ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016226.1| Zea mays clone Contig59 mRNA sequence 371 2e-99
2gb|AY105562.1| Zea mays PCO069731 mRNA sequence 371 2e-99
3ref|XM_467481.1| Oryza sativa (japonica cultivar-group), mRNA 369 8e-99
4dbj|AK065836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 369 8e-99
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 309 6e-81
6dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 309 6e-81
7dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 309 6e-81
8gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 2.3
9ref|NM_103298.1| Arabidopsis thaliana unknown protein AT1G36030 ... 40 9.1
10ref|NM_179912.1| Arabidopsis thaliana unknown protein AT2G35280 ... 40 9.1
11ref|NM_113943.1| Arabidopsis thaliana unknown protein AT3G30430 ... 40 9.1
12gb|BT015535.1| Arabidopsis thaliana At3g30430 mRNA sequence 40 9.1
13gb|AY196994.1| Streptomyces griseoruber heda cluster, complete s... 40 9.1
14gb|AC142405.4| Mus musculus BAC clone RP24-559P3 from chromosome... 40 9.1
15gb|BT011798.1| Arabidopsis thaliana At1g36030 mRNA sequence 40 9.1
16gb|AC149067.3| Mus musculus BAC clone RP23-56C20 from chromosome... 40 9.1
17gb|DQ446599.1| Arabidopsis thaliana clone pENTR221-At2g35280 F-b... 40 9.1
18gb|AC144710.2| Danio rerio clone CH211-215E4, complete sequence 40 9.1
19emb|AL033538.1|HS477H23 Human DNA sequence from clone RP3-477H23... 40 9.1
20emb|CR925744.7| Zebrafish DNA sequence from clone RP71-37A9 in l... 40 9.1
21emb|AJ938012.1| Aeromonas caviae transposon Tn903-interrupted se... 40 9.1
22emb|BX927244.11| Zebrafish DNA sequence from clone CH211-116O3 i... 40 9.1
23emb|CR394525.8| Zebrafish DNA sequence from clone DKEY-24N17 in ... 40 9.1
24gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 40 9.1
25gb|AC026811.5| Homo sapiens chromosome 5 clone RP3_474K3, comple... 40 9.1
26gb|AC091387.2| Drosophila melanogaster, chromosome 2R, region 50... 40 9.1
27emb|BX664738.14| Zebrafish DNA sequence from clone DKEY-240A9 in... 40 9.1
28gb|AC007329.7|AC007329 Drosophila melanogaster, chromosome 2R, r... 40 9.1
29gb|AC021666.5|AC021666 Arabidopsis thaliana chromosome 1 BAC T22... 40 9.1
30gb|AC079282.1|AC079282 Arabidopsis thaliana chromosome 1 BAC F7F... 40 9.1
31gb|AC078806.18| Homo sapiens 3 BAC RP11-59B20 (Roswell Park Canc... 40 9.1
32dbj|AP000389.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.1
33dbj|AP002064.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.1
34emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.1
35gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_1... 40 9.1
36emb|CR848009.9| Zebrafish DNA sequence from clone CH211-210O21 i... 40 9.1
37gb|AE003817.3| Drosophila melanogaster chromosome 2R, section 33... 40 9.1
38dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.1
39gb|AC118926.13| Mus musculus chromosome 5, clone RP23-323D23, co... 40 9.1
40dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.1
41gb|AC110885.14| Mus musculus chromosome 7, clone RP24-342P18, co... 40 9.1 
>gb|BT016226.1| Zea mays clone Contig59 mRNA sequence
          Length = 820

 Score =  371 bits (187), Expect = 2e-99
 Identities = 377/439 (85%), Gaps = 1/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 214 ggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctggtagtatta 273
           |||||||| ||  ||||||| |||| |||| ||||||| ||||| |||||||| ||||| 
Sbjct: 601 ggcttcttctcagttgtgtaggcatagtactctttgccgttgtcaactctggtcgtattg 542

                                                                       
Query: 274 ccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatgagggcagac 333
           || |||| |||||| |  ||||||||||| ||||| |  || || ||||||||||| |||
Sbjct: 541 ccgccaatgtccagcacagcagatgtgaaagccagacaggagcctccgatgagggctgac 482

