ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TFP11_HUMAN (Q9UBB9) Tuftelin-interacting protein 11 65 1e-10
2TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-i... 65 1e-10
3FINC_BOVIN (P07589) Fibronectin (FN) 31 3.1
4CYB_MANME (Q9TAB1) Cytochrome b 29 8.9

>TFP11_HUMAN (Q9UBB9) Tuftelin-interacting protein 11|
          Length = 837

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
 Frame = -1

Query: 489  QPGARENVGFLRATEKR---QFDAAQQA--SQYPSYHAVPGAAMS-EMSFKESIQAYAGD 328
            QPGAREN+ +L  TE+R   Q++A Q+   ++  +   +  AA S  M+FK+ I+  A +
Sbjct: 724  QPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETKAEE 783

Query: 327  QGLLFMPRVNKFYKGMQVYEFGTVSICIDSVKRLLYAQLQEGAERWSSVSLTQLLEM 157
              ++FMP + K ++G Q+Y FG + I ID  + +++ Q   G + W   SL  L++M
Sbjct: 784  HNIVFMPVIGKRHEGKQLYTFGRIVIYID--RGVVFVQ---GEKTWVPTSLQSLIDM 835



to top

>TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-interacting|
            protein 39)
          Length = 838

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
 Frame = -1

Query: 489  QPGARENVGFLRATEKR---QFDAAQQA--SQYPSYHAVPGAAMS-EMSFKESIQAYAGD 328
            QPGAREN+ +L  TE+R   Q++A Q+   ++  +   +  AA S  M+FK+ I+  A +
Sbjct: 725  QPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETKAEE 784

Query: 327  QGLLFMPRVNKFYKGMQVYEFGTVSICIDSVKRLLYAQLQEGAERWSSVSLTQLLEM 157
              ++FMP + K ++G Q+Y FG + I ID  + +++ Q   G + W   SL  L++M
Sbjct: 785  HNIVFMPVIGKRHEGKQLYTFGRIVIYID--RGVVFVQ---GEKTWVPTSLQSLIDM 836



to top

>FINC_BOVIN (P07589) Fibronectin (FN)|
          Length = 2265

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -1

Query: 483  GARENVGFLRATEKRQFDAAQQASQYPSYHAVPGAAMSEMSFKESIQAYAGDQGLLFMPR 304
            G R  VG  R  + +Q++    ASQYP  +  PG+      +  S+ A  G+Q     PR
Sbjct: 995  GYRLTVGLTRGGQPKQYNVGPAASQYPLRNLQPGS-----EYAVSLVAVKGNQQ---SPR 1046

Query: 303  VNKFYKGMQ 277
            V   +  +Q
Sbjct: 1047 VTGVFTTLQ 1055



to top

>CYB_MANME (Q9TAB1) Cytochrome b|
          Length = 380

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 402 MGIAMLAVLHQIAASLLLSRSQHSP*-PLAVPTHVLQQLWFIISRPAVRSI 551
           M IA+LA L   + +LL      +P  PLA P H+  + +F+ +   +RSI
Sbjct: 235 MMIALLAALALFSPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSI 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,708,166
Number of Sequences: 219361
Number of extensions: 1557176
Number of successful extensions: 4855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4853
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top