Clone Name | rbasd3h10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC137128.17| Mus musculus chromosome 3, clone RP24-271G16, complete sequence Length = 182140 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 taaaaactgaaacttcaaaaga 183 |||||||||||||||||||||| Sbjct: 74172 taaaaactgaaacttcaaaaga 74193
>gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, complete sequence Length = 170006 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 7 gtatagaagagtgttaaaatctaaaacaa 35 ||||||||||| |||||||||||||||| Sbjct: 18877 gtatagaagaggcttaaaatctaaaacaa 18849
>gb|AE015931.1| Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-02, complete sequence Length = 4679 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 ttaaaaactgaaacttcaaaa 181 ||||||||||||||||||||| Sbjct: 2817 ttaaaaactgaaacttcaaaa 2797
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 agaagagtgttaaaatctaa 30 |||||||||||||||||||| Sbjct: 1469075 agaagagtgttaaaatctaa 1469094
>emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in linkage group 13, complete sequence Length = 217981 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 16 agtgttaaaatctaaaacaacatgtcta 43 ||||| ||| |||||||||||||||||| Sbjct: 157858 agtgtaaaactctaaaacaacatgtcta 157831
>emb|CR788242.3| Zebrafish DNA sequence from clone DKEY-239H16 in linkage group 13, complete sequence Length = 143940 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aatctaaaacaacatgtcta 43 |||||||||||||||||||| Sbjct: 117606 aatctaaaacaacatgtcta 117625
>gb|AC069366.8| Homo sapiens chromosome 17, clone RP11-720N19, complete sequence Length = 180754 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cttggacaagtttcagaaac 146 |||||||||||||||||||| Sbjct: 76402 cttggacaagtttcagaaac 76421
>gb|AC034176.8| Homo sapiens BAC clone RP11-755F5 from 4, complete sequence Length = 193100 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgtctatatatgtataaga 110 |||||||||||||||||||| Sbjct: 56436 ttgtctatatatgtataaga 56455
>gb|AY599307.1| Eupelmus sp. D1358 28S ribosomal RNA gene, partial sequence Length = 961 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 acgccgacggcccccgacat 239 |||||||||||||||||||| Sbjct: 283 acgccgacggcccccgacat 264
>gb|AC157772.4| Mus musculus chromosome 15, clone RP24-323B16, complete sequence Length = 182149 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 tgcttaaaaactgaaacttcaaaa 181 ||||||||||||||||| |||||| Sbjct: 2578 tgcttaaaaactgaaacatcaaaa 2601
>gb|AC022080.37| Homo sapiens 12 BAC RP11-820K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178217 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 acgcatctcaagggggcaaa 323 |||||||||||||||||||| Sbjct: 111599 acgcatctcaagggggcaaa 111618
>gb|AC146656.3| Otolemur garnettii clone CH256-389C8, complete sequence Length = 185109 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 agaagagtgttaaaatctaa 30 |||||||||||||||||||| Sbjct: 108759 agaagagtgttaaaatctaa 108778
>gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, complete sequence Length = 150945 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 tgcttaaaaactgaaacttcaaaa 181 ||||||||||||||||| |||||| Sbjct: 150547 tgcttaaaaactgaaacatcaaaa 150570
>emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2251F13 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 93432 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agtttcagaaacaagtgaga 154 |||||||||||||||||||| Sbjct: 6853 agtttcagaaacaagtgaga 6872 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,122,732 Number of Sequences: 3902068 Number of extensions: 3122732 Number of successful extensions: 55253 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55220 Number of HSP's gapped (non-prelim): 33 length of query: 327 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 305 effective length of database: 17,147,199,772 effective search space: 5229895930460 effective search space used: 5229895930460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)