                                                                       
Query: 334 ttaatgctctttcctctgtagccatagacggtggcgccggagacgaaggcgccgatggcc 393
           | ||| |||||||||||||||||  |||| | ||| ||||  ||||| ||||||| ||||
Sbjct: 481 tgaatactctttcctctgtagccgcagacagaggctccggcaacgaacgcgccgacggcc 422

                                                                       
Query: 394 ccgttgacgaagtcgcgcttcttgcgctggctctgcacaatctgctccaccccgatgtaa 453
           |||||||||||||||||||||||||||||||||||||| | |||||| || |||||||| 
Sbjct: 421 ccgttgacgaagtcgcgcttcttgcgctggctctgcacgagctgctcgacgccgatgtag 362

                                                                       
Query: 454 agtcctccgacggcggcgaaagtgaccccgtagctgccgcacatcttgagcgtccggacg 513
           || || |||| || |||||| ||| |||||||| ||||||||||||||||||||||||  
Sbjct: 361 aggcccccgatggtggcgaaggtggccccgtaggtgccgcacatcttgagcgtccggata 302

                                                                       
Query: 514 aggcccgggagcgccgacgtggcgctccacccggggcacgtcgtaccaggtggcgacgat 573
           ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 301 aggccagggagcg-cgacgtggcgctccacacggggcacgtcgtaccaggtggcgacgac 243

                                                                       
Query: 574 ggtgccccagatggtgcccgcggccagacccgtcgcggcgcccttcaccgtcttcgtggc 633
           ||||||||||||||| |||||||| || || ||| | || ||||||| |||||||||   
Sbjct: 242 ggtgccccagatggtccccgcggcgagtcctgtcaccgcacccttcatcgtcttcgtcag 183

                              
Query: 634 cggcgagtcatcctccatc 652
           |||||||||||||||||||
Sbjct: 182 cggcgagtcatcctccatc 164
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>gb|AY105562.1| Zea mays PCO069731 mRNA sequence
          Length = 1026

 Score =  371 bits (187), Expect = 2e-99
 Identities = 377/439 (85%), Gaps = 1/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 214 ggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctggtagtatta 273
           |||||||| ||  ||||||| |||| |||| ||||||| ||||| |||||||| ||||| 
Sbjct: 766 ggcttcttctcagttgtgtaggcatagtactctttgccgttgtcaactctggtcgtattg 707

                                                                       
Query: 274 ccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatgagggcagac 333
           || |||| |||||| |  ||||||||||| ||||| |  || || ||||||||||| |||
Sbjct: 706 ccgccaatgtccagcacagcagatgtgaaagccagacaggagcctccgatgagggctgac 647

                                                                       
Query: 334 ttaatgctctttcctctgtagccatagacggtggcgccggagacgaaggcgccgatggcc 393
           | ||| |||||||||||||||||  |||| | ||| ||||  ||||| ||||||| ||||
Sbjct: 646 tgaatactctttcctctgtagccgcagacagaggctccggcaacgaacgcgccgacggcc 587

                                                                       
Query: 394 ccgttgacgaagtcgcgcttcttgcgctggctctgcacaatctgctccaccccgatgtaa 453
           |||||||||||||||||||||||||||||||||||||| | |||||| || |||||||| 
Sbjct: 586 ccgttgacgaagtcgcgcttcttgcgctggctctgcacgagctgctcgacgccgatgtag 527

                                                                       
Query: 454 agtcctccgacggcggcgaaagtgaccccgtagctgccgcacatcttgagcgtccggacg 513
           || || |||| || |||||| ||| |||||||| ||||||||||||||||||||||||  
Sbjct: 526 aggcccccgatggtggcgaaggtggccccgtaggtgccgcacatcttgagcgtccggata 467

                                                                       
Query: 514 aggcccgggagcgccgacgtggcgctccacccggggcacgtcgtaccaggtggcgacgat 573
           ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 466 aggccagggagcg-cgacgtggcgctccacacggggcacgtcgtaccaggtggcgacgac 408

                                                                       
Query: 574 ggtgccccagatggtgcccgcggccagacccgtcgcggcgcccttcaccgtcttcgtggc 633
           ||||||||||||||| |||||||| || || ||| | || ||||||| |||||||||   
Sbjct: 407 ggtgccccagatggtccccgcggcgagtcctgtcaccgcacccttcatcgtcttcgtcag 348

