, co... 42 1.1
3gb|AE015931.1| Staphylococcus epidermidis ATCC 12228 plasmid pSE... 42 1.1
4gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 4.3
5emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in ... 40 4.3
6emb|CR788242.3| Zebrafish DNA sequence from clone DKEY-239H16 in... 40 4.3
7gb|AC069366.8| Homo sapiens chromosome 17, clone RP11-720N19, co... 40 4.3
8gb|AC034176.8| Homo sapiens BAC clone RP11-755F5 from 4, complet... 40 4.3
9gb|AY599307.1| Eupelmus sp. D1358 28S ribosomal RNA gene, partia... 40 4.3
10gb|AC157772.4| Mus musculus chromosome 15, clone RP24-323B16, co... 40 4.3
11gb|AC022080.37| Homo sapiens 12 BAC RP11-820K3 (Roswell Park Can... 40 4.3
12gb|AC146656.3| Otolemur garnettii clone CH256-389C8, complete se... 40 4.3
13gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, c... 40 4.3
14emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2... 40 4.3

>gb|AC137128.17| Mus musculus chromosome 3, clone RP24-271G16, complete sequence
          Length = 182140

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 162   taaaaactgaaacttcaaaaga 183
             ||||||||||||||||||||||
Sbjct: 74172 taaaaactgaaacttcaaaaga 74193



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>gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, complete sequence
          Length = 170006

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 7     gtatagaagagtgttaaaatctaaaacaa 35
             |||||||||||  ||||||||||||||||
Sbjct: 18877 gtatagaagaggcttaaaatctaaaacaa 18849



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>gb|AE015931.1| Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-02, complete
            sequence
          Length = 4679

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 161  ttaaaaactgaaacttcaaaa 181
            |||||||||||||||||||||
Sbjct: 2817 ttaaaaactgaaacttcaaaa 2797



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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      agaagagtgttaaaatctaa 30
               ||||||||||||||||||||
Sbjct: 1469075 agaagagtgttaaaatctaa 1469094



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>emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in linkage group 13, complete
              sequence
          Length = 217981

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 16     agtgttaaaatctaaaacaacatgtcta 43
              ||||| ||| ||||||||||||||||||
Sbjct: 157858 agtgtaaaactctaaaacaacatgtcta 157831



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>emb|CR788242.3| Zebrafish DNA sequence from clone DKEY-239H16 in linkage group 13,
              complete sequence
          Length = 143940

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     aatctaaaacaacatgtcta 43
              ||||||||||||||||||||
Sbjct: 117606 aatctaaaacaacatgtcta 117625



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>gb|AC069366.8| Homo sapiens chromosome 17, clone RP11-720N19, complete sequence
          Length = 180754

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   cttggacaagtttcagaaac 146
             ||||||||||||||||||||
Sbjct: 76402 cttggacaagtttcagaaac 76421



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>gb|AC034176.8| Homo sapiens BAC clone RP11-755F5 from 4, complete sequence
          Length = 193100

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ttgtctatatatgtataaga 110
             ||||||||||||||||||||
Sbjct: 56436 ttgtctatatatgtataaga 56455



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>gb|AY599307.1| Eupelmus sp. D1358 28S ribosomal RNA gene, partial sequence
          Length = 961

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 acgccgacggcccccgacat 239
           ||||||||||||||||||||
Sbjct: 283 acgccgacggcccccgacat 264



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>gb|AC157772.4| Mus musculus chromosome 15, clone RP24-323B16, complete sequence
          Length = 182149

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 158  tgcttaaaaactgaaacttcaaaa 181
            ||||||||||||||||| ||||||
Sbjct: 2578 tgcttaaaaactgaaacatcaaaa 2601



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>gb|AC022080.37| Homo sapiens 12 BAC RP11-820K3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178217

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    acgcatctcaagggggcaaa 323
              ||||||||||||||||||||
Sbjct: 111599 acgcatctcaagggggcaaa 111618



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>gb|AC146656.3| Otolemur garnettii clone CH256-389C8, complete sequence
          Length = 185109

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     agaagagtgttaaaatctaa 30
              ||||||||||||||||||||
Sbjct: 108759 agaagagtgttaaaatctaa 108778



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>gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, complete sequence
          Length = 150945

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    tgcttaaaaactgaaacttcaaaa 181
              ||||||||||||||||| ||||||
Sbjct: 150547 tgcttaaaaactgaaacatcaaaa 150570



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>emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2251F13 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 93432

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  agtttcagaaacaagtgaga 154
            ||||||||||||||||||||
Sbjct: 6853 agtttcagaaacaagtgaga 6872


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,122,732
Number of Sequences: 3902068
Number of extensions: 3122732
Number of successful extensions: 55253
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55220
Number of HSP's gapped (non-prelim): 33
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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