Clone Name | rbasd3h06 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ310841.1|HVU310841 Hordeum vulgare partial CA2 gene for P-type ATPase Length = 1686 Score = 712 bits (359), Expect = 0.0 Identities = 362/363 (99%) Strand = Plus / Minus Query: 268 tcaggaggacccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggcc 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 tcaggaggacccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggcc 1627 Query: 328 aaggagcacgctggcgagccactggagactggtgagaggcgtcgtgttggcaaactcgcc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 aaggagcacgctggcgagccactggagactggtgagaggcgtcgtgttggcaaactcgcc 1567 Query: 388 gaggaactggaccatgatgaactggaagacgaccgtgctgctgaggacacacatgaagac 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 gaggaactggaccatgatgaactggaagacgaccgtgctgctgaggacacacatgaagac 1507 Query: 448 atagttgttcagaatgcccttgagcacattgagcttctccatctccctcgaacttatctc 507 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1506 atagttgttcagcatgcccttgagcacattgagcttctccatctccctcgaacttatctc 1447 Query: 508 attgaacacctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagc 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 attgaacacctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagc 1387 Query: 568 atcagagccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaac 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 atcagagccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaac 1327 Query: 628 aaa 630 ||| Sbjct: 1326 aaa 1324
>dbj|AK066259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H11, full insert sequence Length = 3668 Score = 293 bits (148), Expect = 4e-76 Identities = 274/316 (86%) Strand = Plus / Minus Query: 311 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgagaggcgtc 370 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| || || Sbjct: 3299 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgagtggtatc 3240 Query: 371 gtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgaccgtgctgctg 430 ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| || Sbjct: 3239 gtgttcgcaaactcgccgaggaattgcaccatgatgaactggaagactaccgtgctggtg 3180 Query: 431 aggacacacatgaagacatagttgttcagaatgcccttgagcacattgagcttctccatc 490 || |||| || |||||| ||||| ||||| |||||| | ||||| |||| |||||||||| Sbjct: 3179 agaacacccaagaagacgtagttcttcagtatgcccctcagcacgttgatcttctccatc 3120 Query: 491 tccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaataattgta 550 ||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 3119 tccctggagcttatctcattgaacacctggcagaagacaaacgagttgaaaataattgta 3060 Query: 551 ttcagcactatatcagcatcagagccttcaagcccaaaaaaggtttttccttgcgtctgg 610 || ||||| | |||||||||| ||| ||||| ||||| | | |||| |||||||||||| Sbjct: 3059 tttagcacaacttcagcatcagggccatcaaggccaaacatgcttttcccttgcgtctgg 3000 Query: 611 agataccacatgacaa 626 ||||||||||| |||| Sbjct: 2999 agataccacataacaa 2984
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 192 bits (97), Expect = 1e-45 Identities = 181/209 (86%) Strand = Plus / Minus Query: 311 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgagaggcgtc 370 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| || || Sbjct: 24524242 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgagtggtatc 24524183 Query: 371 gtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgaccgtgctgctg 430 ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| || Sbjct: 24524182 gtgttcgcaaactcgccgaggaattgcaccatgatgaactggaagactaccgtgctggtg 24524123 Query: 431 aggacacacatgaagacatagttgttcagaatgcccttgagcacattgagcttctccatc 490 || |||| || |||||| ||||| ||||| |||||| | ||||| |||| |||||||||| Sbjct: 24524122 agaacacccaagaagacgtagttcttcagtatgcccctcagcacgttgatcttctccatc 24524063 Query: 491 tccctcgaacttatctcattgaacacctg 519 ||||| || |||||||||||||||||||| Sbjct: 24524062 tccctggagcttatctcattgaacacctg 24524034 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 |||||||||||||| || |||||||||||||||||||| ||||| | |||||||||| | Sbjct: 24523431 acctggcagaagacaaacgagttgaaaataattgtatttagcacaacttcagcatcaggg 24523372 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaa 626 || ||||| ||||| | | |||| ||||||||||||||||||||||| |||| Sbjct: 24523371 ccatcaaggccaaacatgcttttcccttgcgtctggagataccacataacaa 24523320