                              
Query: 634 cggcgagtcatcctccatc 652
           |||||||||||||||||||
Sbjct: 347 cggcgagtcatcctccatc 329
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>ref|XM_467481.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 994

 Score =  369 bits (186), Expect = 8e-99
 Identities = 473/565 (83%), Gaps = 9/565 (1%)
 Strand = Plus / Minus

                                                                       
Query: 87  tttgcaaaggaactaggtgcatcagcaaaacagacataacagcacacgtcagctcaaaaa 146
           ||||||||||| |||| | ||||| |||||||||||| | || |  | ||||||  ||||
Sbjct: 893 tttgcaaaggagctag-tacatcaacaaaacagacatgaaagtaagcatcagcttcaaaa 835

                                                                       
Query: 147 ttcaccgagctgatggttt-gcatgatttgtgctacaagtacacaaccttggtcaatgcg 205
           ||||||||||||| ||||| ||| || ||| |||||| ||||| ||| |  ||||||| |
Sbjct: 834 ttcaccgagctgacggttttgcaggacttgggctacacgtacagaacttcagtcaatgag 775

                                                                       
Query: 206 caggctcgggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctgg 265
           |      |||||| || || | |||||| | || |||| |||||||||||||||||||||
Sbjct: 774 c------gggcttattctcgactgtgtagggatagtactctttgccattgtccactctgg 721

                                                                       
Query: 266 tagtattaccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatga 325
           |||| || || |||||||||||    |||||||| || ||||||| ||||||| | ||||
Sbjct: 720 tagtgttgccgccaacgtccagcgcagcagatgtaaaagccaggcaagaaccagctatga 661

                                                                       
Query: 326 gggcagacttaatgctctttcctctgtagccatagacggtggcgccggagacgaaggcgc 385
           | |||||    |||||| ||||| |||||||  | | ||||||||||| |||||||||||
Sbjct: 660 gcgcagaagggatgctccttcctttgtagccgaatatggtggcgccggcgacgaaggcgc 601

                                                                       
Query: 386 cgatggccccgttgacgaagtcgcgcttcttgcgctggctctgcacaatctgctccaccc 445
           ||| ||||||||||||| |||||  |||||||||||||||| |||| | |||||| || |
Sbjct: 600 cgacggccccgttgacgtagtcgttcttcttgcgctggctcagcacgagctgctcgacgc 541

                                                                       
Query: 446 cgatgtaaagtcctccgacggcggcgaaagtgaccccgtagctgccgcacatcttgagcg 505
           ||||||| || || |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 540 cgatgtagaggcccccgacggcggcgaacgtggccccgtagctgccgcacatcttgagcg 481

                                                                       
Query: 506 tccggacgaggcccgggagcgccgacgtggcgctccacccggggcacgtcgtaccaggtg 565
           |||||| ||| |||||||||| ||||||||||||| |||||||||||||||| ||| || 
Sbjct: 480 tccggatgagccccgggagcg-cgacgtggcgctcgacccggggcacgtcgtgccatgtc 422

                                                                       
Query: 566 gcgacgatggtgccccagatggtgcccgcggccagacccgtcgcggcgcccttcaccgtc 625
           |||||||  |||||||||||||| ||||||||||| |||||||| ||| |||||||||||
Sbjct: 421 gcgacgaccgtgccccagatggtccccgcggccagccccgtcgccgcggccttcaccgtc 362

                                    
Query: 626 ttcgtggccggcgagtcatcctcca 650
           |||||  |||||| ||| |||||||
Sbjct: 361 ttcgtcaccggcgtgtcctcctcca 337
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>dbj|AK065836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037P14, full
           insert sequence
          Length = 995

 Score =  369 bits (186), Expect = 8e-99
 Identities = 473/565 (83%), Gaps = 9/565 (1%)
 Strand = Plus / Minus

                                                                       
Query: 87  tttgcaaaggaactaggtgcatcagcaaaacagacataacagcacacgtcagctcaaaaa 146
           ||||||||||| |||| | ||||| |||||||||||| | || |  | ||||||  ||||
Sbjct: 893 tttgcaaaggagctag-tacatcaacaaaacagacatgaaagtaagcatcagcttcaaaa 835

