ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3g04 |
|---|---|
| Clone Library Name | barley_pub |
>ODFP_MOUSE (Q61999) Outer dense fiber protein| Length = 247 Score = 32.7 bits (73), Expect = 1.0 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Frame = +2 Query: 230 YSFGDSCKPANPMSPLPPAGRSSAGHLQGCGSCWGVAGESGAMVKCTP-LPC 382 Y C P NP SP P + G CG C G G C P PC Sbjct: 189 YPCTSPCNPCNPCSPCSPCAPCACGPCGPCGPC----GPCGPCDPCNPCYPC 236
>ODFP_RAT (P21769) Outer dense fiber protein (Protein RT7) (RTS 5/1)| Length = 245 Score = 31.2 bits (69), Expect = 3.0 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Frame = +2 Query: 230 YSFGDSCKPANPMSPLPPAGRSSAGHLQGCGSCWGVAGESGAMVKCTP-LPC 382 Y C P NP SP P G CG C G G G C P PC Sbjct: 189 YPCTSPCNPCNPCSPCSPCGPCGP-----CGPC-GPCGPCGPCDPCNPCYPC 234
>LET12_LYCES (O22300) Homeobox protein knotted-1-like LET12| Length = 426 Score = 30.4 bits (67), Expect = 5.1 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 194 TWLCTGTLAANHYSFGDSCKPANPMSPLPPAGRSSAGHLQGCGS 325 TWL T L H FG++ P++ + AG ++ HLQ S Sbjct: 46 TWLNTSLLRQQHSQFGNASSPSSAAAAAAVAGGNNFLHLQTSNS 89
>KAZD1_MOUSE (Q8BJ66) Kazal-type serine protease inhibitor domain-containing| protein 1 precursor (IGFBP-related protein 10) (IGFBP-rP10) (Bone and odontoblast expressed protein 1) Length = 313 Score = 30.4 bits (67), Expect = 5.1 Identities = 13/45 (28%), Positives = 16/45 (35%) Frame = +2 Query: 239 GDSCKPANPMSPLPPAGRSSAGHLQGCGSCWGVAGESGAMVKCTP 373 G+ C P P P G + CG CW A G + P Sbjct: 57 GEGCAPCRPKKCAAPRGCLAGRVRDACGCCWECANLEGQLCDLDP 101
>KAZD1_HUMAN (Q96I82) Kazal-type serine protease inhibitor domain-containing| protein 1 precursor Length = 304 Score = 30.0 bits (66), Expect = 6.6 Identities = 13/45 (28%), Positives = 16/45 (35%) Frame = +2 Query: 239 GDSCKPANPMSPLPPAGRSSAGHLQGCGSCWGVAGESGAMVKCTP 373 G+ C P P P G + CG CW A G + P Sbjct: 50 GEGCAPCRPEECAAPRGCLAGRVRDACGCCWECANLEGQLCDLDP 94
>VP24_MABVP (P41325) Membrane-associated structural protein VP24 (VP6)| Length = 253 Score = 30.0 bits (66), Expect = 6.6 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = -3 Query: 257 LACMNHQRSNGLLPECQCRAMLFTYFTSLP*V*RSETCPSLCFRILLGLAL 105 +A ++H +SN ++PE Q LF++ P E P L RILLG+AL Sbjct: 54 MALLHHLKSNFVVPEWQQTRNLFSHLFKNPKSTIIE--PFLALRILLGVAL 102
>VIF_HV1LW (Q70623) Virion infectivity factor (SOR protein)| Length = 132 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 +V G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YVSGKARG-WFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>VIF_HV1Y2 (P35964) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 ++ G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YISGKARG-WFYRHHYESPHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>VIF_HV1PV (P69724) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 +V G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YVSGKARG-WFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>VIF_HV1H2 (P69723) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 +V G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YVSGKARG-WFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>VIF_HV1BR (P69721) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 +V G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YVSGKARG-WFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>VIF_HV1B1 (P69720) Virion infectivity factor (SOR protein)| Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 +V G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YVSGKARG-WFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>VIF_HV112 (P69722) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +1 Query: 322 FVLGRGRRIWCYGEMHSSPLPRLEDECHLSCCQRSCLLPMSATLQYTNCPSHY-----IE 486 +V G+ R W Y + SP PR+ E H+ ++ L H IE Sbjct: 30 YVSGKARG-WFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIE 88 Query: 487 WEKKTSSTQ 513 W KK STQ Sbjct: 89 WRKKRYSTQ 97
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 25.8 bits (55), Expect(2) = 9.5 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +2 Query: 248 CKPANPMSPLPPAGRSSAGHLQGCGSCWGVAGESGAMVKCTPLPC 382 CKP +P SS G +GCGSC G G G+ C+ C Sbjct: 42 CKPV--CCCVPACSCSSCGK-RGCGSCGGSKGGCGS-CGCSQCSC 82 Score = 22.3 bits (46), Expect(2) = 9.5 Identities = 8/13 (61%), Positives = 8/13 (61%) Frame = +1 Query: 400 CHLSCCQRSCLLP 438 C SCCQ SC P Sbjct: 92 CGSSCCQCSCCKP 104 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,951,050 Number of Sequences: 219361 Number of extensions: 1982492 Number of successful extensions: 6499 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6475 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