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 192 bits (97), Expect = 1e-45 Identities = 181/209 (86%) Strand = Plus / Minus Query: 311 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgagaggcgtc 370 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| || || Sbjct: 24452448 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgagtggtatc 24452389 Query: 371 gtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgaccgtgctgctg 430 ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| || Sbjct: 24452388 gtgttcgcaaactcgccgaggaattgcaccatgatgaactggaagactaccgtgctggtg 24452329 Query: 431 aggacacacatgaagacatagttgttcagaatgcccttgagcacattgagcttctccatc 490 || |||| || |||||| ||||| ||||| |||||| | ||||| |||| |||||||||| Sbjct: 24452328 agaacacccaagaagacgtagttcttcagtatgcccctcagcacgttgatcttctccatc 24452269 Query: 491 tccctcgaacttatctcattgaacacctg 519 ||||| || |||||||||||||||||||| Sbjct: 24452268 tccctggagcttatctcattgaacacctg 24452240 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 |||||||||||||| || |||||||||||||||||||| ||||| | |||||||||| | Sbjct: 24451637 acctggcagaagacaaacgagttgaaaataattgtatttagcacaacttcagcatcaggg 24451578 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaa 626 || ||||| ||||| | | |||| ||||||||||||||||||||||| |||| Sbjct: 24451577 ccatcaaggccaaacatgcttttcccttgcgtctggagataccacataacaa 24451526
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 192 bits (97), Expect = 1e-45 Identities = 181/209 (86%) Strand = Plus / Minus Query: 311 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgagaggcgtc 370 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| || || Sbjct: 95273 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgagtggtatc 95214 Query: 371 gtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgaccgtgctgctg 430 ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| || Sbjct: 95213 gtgttcgcaaactcgccgaggaattgcaccatgatgaactggaagactaccgtgctggtg 95154 Query: 431 aggacacacatgaagacatagttgttcagaatgcccttgagcacattgagcttctccatc 490 || |||| || |||||| ||||| ||||| |||||| | ||||| |||| |||||||||| Sbjct: 95153 agaacacccaagaagacgtagttcttcagtatgcccctcagcacgttgatcttctccatc 95094 Query: 491 tccctcgaacttatctcattgaacacctg 519 ||||| || |||||||||||||||||||| Sbjct: 95093 tccctggagcttatctcattgaacacctg 95065 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 |||||||||||||| || |||||||||||||||||||| ||||| | |||||||||| | Sbjct: 94462 acctggcagaagacaaacgagttgaaaataattgtatttagcacaacttcagcatcaggg 94403 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaa 626 || ||||| ||||| | | |||| ||||||||||||||||||||||| |||| Sbjct: 94402 ccatcaaggccaaacatgcttttcccttgcgtctggagataccacataacaa 94351
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 163 bits (82), Expect = 9e-37 Identities = 202/242 (83%) Strand = Plus / Minus Query: 278 ccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggccaaggagcacg 337 ||||| ||||| ||||||||| | |||| || |||||||| | || || ||||||||| Sbjct: 11293 ccaactggaatcagcttgacggcagcggcaatgggcatcccagccagaccgaggagcacg 11234 Query: 338 ctggcgagccactggagactggtgagaggcgtcgtgttggcaaactcgccgaggaactgg 397 ||||| ||||||||| | |||| || ||||||||||||||||||||||| || ||||| Sbjct: 11233 ctggccagccactggtgtatggtcaggggcgtcgtgttggcaaactcgcctagaaactgc 11174 Query: 398 accatgatgaactggaagacgaccgtgctgctgaggacacacatgaagacatagttgttc 457 ||||||||||||||||||| |||||||||| | |||||| |||||| || ||||| | Sbjct: 11173 accatgatgaactggaagatgaccgtgctggtaaggacagccatgaacacgtagttccta 11114 Query: 458 agaatgcccttgagcacattgagcttctccatctccctcgaacttatctcattgaacacc 517 ||||||||||| || |||| |||||||||||||| || |||||||||||||||||| Sbjct: 11113 gtcatgcccttgagaacgttgatcttctccatctcccgagagcttatctcattgaacacc 11054 Query: 518 tg 519 || Sbjct: 11053 tg 11052 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| | ||||| Sbjct: 10718 acctgacagaagacgaatgagttgaaaatgattgtatttagcacaatatcagtaccagag 10659 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaa 626 ||||||||||||| ||| |||| |||||||| |||||||||||||| |||| Sbjct: 10658 tcttcaagcccaaagaagtttttcccttgcgtttggagataccacatcacaa 10607