                                                                       
Query: 147 ttcaccgagctgatggttt-gcatgatttgtgctacaagtacacaaccttggtcaatgcg 205
           ||||||||||||| ||||| ||| || ||| |||||| ||||| ||| |  ||||||| |
Sbjct: 834 ttcaccgagctgacggttttgcaggacttgggctacacgtacagaacttcagtcaatgag 775

                                                                       
Query: 206 caggctcgggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctgg 265
           |      |||||| || || | |||||| | || |||| |||||||||||||||||||||
Sbjct: 774 c------gggcttattctcgactgtgtagggatagtactctttgccattgtccactctgg 721

                                                                       
Query: 266 tagtattaccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatga 325
           |||| || || |||||||||||    |||||||| || ||||||| ||||||| | ||||
Sbjct: 720 tagtgttgccgccaacgtccagcgcagcagatgtaaaagccaggcaagaaccagctatga 661

                                                                       
Query: 326 gggcagacttaatgctctttcctctgtagccatagacggtggcgccggagacgaaggcgc 385
           | |||||    |||||| ||||| |||||||  | | ||||||||||| |||||||||||
Sbjct: 660 gcgcagaagggatgctccttcctttgtagccgaatatggtggcgccggcgacgaaggcgc 601

                                                                       
Query: 386 cgatggccccgttgacgaagtcgcgcttcttgcgctggctctgcacaatctgctccaccc 445
           ||| ||||||||||||| |||||  |||||||||||||||| |||| | |||||| || |
Sbjct: 600 cgacggccccgttgacgtagtcgttcttcttgcgctggctcagcacgagctgctcgacgc 541

                                                                       
Query: 446 cgatgtaaagtcctccgacggcggcgaaagtgaccccgtagctgccgcacatcttgagcg 505
           ||||||| || || |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 540 cgatgtagaggcccccgacggcggcgaacgtggccccgtagctgccgcacatcttgagcg 481

                                                                       
Query: 506 tccggacgaggcccgggagcgccgacgtggcgctccacccggggcacgtcgtaccaggtg 565
           |||||| ||| |||||||||| ||||||||||||| |||||||||||||||| ||| || 
Sbjct: 480 tccggatgagccccgggagcg-cgacgtggcgctcgacccggggcacgtcgtgccatgtc 422

                                                                       
Query: 566 gcgacgatggtgccccagatggtgcccgcggccagacccgtcgcggcgcccttcaccgtc 625
           |||||||  |||||||||||||| ||||||||||| |||||||| ||| |||||||||||
Sbjct: 421 gcgacgaccgtgccccagatggtccccgcggccagccccgtcgccgcggccttcaccgtc 362

                                    
Query: 626 ttcgtggccggcgagtcatcctcca 650
           |||||  |||||| ||| |||||||
Sbjct: 361 ttcgtcaccggcgtgtcctcctcca 337
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  309 bits (156), Expect = 6e-81
 Identities = 256/288 (88%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                            
Query: 363      ggtggcgccggagacgaaggcgccgatggccccgttgacgaagtcgcgcttcttgcgctg 422
                ||||||||||| |||||||||||||| ||||||||||||| |||||  ||||||||||||
Sbjct: 29775125 ggtggcgccggcgacgaaggcgccgacggccccgttgacgtagtcgttcttcttgcgctg 29775066

                                                                            
Query: 423      gctctgcacaatctgctccaccccgatgtaaagtcctccgacggcggcgaaagtgacccc 482
                |||| |||| | |||||| || |||||||| || || |||||||||||||| ||| ||||
Sbjct: 29775065 gctcagcacgagctgctcgacgccgatgtagaggcccccgacggcggcgaacgtggcccc 29775006

                                                                            
Query: 483      gtagctgccgcacatcttgagcgtccggacgaggcccgggagcgccgacgtggcgctcca 542
                ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
Sbjct: 29775005 gtagctgccgcacatcttgagcgtccggatgagccccgggagcg-cgacgtggcgctcga 29774947

                                                                            
Query: 543      cccggggcacgtcgtaccaggtggcgacgatggtgccccagatggtgcccgcggccagac 602
                ||||||||||||||| ||| || |||||||  |||||||||||||| ||||||||||| |
Sbjct: 29774946 cccggggcacgtcgtgccatgtcgcgacgaccgtgccccagatggtccccgcggccagcc 29774887

