ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3g14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 Score = 99.6 bits (50), Expect = 1e-17 Identities = 149/182 (81%) Strand = Plus / Minus Query: 263 aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322 |||||||||||| || | || || |||||||||| ||||| ||||||||| ||| | Sbjct: 134945 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 134886 Query: 323 gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382 | |||| | ||| |||| |||||||||||||||| |||| |||| ||||||||||| Sbjct: 134885 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 134826 Query: 383 agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442 ||| || ||||| ||||| || || |||||||||||||| || ||||||||||||||||| Sbjct: 134825 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 134766 Query: 443 gt 444 || Sbjct: 134765 gt 134764 Score = 91.7 bits (46), Expect = 3e-15 Identities = 92/106 (86%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 586 ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642 ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | Sbjct: 134628 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 134572 Query: 643 tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688 ||||| |||||||||||||||||||||| | |||||||| ||||| Sbjct: 134571 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 134526
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 99.6 bits (50), Expect = 1e-17 Identities = 149/182 (81%) Strand = Plus / Minus Query: 263 aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322 |||||||||||| || | || || |||||||||| ||||| ||||||||| ||| | Sbjct: 9886 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 9827 Query: 323 gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382 | |||| | ||| |||| |||||||||||||||| |||| |||| ||||||||||| Sbjct: 9826 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 9767 Query: 383 agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442 ||| || ||||| ||||| || || |||||||||||||| || ||||||||||||||||| Sbjct: 9766 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 9707 Query: 443 gt 444 || Sbjct: 9706 gt 9705 Score = 91.7 bits (46), Expect = 3e-15 Identities = 92/106 (86%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 586 ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642 ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | Sbjct: 9569 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 9513 Query: 643 tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688 ||||| |||||||||||||||||||||| | |||||||| ||||| Sbjct: 9512 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 9467
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 99.6 bits (50), Expect = 1e-17 Identities = 149/182 (81%) Strand = Plus / Minus Query: 263 aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322 |||||||||||| || | || || |||||||||| ||||| ||||||||| ||| | Sbjct: 11565451 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 11565392 Query: 323 gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382 | |||| | ||| |||| |||||||||||||||| |||| |||| ||||||||||| Sbjct: 11565391 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 11565332 Query: 383 agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442 ||| || ||||| ||||| || || |||||||||||||| || ||||||||||||||||| Sbjct: 11565331 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 11565272 Query: 443 gt 444 || Sbjct: 11565271 gt 11565270 Score = 91.7 bits (46), Expect = 3e-15 Identities = 92/106 (86%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 586 ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642 ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | Sbjct: 11565134 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 11565078 Query: 643 tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688 ||||| |||||||||||||||||||||| | |||||||| ||||| Sbjct: 11565077 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 11565032
>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full insert sequence Length = 3311 Score = 99.6 bits (50), Expect = 1e-17 Identities = 149/182 (81%) Strand = Plus / Minus Query: 263 aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322 |||||||||||| || | || || |||||||||| ||||| ||||||||| ||| | Sbjct: 2750 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 2691 Query: 323 gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382 | |||| | ||| |||| |||||||||||||||| |||| |||| ||||||||||| Sbjct: 2690 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 2631 Query: 383 agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442 ||| || ||||| ||||| || || |||||||||||||| || ||||||||||||||||| Sbjct: 2630 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 2571 Query: 443 gt 444 || Sbjct: 2570 gt 2569 Score = 91.7 bits (46), Expect = 3e-15 Identities = 92/106 (86%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 586 ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642 ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | Sbjct: 2433 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 2377 Query: 643 tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688 ||||| |||||||||||||||||||||| | |||||||| ||||| Sbjct: 2376 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 2331
>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full insert sequence Length = 3137 Score = 99.6 bits (50), Expect = 1e-17 Identities = 149/182 (81%) Strand = Plus / Minus Query: 263 aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322 |||||||||||| || | || || |||||||||| ||||| ||||||||| ||| | Sbjct: 2702 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 2643 Query: 323 gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382 | |||| | ||| |||| |||||||||||||||| |||| |||| ||||||||||| Sbjct: 2642 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 2583 Query: 383 agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442 ||| || ||||| ||||| || || |||||||||||||| || ||||||||||||||||| Sbjct: 2582 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 2523 Query: 443 gt 444 || Sbjct: 2522 gt 2521 Score = 91.7 bits (46), Expect = 3e-15 Identities = 92/106 (86%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 586 ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642 ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | Sbjct: 2385 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 2329 Query: 643 tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688 ||||| |||||||||||||||||||||| | |||||||| ||||| Sbjct: 2328 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 2283
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 tcaatggatcaaattacgtctgcacaaaat 237 |||||||| |||||||| |||||||||||| Sbjct: 1189518 tcaatggaacaaattacttctgcacaaaat 1189547
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 tcaatggatcaaattacgtctgcacaaaat 237 |||||||| |||||||| |||||||||||| Sbjct: 1154421 tcaatggaacaaattacttctgcacaaaat 1154450
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 tcaatggatcaaattacgtctgcacaaaat 237 |||||||| |||||||| |||||||||||| Sbjct: 1050759 tcaatggaacaaattacttctgcacaaaat 1050788
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 tcaatggatcaaattacgtctgcacaaaat 237 |||||||| |||||||| |||||||||||| Sbjct: 1130883 tcaatggaacaaattacttctgcacaaaat 1130912
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 tcaatggatcaaattacgtctgcacaaaat 237 |||||||| |||||||| |||||||||||| Sbjct: 1113190 tcaatggaacaaattacttctgcacaaaat 1113219
>gb|AC123924.4| Mus musculus BAC clone RP24-292A3 from chromosome 16, complete sequence Length = 159639 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 tgatgctatttcttttcattgctgg 261 |||||||||| |||||||||||||| Sbjct: 106741 tgatgctattgcttttcattgctgg 106765 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,239,079 Number of Sequences: 3902068 Number of extensions: 6239079 Number of successful extensions: 116870 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116725 Number of HSP's gapped (non-prelim): 135 length of query: 746 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 723 effective length of database: 17,143,297,704 effective search space: 12394604239992 effective search space used: 12394604239992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