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 163 bits (82), Expect = 9e-37 Identities = 202/242 (83%) Strand = Plus / Minus Query: 278 ccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggccaaggagcacg 337 ||||| ||||| ||||||||| | |||| || |||||||| | || || ||||||||| Sbjct: 90549 ccaactggaatcagcttgacggcagcggcaatgggcatcccagccagaccgaggagcacg 90490 Query: 338 ctggcgagccactggagactggtgagaggcgtcgtgttggcaaactcgccgaggaactgg 397 ||||| ||||||||| | |||| || ||||||||||||||||||||||| || ||||| Sbjct: 90489 ctggccagccactggtgtatggtcaggggcgtcgtgttggcaaactcgcctagaaactgc 90430 Query: 398 accatgatgaactggaagacgaccgtgctgctgaggacacacatgaagacatagttgttc 457 ||||||||||||||||||| |||||||||| | |||||| |||||| || ||||| | Sbjct: 90429 accatgatgaactggaagatgaccgtgctggtaaggacagccatgaacacgtagttccta 90370 Query: 458 agaatgcccttgagcacattgagcttctccatctccctcgaacttatctcattgaacacc 517 ||||||||||| || |||| |||||||||||||| || |||||||||||||||||| Sbjct: 90369 gtcatgcccttgagaacgttgatcttctccatctcccgagagcttatctcattgaacacc 90310 Query: 518 tg 519 || Sbjct: 90309 tg 90308 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| | ||||| Sbjct: 89974 acctgacagaagacgaatgagttgaaaatgattgtatttagcacaatatcagtaccagag 89915 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgacaa 626 ||||||||||||| ||| |||| |||||||| |||||||||||||| |||| Sbjct: 89914 tcttcaagcccaaagaagtttttcccttgcgtttggagataccacatcacaa 89863
>dbj|AK071938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083I02, full insert sequence Length = 1675 Score = 99.6 bits (50), Expect = 1e-17 Identities = 119/142 (83%) Strand = Plus / Minus Query: 484 ctccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaat 543 ||||||||| || || ||||| ||||||||||||||||||||||| || | |||||| || Sbjct: 1078 ctccatctctcttgagcttatttcattgaacacctggcagaagacaaaagtgttgaatat 1019 Query: 544 aattgtattcagcactatatcagcatcagagccttcaagcccaaaaaaggtttttccttg 603 |||||||| || || |||||||||| ||||||| |||||||| ||| ||| ||||| Sbjct: 1018 gattgtatttagtacaatatcagcatggtagccttccagcccaaacaagtgtttcccttg 959 Query: 604 cgtctggagataccacatgaca 625 || || ||||||||||||||| Sbjct: 958 agtttgtagataccacatgaca 937 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Minus Query: 362 agaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgacc 421 ||||| || ||||| || || ||||| ||||||||||| | |||||||||||||| || Sbjct: 1200 agaggtgtggtgttagcgaaatcgcccaggaactggactaggatgaactggaagaagatg 1141 Query: 422 gtgctgctgaggacac 437 |||| | ||||||||| Sbjct: 1140 gtgccggtgaggacac 1125
>dbj|AK065088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L20, full insert sequence Length = 3446 Score = 99.6 bits (50), Expect = 1e-17 Identities = 119/142 (83%) Strand = Plus / Minus Query: 484 ctccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaat 543 ||||||||| || || ||||| ||||||||||||||||||||||| || | |||||| || Sbjct: 2870 ctccatctctcttgagcttatttcattgaacacctggcagaagacaaaagtgttgaatat 2811 Query: 544 aattgtattcagcactatatcagcatcagagccttcaagcccaaaaaaggtttttccttg 603 |||||||| || || |||||||||| ||||||| |||||||| ||| ||| ||||| Sbjct: 2810 gattgtatttagtacaatatcagcatggtagccttccagcccaaacaagtgtttcccttg 2751 Query: 604 cgtctggagataccacatgaca 625 || || ||||||||||||||| Sbjct: 2750 agtttgtagataccacatgaca 2729 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Minus Query: 362 agaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgacc 421 ||||| || ||||| || || ||||| ||||||||||| | |||||||||||||| || Sbjct: 2992 agaggtgtggtgttagcgaaatcgcccaggaactggactaggatgaactggaagaagatg 2933 Query: 422 gtgctgctgaggacac 437 |||| | ||||||||| Sbjct: 2932 gtgccggtgaggacac 2917
>gb|AF195029.1|AF195029 Glycine max plasma membrane Ca2+-ATPase (SCA2) mRNA, complete cds Length = 3768 Score = 79.8 bits (40), Expect = 1e-11 Identities = 64/72 (88%) Strand = Plus / Minus Query: 483 tctccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaa 542 ||||||| ||||||||||| ||||||||||| ||||||||||| || || | |||||||| Sbjct: 3122 tctccatatccctcgaactaatctcattgaaaacctggcagaacacaaacgcgttgaaaa 3063 Query: 543 taattgtattca 554 ||| |||||||| Sbjct: 3062 taagtgtattca 3051