                                                                
Query: 603      ccgtcgcggcgcccttcaccgtcttcgtggccggcgagtcatcctcca 650
                ||||||| ||| ||||||||||||||||  |||||| ||| |||||||
Sbjct: 29774886 ccgtcgccgcggccttcaccgtcttcgtcaccggcgtgtcctcctcca 29774839



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 197/247 (79%), Gaps = 8/247 (3%)
 Strand = Plus / Minus

                                                                            
Query: 87       tttgcaaaggaactaggtgcatcagcaaaacagacataacagcacacgtcagctcaaaaa 146
                ||||||||||| |||| | ||||| |||||||||||| | || |  | ||||||  ||||
Sbjct: 29776918 tttgcaaaggagctag-tacatcaacaaaacagacatgaaagtaagcatcagcttcaaaa 29776860

                                                                            
Query: 147      ttcaccgagctgatggttt-gcatgatttgtgctacaagtacacaaccttggtcaatgcg 205
                ||||||||||||| ||||| ||| || ||| |||||| ||||| ||| |  ||||||| |
Sbjct: 29776859 ttcaccgagctgacggttttgcaggacttgggctacacgtacagaacttcagtcaatgag 29776800

                                                                            
Query: 206      caggctcgggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctgg 265
                |      |||||| || || | |||||| | || |||| |||||||||||||||||||||
Sbjct: 29776799 c------gggcttattctcgactgtgtagggatagtactctttgccattgtccactctgg 29776746

                                                                            
Query: 266      tagtattaccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatga 325
                |||| || || |||||||||||    |||||||| || ||||||| ||||||| | ||||
Sbjct: 29776745 tagtgttgccgccaacgtccagcgcagcagatgtaaaagccaggcaagaaccagctatga 29776686

                       
Query: 326      gggcaga 332
                | |||||
Sbjct: 29776685 gcgcaga 29776679
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score =  309 bits (156), Expect = 6e-81
 Identities = 256/288 (88%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                         
Query: 363   ggtggcgccggagacgaaggcgccgatggccccgttgacgaagtcgcgcttcttgcgctg 422
             ||||||||||| |||||||||||||| ||||||||||||| |||||  ||||||||||||
Sbjct: 31470 ggtggcgccggcgacgaaggcgccgacggccccgttgacgtagtcgttcttcttgcgctg 31411

                                                                         
Query: 423   gctctgcacaatctgctccaccccgatgtaaagtcctccgacggcggcgaaagtgacccc 482
             |||| |||| | |||||| || |||||||| || || |||||||||||||| ||| ||||
Sbjct: 31410 gctcagcacgagctgctcgacgccgatgtagaggcccccgacggcggcgaacgtggcccc 31351

                                                                         
Query: 483   gtagctgccgcacatcttgagcgtccggacgaggcccgggagcgccgacgtggcgctcca 542
             ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
Sbjct: 31350 gtagctgccgcacatcttgagcgtccggatgagccccgggagcg-cgacgtggcgctcga 31292

                                                                         
Query: 543   cccggggcacgtcgtaccaggtggcgacgatggtgccccagatggtgcccgcggccagac 602
             ||||||||||||||| ||| || |||||||  |||||||||||||| ||||||||||| |
Sbjct: 31291 cccggggcacgtcgtgccatgtcgcgacgaccgtgccccagatggtccccgcggccagcc 31232

                                                             
Query: 603   ccgtcgcggcgcccttcaccgtcttcgtggccggcgagtcatcctcca 650
             ||||||| ||| ||||||||||||||||  |||||| ||| |||||||
Sbjct: 31231 ccgtcgccgcggccttcaccgtcttcgtcaccggcgtgtcctcctcca 31184



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 197/247 (79%), Gaps = 8/247 (3%)
 Strand = Plus / Minus

                                                                         
Query: 87    tttgcaaaggaactaggtgcatcagcaaaacagacataacagcacacgtcagctcaaaaa 146
             ||||||||||| |||| | ||||| |||||||||||| | || |  | ||||||  ||||
Sbjct: 33263 tttgcaaaggagctag-tacatcaacaaaacagacatgaaagtaagcatcagcttcaaaa 33205

                                                                         
Query: 147   ttcaccgagctgatggttt-gcatgatttgtgctacaagtacacaaccttggtcaatgcg 205
             ||||||||||||| ||||| ||| || ||| |||||| ||||| ||| |  ||||||| |
Sbjct: 33204 ttcaccgagctgacggttttgcaggacttgggctacacgtacagaacttcagtcaatgag 33145

