ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S ... 38 6.4
2ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) ... 38 6.4
3emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 i... 38 6.4

>gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5, mRNA
           (cDNA clone MGC:111955 IMAGE:7248997), complete cds
          Length = 541

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 89  tggacaagtggntgctggctca 110
           ||||||||||| ||||||||||
Sbjct: 110 tggacaagtggctgctggctca 131



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>ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5
           (ndufs5), mRNA
          Length = 541

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 89  tggacaagtggntgctggctca 110
           ||||||||||| ||||||||||
Sbjct: 110 tggacaagtggctgctggctca 131



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>emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 in linkage group 19,
             complete sequence
          Length = 118451

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 89    tggacaagtggntgctggctca 110
             ||||||||||| ||||||||||
Sbjct: 57921 tggacaagtggctgctggctca 57900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 459,359
Number of Sequences: 3902068
Number of extensions: 459359
Number of successful extensions: 27868
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27865
Number of HSP's gapped (non-prelim): 3
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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