>gb|AC135557.5| Oryza sativa chromosome 3 BAC OJ1285_H07 genomic sequence, complete sequence Length = 113685 Score = 69.9 bits (35), Expect = 1e-08 Identities = 92/111 (82%) Strand = Plus / Plus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 |||||||||||||| || | |||||| || |||||||| || || |||||||||| || Sbjct: 13296 acctggcagaagacaaaagtgttgaatatgattgtatttagtacaatatcagcatggtag 13355 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgaca 625 ||||| |||||||| ||| ||| ||||| || || ||||||||||||||| Sbjct: 13356 ccttccagcccaaacaagtgtttcccttgagtttgtagataccacatgaca 13406 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Plus Query: 362 agaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgacc 421 ||||| || ||||| || || ||||| ||||||||||| | |||||||||||||| || Sbjct: 12954 agaggtgtggtgttagcgaaatcgcccaggaactggactaggatgaactggaagaagatg 13013 Query: 422 gtgctgctgaggacac 437 |||| | ||||||||| Sbjct: 13014 gtgccggtgaggacac 13029
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 1e-08 Identities = 92/111 (82%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 |||||||||||||| || | |||||| || |||||||| || || |||||||||| || Sbjct: 23154030 acctggcagaagacaaaagtgttgaatatgattgtatttagtacaatatcagcatggtag 23153971 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgaca 625 ||||| |||||||| ||| ||| ||||| || || ||||||||||||||| Sbjct: 23153970 ccttccagcccaaacaagtgtttcccttgagtttgtagataccacatgaca 23153920 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 5408089 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 5408030 Query: 419 accgtgctgctgaggac 435 || ||||||| |||||| Sbjct: 5408029 actgtgctgccgaggac 5408013 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Minus Query: 362 agaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgacc 421 ||||| || ||||| || || ||||| ||||||||||| | |||||||||||||| || Sbjct: 23154372 agaggtgtggtgttagcgaaatcgcccaggaactggactaggatgaactggaagaagatg 23154313 Query: 422 gtgctgctgaggacac 437 |||| | ||||||||| Sbjct: 23154312 gtgccggtgaggacac 23154297 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 agcttgacgacgacggcgat 309 |||||||||||||||||||| Sbjct: 22889643 agcttgacgacgacggcgat 22889662
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 1e-08 Identities = 92/111 (82%) Strand = Plus / Minus Query: 515 acctggcagaagacgaatgagttgaaaataattgtattcagcactatatcagcatcagag 574 |||||||||||||| || | |||||| || |||||||| || || |||||||||| || Sbjct: 23147058 acctggcagaagacaaaagtgttgaatatgattgtatttagtacaatatcagcatggtag 23146999 Query: 575 ccttcaagcccaaaaaaggtttttccttgcgtctggagataccacatgaca 625 ||||| |||||||| ||| ||| ||||| || || ||||||||||||||| Sbjct: 23146998 ccttccagcccaaacaagtgtttcccttgagtttgtagataccacatgaca 23146948 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 5407304 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 5407245 Query: 419 accgtgctgctgaggac 435 || ||||||| |||||| Sbjct: 5407244 actgtgctgccgaggac 5407228 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Minus Query: 362 agaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgacc 421 ||||| || ||||| || || ||||| ||||||||||| | |||||||||||||| || Sbjct: 23147400 agaggtgtggtgttagcgaaatcgcccaggaactggactaggatgaactggaagaagatg 23147341 Query: 422 gtgctgctgaggacac 437 |||| | ||||||||| Sbjct: 23147340 gtgccggtgaggacac 23147325 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 agcttgacgacgacggcgat 309 |||||||||||||||||||| Sbjct: 22882671 agcttgacgacgacggcgat 22882690
>dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full insert sequence Length = 3548 Score = 69.9 bits (35), Expect = 1e-08 Identities = 134/167 (80%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 3034 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 2975 Query: 419 accgtgctgctgaggacacacatgaagacatagttgttcagaatgcccttgagcacattg 478 || ||||||| |||||| | ||| || | ||||| |||||||| | | ||||| Sbjct: 2974 actgtgctgccgaggacggcgacgaacacgttgttgtctagaatgccttcaaatacattt 2915 Query: 479 agcttctccatctccctcgaacttatctcattgaacacctggcagaa 525 | | ||||||||||||| || || | ||||||||||||||||||||| Sbjct: 2914 atcctctccatctcccttgagctcacctcattgaacacctggcagaa 2868
>dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M18, full insert sequence Length = 3726 Score = 69.9 bits (35), Expect = 1e-08 Identities = 134/167 (80%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 3352 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 3293 Query: 419 accgtgctgctgaggacacacatgaagacatagttgttcagaatgcccttgagcacattg 478 || ||||||| |||||| | ||| || | ||||| |||||||| | | ||||| Sbjct: 3292 actgtgctgccgaggacggcgacgaacacgttgttgtctagaatgccttcaaatacattt 3233 Query: 479 agcttctccatctccctcgaacttatctcattgaacacctggcagaa 525 | | ||||||||||||| || || | ||||||||||||||||||||| Sbjct: 3232 atcctctccatctcccttgagctcacctcattgaacacctggcagaa 3186