                                                                         
Query: 206   caggctcgggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctgg 265
             |      |||||| || || | |||||| | || |||| |||||||||||||||||||||
Sbjct: 33144 c------gggcttattctcgactgtgtagggatagtactctttgccattgtccactctgg 33091

                                                                         
Query: 266   tagtattaccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatga 325
             |||| || || |||||||||||    |||||||| || ||||||| ||||||| | ||||
Sbjct: 33090 tagtgttgccgccaacgtccagcgcagcagatgtaaaagccaggcaagaaccagctatga 33031

                    
Query: 326   gggcaga 332
             | |||||
Sbjct: 33030 gcgcaga 33024
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score =  309 bits (156), Expect = 6e-81
 Identities = 256/288 (88%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                          
Query: 363    ggtggcgccggagacgaaggcgccgatggccccgttgacgaagtcgcgcttcttgcgctg 422
              ||||||||||| |||||||||||||| ||||||||||||| |||||  ||||||||||||
Sbjct: 144104 ggtggcgccggcgacgaaggcgccgacggccccgttgacgtagtcgttcttcttgcgctg 144045

                                                                          
Query: 423    gctctgcacaatctgctccaccccgatgtaaagtcctccgacggcggcgaaagtgacccc 482
              |||| |||| | |||||| || |||||||| || || |||||||||||||| ||| ||||
Sbjct: 144044 gctcagcacgagctgctcgacgccgatgtagaggcccccgacggcggcgaacgtggcccc 143985

                                                                          
Query: 483    gtagctgccgcacatcttgagcgtccggacgaggcccgggagcgccgacgtggcgctcca 542
              ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
Sbjct: 143984 gtagctgccgcacatcttgagcgtccggatgagccccgggagcg-cgacgtggcgctcga 143926

                                                                          
Query: 543    cccggggcacgtcgtaccaggtggcgacgatggtgccccagatggtgcccgcggccagac 602
              ||||||||||||||| ||| || |||||||  |||||||||||||| ||||||||||| |
Sbjct: 143925 cccggggcacgtcgtgccatgtcgcgacgaccgtgccccagatggtccccgcggccagcc 143866

                                                              
Query: 603    ccgtcgcggcgcccttcaccgtcttcgtggccggcgagtcatcctcca 650
              ||||||| ||| ||||||||||||||||  |||||| ||| |||||||
Sbjct: 143865 ccgtcgccgcggccttcaccgtcttcgtcaccggcgtgtcctcctcca 143818



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 197/247 (79%), Gaps = 8/247 (3%)
 Strand = Plus / Minus

                                                                          
Query: 87     tttgcaaaggaactaggtgcatcagcaaaacagacataacagcacacgtcagctcaaaaa 146
              ||||||||||| |||| | ||||| |||||||||||| | || |  | ||||||  ||||
Sbjct: 145897 tttgcaaaggagctag-tacatcaacaaaacagacatgaaagtaagcatcagcttcaaaa 145839

                                                                          
Query: 147    ttcaccgagctgatggttt-gcatgatttgtgctacaagtacacaaccttggtcaatgcg 205
              ||||||||||||| ||||| ||| || ||| |||||| ||||| ||| |  ||||||| |
Sbjct: 145838 ttcaccgagctgacggttttgcaggacttgggctacacgtacagaacttcagtcaatgag 145779

                                                                          
Query: 206    caggctcgggcttcttttccattgtgtatgcatggtacgctttgccattgtccactctgg 265
              |      |||||| || || | |||||| | || |||| |||||||||||||||||||||
Sbjct: 145778 c------gggcttattctcgactgtgtagggatagtactctttgccattgtccactctgg 145725

                                                                          
Query: 266    tagtattaccaccaacgtccaggatggcagatgtgaatgccaggctagaaccaccgatga 325
              |||| || || |||||||||||    |||||||| || ||||||| ||||||| | ||||
Sbjct: 145724 tagtgttgccgccaacgtccagcgcagcagatgtaaaagccaggcaagaaccagctatga 145665

                     
Query: 326    gggcaga 332
              | |||||
Sbjct: 145664 gcgcaga 145658
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 359     agacggtggcgccggagacga 379
               |||||||||||||||||||||
Sbjct: 3396153 agacggtggcgccggagacga 3396133
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>ref|NM_103298.1| Arabidopsis thaliana unknown protein AT1G36030 mRNA, complete cds
          Length = 243

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 127 gaactaggtgcatcagcaaa 146
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>ref|NM_179912.1| Arabidopsis thaliana unknown protein AT2G35280 mRNA, complete cds
          Length = 492

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 127 gaactaggtgcatcagcaaa 146
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>ref|NM_113943.1| Arabidopsis thaliana unknown protein AT3G30430 mRNA, complete cds
          Length = 345

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 127 gaactaggtgcatcagcaaa 146
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>gb|BT015535.1| Arabidopsis thaliana At3g30430 mRNA sequence
          Length = 342

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 124 gaactaggtgcatcagcaaa 143
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>gb|AY196994.1| Streptomyces griseoruber heda cluster, complete sequence
          Length = 45603

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   cggtggcgccggagacgaag 381
             ||||||||||||||||||||
Sbjct: 16966 cggtggcgccggagacgaag 16985
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>gb|AC142405.4| Mus musculus BAC clone RP24-559P3 from chromosome 5, complete sequence
          Length = 144109

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tgaagcaaaataaagcaaga 34
              ||||||||||||||||||||
Sbjct: 107174 tgaagcaaaataaagcaaga 107193
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>gb|BT011798.1| Arabidopsis thaliana At1g36030 mRNA sequence
          Length = 240

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 124 gaactaggtgcatcagcaaa 143
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>gb|AC149067.3| Mus musculus BAC clone RP23-56C20 from chromosome 7, complete sequence
          Length = 267610

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    ggctctgcacaatctgctcc 441
              ||||||||||||||||||||
Sbjct: 103975 ggctctgcacaatctgctcc 103956
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>gb|DQ446599.1| Arabidopsis thaliana clone pENTR221-At2g35280 F-box family protein
           (At2g35280) gene, complete cds
          Length = 492

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 127 gaactaggtgcatcagcaaa 146
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>gb|AC144710.2| Danio rerio clone CH211-215E4, complete sequence
          Length = 193226

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   catgatttgtgctacaagta 186
             ||||||||||||||||||||
Sbjct: 29168 catgatttgtgctacaagta 29149
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>emb|AL033538.1|HS477H23 Human DNA sequence from clone RP3-477H23 on chromosome 22q12.1-12.2,
             complete sequence
          Length = 114600

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 309   gctagaaccaccgatgagggcaga 332
             |||||||||||| |||||||||||
Sbjct: 82943 gctagaaccacccatgagggcaga 82966
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>emb|CR925744.7| Zebrafish DNA sequence from clone RP71-37A9 in linkage group 11,
             complete sequence
          Length = 169494

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    aaaataaagcaagatattta 40
             ||||||||||||||||||||
Sbjct: 67304 aaaataaagcaagatattta 67323
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>emb|AJ938012.1| Aeromonas caviae transposon Tn903-interrupted sequence, partial
           fstC gene for putative colicin receptor
          Length = 331

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 ggcgccggagacgaaggcgc 385
           ||||||||||||||||||||
Sbjct: 81  ggcgccggagacgaaggcgc 62
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>emb|BX927244.11| Zebrafish DNA sequence from clone CH211-116O3 in linkage group 15,
             complete sequence
          Length = 152919

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ctttgccattgtccactctg 264
             ||||||||||||||||||||
Sbjct: 91683 ctttgccattgtccactctg 91664
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>emb|CR394525.8| Zebrafish DNA sequence from clone DKEY-24N17 in linkage group 10,
              complete sequence
          Length = 215862

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    ttttccattgtgtatgcatg 239
              ||||||||||||||||||||
Sbjct: 162424 ttttccattgtgtatgcatg 162405
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>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
            sequence
          Length = 91863

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   gaactaggtgcatcagcaaa 115
            ||||||||||||||||||||
Sbjct: 9480 gaactaggtgcatcagcaaa 9499
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>gb|AC026811.5| Homo sapiens chromosome 5 clone RP3_474K3, complete sequence
          Length = 159147

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    aaagcaagatatttattcca 45
             ||||||||||||||||||||
Sbjct: 44323 aaagcaagatatttattcca 44342
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>gb|AC091387.2| Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone
              BACR13P15, complete sequence
          Length = 171222