>ref|NM_102542.1| Arabidopsis thaliana ACA1; calmodulin binding AT1G27770 (ACA1) transcript variant AT1G27770.2 mRNA, complete cds Length = 3262 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 2771 tccatttccctcgagcttatctcattgaatacctggcagaagacaaaaatgttgaaaata 2712 Query: 545 a 545 | Sbjct: 2711 a 2711
>ref|NM_179385.1| Arabidopsis thaliana ACA1; calcium-transporting ATPase/ calmodulin binding AT1G27770 (ACA1) transcript variant AT1G27770.1 mRNA, complete cds Length = 3484 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 2993 tccatttccctcgagcttatctcattgaatacctggcagaagacaaaaatgttgaaaata 2934 Query: 545 a 545 | Sbjct: 2933 a 2933
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 114257 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 114198 Query: 419 accgtgctgctgaggac 435 || ||||||| |||||| Sbjct: 114197 actgtgctgccgaggac 114181
>emb|X69941.1|CHATACA1B A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase Length = 3262 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 2771 tccatttccctcgagcttatctcattgaatacctggcagaagacaaaaatgttgaaaata 2712 Query: 545 a 545 | Sbjct: 2711 a 2711
>gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence Length = 145290 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 4683 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 4624 Query: 419 accgtgctgctgaggac 435 || ||||||| |||||| Sbjct: 4623 actgtgctgccgaggac 4607
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 359 gtgagaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacg 418 |||||||| ||||||||||| || || || |||||||| || || ||||||||||||| | Sbjct: 137903 gtgagaggagtcgtgttggcgaaatcacccaggaactgtactattatgaactggaagatg 137844 Query: 419 accgtgctgctgaggac 435 || ||||||| |||||| Sbjct: 137843 actgtgctgccgaggac 137827
>gb|AF195028.1|AF195028 Glycine max plasma membrane Ca2+-ATPase (SCA1) mRNA, complete cds Length = 3496 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 501 ttatctcattgaacacctggcagaagacgaatgagttgaaaataa 545 ||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 2937 ttatctcattgaaaacctgacagaagacaaatgagttgaaaataa 2893
>dbj|D13983.1|ATHRCECAA Arabidopsis thaliana mRNA for chloroplast envelope Ca2+-ATPase, complete cds Length = 3262 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 2771 tccatttccctcgagcttatctcattgaatacctggcagaagacaaaaatgttgaaaata 2712 Query: 545 a 545 | Sbjct: 2711 a 2711
>gb|L08468.1|ATHARAB1TH Arabidopsis thaliana envelope Ca2+-ATPase (PEA1) mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 3484 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 2993 tccatttccctcgagcttatctcattgaatacctggcagaagacaaaaatgttgaaaata 2934 Query: 545 a 545 | Sbjct: 2933 a 2933
>emb|AJ310840.1|HVU310840 Hordeum vulgare partial CA1 gene for P-type ATPase Length = 1686 Score = 63.9 bits (32), Expect = 6e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 362 agaggcgtcgtgttggcaaactcgccgaggaactggaccatgatgaactggaagacgacc 421 ||||| || ||||| || || ||||| |||||||| || ||||||| |||||| | |||| Sbjct: 1592 agaggagtggtgtttgcgaaatcgccaaggaactgtactatgatgatctggaatatgacc 1533 Query: 422 gtgctgctgaggacacacatgaagacatagttgttcagaatgcccttgagcacattgagc 481 ||||||| ||| ||| | ||| || | |||||| |||||||| |||| ||||| | | Sbjct: 1532 gtgctgccgagcacagcgacgaacacgttgttgtttagaatgcctttgaatacatttatc 1473 Query: 482 ttctccatctccctcgaacttatctcattgaacacctggcagaa 525 |||||||||| || || || | ||| ||||||||||||||||| Sbjct: 1472 ctctccatctctctggagctcacctcgttgaacacctggcagaa 1429
>ref|NM_129719.2| Arabidopsis thaliana ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4); calcium-transporting ATPase/ calmodulin binding AT2G41560 (ACA4) mRNA, complete cds Length = 3284 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 503 atctcattgaacacctggcagaagacgaatgagttgaa 540 |||||||||||||||||||| |||||||| |||||||| Sbjct: 2820 atctcattgaacacctggcaaaagacgaaggagttgaa 2783
>gb|AF200739.1|AF200739 Arabidopsis thaliana plasma membrane-type calcium ATPase isoform 4 (ACA4) mRNA, complete cds Length = 3116 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 503 atctcattgaacacctggcagaagacgaatgagttgaa 540 |||||||||||||||||||| |||||||| |||||||| Sbjct: 2818 atctcattgaacacctggcaaaagacgaaggagttgaa 2781