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      atcgtaaccatgatgaagca 21
              ||||||||||||||||||||
Sbjct: 155682 atcgtaaccatgatgaagca 155663
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>emb|BX664738.14| Zebrafish DNA sequence from clone DKEY-240A9 in linkage group 8,
             complete sequence
          Length = 180024

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   catgatttgtgctacaagta 186
             ||||||||||||||||||||
Sbjct: 76108 catgatttgtgctacaagta 76127
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>gb|AC007329.7|AC007329 Drosophila melanogaster, chromosome 2R, region 50B-50C, BAC clone
              BACR14P04, complete sequence
          Length = 126140

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      atcgtaaccatgatgaagca 21
              ||||||||||||||||||||
Sbjct: 107494 atcgtaaccatgatgaagca 107513
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>gb|AC021666.5|AC021666 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete
             sequence
          Length = 93859

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gaactaggtgcatcagcaaa 115
             ||||||||||||||||||||
Sbjct: 38254 gaactaggtgcatcagcaaa 38235
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>gb|AC079282.1|AC079282 Arabidopsis thaliana chromosome 1 BAC F7F7 genomic sequence, complete
             sequence
          Length = 23712

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gaactaggtgcatcagcaaa 115
             ||||||||||||||||||||
Sbjct: 12182 gaactaggtgcatcagcaaa 12201
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>gb|AC078806.18| Homo sapiens 3 BAC RP11-59B20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 141059

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     gcaaaataaagcaagatatttatt 42
              |||||||||| |||||||||||||
Sbjct: 136662 gcaaaataaaacaagatatttatt 136639
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>dbj|AP000389.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSJ3
          Length = 55739

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gaactaggtgcatcagcaaa 115
           ||||||||||||||||||||
Sbjct: 588 gaactaggtgcatcagcaaa 607
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>dbj|AP002064.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T26G12
          Length = 84785

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gaactaggtgcatcagcaaa 115
             ||||||||||||||||||||
Sbjct: 15601 gaactaggtgcatcagcaaa 15620
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     tggcgccggagacgaaggcg 384
               ||||||||||||||||||||
Sbjct: 2363956 tggcgccggagacgaaggcg 2363975
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>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence
          Length = 211316

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     aaaataaagcaagatatttattcc 44
              ||||||||||| ||||||||||||
Sbjct: 193262 aaaataaagcaggatatttattcc 193239
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>emb|CR848009.9| Zebrafish DNA sequence from clone CH211-210O21 in linkage group 15,
             complete sequence
          Length = 157273

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ctttgccattgtccactctg 264
             ||||||||||||||||||||
Sbjct: 38675 ctttgccattgtccactctg 38694
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>gb|AE003817.3| Drosophila melanogaster chromosome 2R, section 33 of 73 of the complete
             sequence
          Length = 265472

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     atcgtaaccatgatgaagca 21
             ||||||||||||||||||||
Sbjct: 67504 atcgtaaccatgatgaagca 67523
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>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete
             sequence
          Length = 171738

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    aaaataaagcaagatatttattcc 44
             ||||||||||| ||||||||||||
Sbjct: 94399 aaaataaagcaggatatttattcc 94422
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>gb|AC118926.13| Mus musculus chromosome 5, clone RP23-323D23, complete sequence
          Length = 232698

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tgaagcaaaataaagcaaga 34
             ||||||||||||||||||||
Sbjct: 23022 tgaagcaaaataaagcaaga 23041
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>dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-334E6, complete
              sequences
          Length = 191362

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 645    cctccatcgctccctttcct 664
              ||||||||||||||||||||
Sbjct: 113141 cctccatcgctccctttcct 113160
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>gb|AC110885.14| Mus musculus chromosome 7, clone RP24-342P18, complete sequence
          Length = 223826

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 332    acttaatgctctttcctctgtagc 355
              ||||| ||||||||||||||||||
Sbjct: 135754 acttactgctctttcctctgtagc 135777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,977,715
Number of Sequences: 3902068
Number of extensions: 4977715
Number of successful extensions: 92887
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92590
Number of HSP's gapped (non-prelim): 283
length of query: 668
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 645
effective length of database: 17,143,297,704
effective search space: 11057427019080
effective search space used: 11057427019080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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