>ref|NM_115593.2| Arabidopsis thaliana calcium-transporting ATPase/ calmodulin binding AT3G57330 mRNA, complete cds Length = 3256 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 506 tcattgaacacctggcagaagacgaatgagttgaaaataattgt 549 ||||| ||||||||||| |||||||| |||||||| |||||||| Sbjct: 2789 tcattaaacacctggcaaaagacgaaagagttgaagataattgt 2746
>gb|AY147012.1| Medicago truncatula type IIB calcium ATPase (MCA6) mRNA, partial cds Length = 1934 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 497 gaacttatctcattgaacacctggcagaagacgaatgagttgaaaataattgtattca 554 ||||| ||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| Sbjct: 1386 gaactgatctcattgaaaacctgacagaatacaaatgaattgaaaatgagtgtattca 1329
>ref|NM_119927.2| Arabidopsis thaliana ACA2 (CALCIUM ATPASE 2); calmodulin binding AT4G37640 (ACA2) mRNA, complete cds Length = 3426 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||| | ||| |||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 2970 tccatctctcgcgagcttatctcgttaaacacctgacagaagacgaagcagttgaagata 2911 Query: 545 a 545 | Sbjct: 2910 a 2910
>gb|BT010592.1| Arabidopsis thaliana At4g37640 gene, complete cds Length = 3045 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||| | ||| |||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 2837 tccatctctcgcgagcttatctcgttaaacacctgacagaagacgaagcagttgaagata 2778 Query: 545 a 545 | Sbjct: 2777 a 2777
>gb|AY062484.1| Arabidopsis thaliana plasma membrane-type calcium ATPase (ACA2) (At4g37640; F19F18.130) mRNA, complete cds Length = 3426 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||| | ||| |||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 2970 tccatctctcgcgagcttatctcgttaaacacctgacagaagacgaagcagttgaagata 2911 Query: 545 a 545 | Sbjct: 2910 a 2910
>dbj|AK221905.1| Arabidopsis thaliana mRNA for plasma membrane-type calcium ATPase, complete cds, clone: RAFL22-34-C05 Length = 1638 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||| | ||| |||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 1183 tccatctctcgcgagcttatctcgttaaacacctgacagaagacgaagcagttgaagata 1124 Query: 545 a 545 | Sbjct: 1123 a 1123
>emb|BX827273.1|CNS0A4B8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3218 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||| | ||| |||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 2954 tccatctctcgcgagcttatctcgttaaacacctgacagaagacgaagcagttgaagata 2895 Query: 545 a 545 | Sbjct: 2894 a 2894
>gb|AF025842.1|AF025842 Arabidopsis thaliana plasma membrane-type calcium ATPase (ACA2) mRNA, complete cds Length = 3339 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||| | ||| |||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 2917 tccatctctcgcgagcttatctcgttaaacacctgacagaagacgaagcagttgaagata 2858 Query: 545 a 545 | Sbjct: 2857 a 2857
>emb|X69940.1|CHATACA1A A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase Length = 4667 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctg 519 ||||| |||||||| |||||||||||||| ||||| Sbjct: 4026 tccatttccctcgagcttatctcattgaatacctg 3992
>gb|AC079280.4|AC079280 Arabidopsis thaliana chromosome 1 BAC F28L5 genomic sequence, complete sequence Length = 48404 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 485 tccatctccctcgaacttatctcattgaacacctg 519 ||||| |||||||| |||||||||||||| ||||| Sbjct: 1184 tccatttccctcgagcttatctcattgaatacctg 1218
>gb|AC012375.3|AC012375 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence Length = 106753 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 485 tccatctccctcgaacttatctcattgaacacctg 519 ||||| |||||||| |||||||||||||| ||||| Sbjct: 84112 tccatttccctcgagcttatctcattgaatacctg 84146
>dbj|D13984.1|ATHDCECAA Arabidopsis thaliana ACA1 gene for chloroplast envelope Ca2+-ATPase, complete cds Length = 4667 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctg 519 ||||| |||||||| |||||||||||||| ||||| Sbjct: 4026 tccatttccctcgagcttatctcattgaatacctg 3992
>gb|L08469.1|ATHARAB2TH Arabidopsis thaliana envelope Ca2+-ATPase (PEA1) gene, chloroplast gene encoding chloroplast protein, complete cds Length = 4888 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctg 519 ||||| |||||||| |||||||||||||| ||||| Sbjct: 4247 tccatttccctcgagcttatctcattgaatacctg 4213
>ref|NM_127860.1| Arabidopsis thaliana calcium-transporting ATPase/ calmodulin binding AT2G22950 mRNA, complete cds Length = 3048 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 485 tccatctccctcgaacttatctcattgaacacctggcagaagacgaatgagttgaaaata 544 |||||||||| ||| |||| |||||||| ||||||||||| || || ||||||| ||| Sbjct: 2840 tccatctcccgcgagcttacttcattgaaaacctggcagaatacaaagcagttgaagata 2781 Query: 545 attgtattca 554 | ||| |||| Sbjct: 2780 agtgtgttca 2771
>ref|XM_950997.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PROTEIN 6 (NCU08769.1) partial mRNA Length = 282 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 317 ccgacgaggccaaggagcacgc 338 |||||||||||||||||||||| Sbjct: 233 ccgacgaggccaaggagcacgc 254
>ref|XM_330885.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PROTEIN 6 (NCU08769.1) partial mRNA Length = 282 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 317 ccgacgaggccaaggagcacgc 338 |||||||||||||||||||||| Sbjct: 233 ccgacgaggccaaggagcacgc 254
>emb|BX284753.1|NCB2G14 Neurospora crassa DNA linkage group II BAC clone B2G14 Length = 53957 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 ccgacgaggccaaggagcacgc 338 |||||||||||||||||||||| Sbjct: 33700 ccgacgaggccaaggagcacgc 33679
>gb|L26036.1|NEUCON6X Neurospora crassa conidiation protein (con-6) gene exons 1-2, complete cds Length = 1824 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 317 ccgacgaggccaaggagcacgc 338 |||||||||||||||||||||| Sbjct: 1516 ccgacgaggccaaggagcacgc 1537
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 gcaaactcgccgaggaactgg 397 ||||||||||||||||||||| Sbjct: 1204667 gcaaactcgccgaggaactgg 1204647
>gb|AY103493.1| Medicago truncatula type IIB calcium ATPase MCA5 (MCA5) mRNA, complete cds Length = 3487 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 501 ttatctcattgaacacctggcagaa 525 ||||||||||||| ||||||||||| Sbjct: 2957 ttatctcattgaaaacctggcagaa 2933
>gb|AC091531.9| Mus musculus Strain C57BL6/J Chromosome 9 RP23-283E4, complete sequence Length = 178084 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 ttgaaaataattgtattcagc 556 ||||||||||||||||||||| Sbjct: 140662 ttgaaaataattgtattcagc 140642
>emb|BX830450.1|CNS0A25Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB82ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1733 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 gctcttctcaggcttgctctc 168 ||||||||||||||||||||| Sbjct: 1402 gctcttctcaggcttgctctc 1422
>gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosome 9, complete sequence Length = 174016 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 ttgaaaataattgtattcagc 556 ||||||||||||||||||||| Sbjct: 22639 ttgaaaataattgtattcagc 22619
>emb|X99972.1|BOCAATPAS B.oleracea BCA1 mRNA for Ca2+-ATPase Length = 3314 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 512 aacacctggcagaagacgaatgagttgaa 540 ||||||||||| |||||||| |||||||| Sbjct: 2884 aacacctggcaaaagacgaaggagttgaa 2856
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 473 acattgagcttctccatctccctcgaacttatctcattgaacacctgg 520 ||||||| ||| ||||||||||| || |||| |||||||| |||||| Sbjct: 94803 acattgatcttttccatctccctacaatttatttcattgaaaacctgg 94756
>gb|AC159879.2| Mus musculus BAC clone RP24-497H22 from chromosome 12, complete sequence Length = 201836 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 tgctgaggacacacatgaag 445 |||||||||||||||||||| Sbjct: 31261 tgctgaggacacacatgaag 31242
>emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chromosome 16, complete sequence Length = 230233 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 agttgaaaataattgtattc 553 |||||||||||||||||||| Sbjct: 108253 agttgaaaataattgtattc 108234
>emb|AL512587.13| Mouse DNA sequence from clone RP23-467P7 on chromosome 2, complete sequence Length = 180204 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 cacattgagcttctccatct 491 |||||||||||||||||||| Sbjct: 141588 cacattgagcttctccatct 141607
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 agcttgacgacgacggcgat 309 |||||||||||||||||||| Sbjct: 92173 agcttgacgacgacggcgat 92192
>gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, complete sequence Length = 202195 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 agttgaaaataattgtattc 553 |||||||||||||||||||| Sbjct: 108446 agttgaaaataattgtattc 108465
>gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome 12, complete sequence Length = 247201 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 tgctgaggacacacatgaag 445 |||||||||||||||||||| Sbjct: 221063 tgctgaggacacacatgaag 221044
>gb|BC090742.1| Danio rerio im:6893299, mRNA (cDNA clone IMAGE:6909257), partial cds Length = 2145 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 aagcccaaaaaaggtttttc 599 |||||||||||||||||||| Sbjct: 372 aagcccaaaaaaggtttttc 391
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 aactcgccgaggaactggac 399 |||||||||||||||||||| Sbjct: 1276578 aactcgccgaggaactggac 1276559
>emb|AL645615.14| Mouse DNA sequence from clone RP23-395B22 on chromosome 11 Contains the Ddx52 gene for DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, the Ap1gbp1 gene for AP1 gamma subunit binding protein 1, the Dusp14 gene for dual specificity phosphatase 14 and the Tada2l gene for transcriptional adaptor 2 (ADA2 homolog, yeast)-like, complete sequence Length = 196812 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 450 agttgttcagaatgcccttgagcacatt 477 |||||||||| |||||||||||| |||| Sbjct: 132162 agttgttcaggatgcccttgagctcatt 132189
>gb|AF466149.1| Medicago truncatula type IIB calcium ATPase (MCA3) mRNA, complete cds Length = 3653 Score = 40.1 bits (20), Expect = 8.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 501 ttatctcattgaacacctggcagaagacgaatgagttgaa 540 |||||||||| ||||||||||| || || || |||||||| Sbjct: 3056 ttatctcattaaacacctggcaaaatacaaaggagttgaa 3017
>ref|XM_702487.1| PREDICTED: Danio rerio similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120), transcript variant 5 (LOC561261), mRNA Length = 2725 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 aagcccaaaaaaggtttttc 599 |||||||||||||||||||| Sbjct: 368 aagcccaaaaaaggtttttc 387
>ref|XM_702486.1| PREDICTED: Danio rerio similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120), transcript variant 4 (LOC561261), mRNA Length = 2701 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 aagcccaaaaaaggtttttc 599 |||||||||||||||||||| Sbjct: 368 aagcccaaaaaaggtttttc 387
>ref|XM_702485.1| PREDICTED: Danio rerio similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120), transcript variant 3 (LOC561261), mRNA Length = 2728 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 aagcccaaaaaaggtttttc 599 |||||||||||||||||||| Sbjct: 368 aagcccaaaaaaggtttttc 387
>ref|XM_702484.1| PREDICTED: Danio rerio similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120), transcript variant 2 (LOC561261), mRNA Length = 2746 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 aagcccaaaaaaggtttttc 599 |||||||||||||||||||| Sbjct: 368 aagcccaaaaaaggtttttc 387
>ref|XM_679556.1| PREDICTED: Danio rerio similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120), transcript variant 1 (LOC561261), mRNA Length = 2740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 aagcccaaaaaaggtttttc 599 |||||||||||||||||||| Sbjct: 368 aagcccaaaaaaggtttttc 387
>gb|AY059632.1| Medicago truncatula type IIB calcium ATPase (MCA1) mRNA, complete cds Length = 3535 Score = 40.1 bits (20), Expect = 8.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 501 ttatctcattgaacacctggcagaagacgaatgagttgaa 540 ||||||||||||| |||||||| || || || |||||||| Sbjct: 2984 ttatctcattgaatacctggcaaaatacaaaggagttgaa 2945
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 gacgacgacggcgatcggca 314 |||||||||||||||||||| Sbjct: 27793 gacgacgacggcgatcggca 27774
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 473 acattgagcttctccatctccctcgaacttatctcattgaacacctgg 520 ||||||| ||| ||||||||||| || |||| |||||||| |||||| Sbjct: 24208565 acattgatcttttccatctccctacaatttatttcattgaaaacctgg 24208518
>emb|AL391261.3|CNS06C85 Human chromosome 14 DNA sequence BAC C-2014B16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162144 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tgcccttttcatcaggagga 276 |||||||||||||||||||| Sbjct: 69463 tgcccttttcatcaggagga 69444 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,482,697 Number of Sequences: 3902068 Number of extensions: 5482697 Number of successful extensions: 107184 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106556 Number of HSP's gapped (non-prelim): 627 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)