ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd3f16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472823.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 672 Score = 268 bits (135), Expect = 2e-68 Identities = 297/351 (84%) Strand = Plus / Minus Query: 203 cttcttgggtggtggatttcctccggcgagcagcacgtacacatagaaacaagccatcgc 262 |||||| ||||||||||||||||||| ||||||||| || | |||||||||||||| || Sbjct: 645 cttcttaggtggtggatttcctccggagagcagcacataagcgtagaaacaagccatggc 586 Query: 263 agtgctcagtgaagcgtagaagccccaaggaagaattctattcgtcagtaagtatgcatg 322 ||||||||| || || |||||| |||| || || |||||||| |||| | ||| ||||| Sbjct: 585 agtgctcagagatgcatagaaggcccaggggaggattctatttgtcaagatgtaggcatg 526 Query: 323 agaatacttccatgcaaggacagcagaaattgctgcttggcccaatataaacaggaagct 382 |||||||||||||| || |||||||||||||||||||||||||| ||||| | ||| || Sbjct: 525 ggaatacttccatgctagaacagcagaaattgctgcttggcccaagataaatatgaaact 466 Query: 383 ggatcttccactcctccaaaagtttaaactgagggtactaagaaagagcgtagcaagccc 442 |||| ||||||||||||| || || | ||||||||||| |||||||||||| | ||||| Sbjct: 465 ggattttccactcctccagaatttaagactgagggtaccaagaaagagcgtggtgagccc 406 Query: 443 aggtgcaacacctaggacaagacttacagtactcctagagaaaaagtagcctagaagccc 502 ||||||||||||| ||||| |||| ||||| || || |||| ||| ||||||||||| Sbjct: 405 tggtgcaacacctaaaacaaggcttatggtacttcttgaaaaaatgtatcctagaagccc 346 Query: 503 catgcagaacaagagaccaccgaaaggaatcccaaaacaaaaatcatggat 553 ||| ||||| | |||||||| ||||| ||||||| |||||||||||||| Sbjct: 345 catacagaatagaagaccaccaaaagggatcccaaggcaaaaatcatggat 295
>dbj|AK070483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049G07, full insert sequence Length = 1016 Score = 268 bits (135), Expect = 2e-68 Identities = 297/351 (84%) Strand = Plus / Minus Query: 203 cttcttgggtggtggatttcctccggcgagcagcacgtacacatagaaacaagccatcgc 262 |||||| ||||||||||||||||||| ||||||||| || | |||||||||||||| || Sbjct: 722 cttcttaggtggtggatttcctccggagagcagcacataagcgtagaaacaagccatggc 663 Query: 263 agtgctcagtgaagcgtagaagccccaaggaagaattctattcgtcagtaagtatgcatg 322 ||||||||| || || |||||| |||| || || |||||||| |||| | ||| ||||| Sbjct: 662 agtgctcagagatgcatagaaggcccaggggaggattctatttgtcaagatgtaggcatg 603 Query: 323 agaatacttccatgcaaggacagcagaaattgctgcttggcccaatataaacaggaagct 382 |||||||||||||| || |||||||||||||||||||||||||| ||||| | ||| || Sbjct: 602 ggaatacttccatgctagaacagcagaaattgctgcttggcccaagataaatatgaaact 543 Query: 383 ggatcttccactcctccaaaagtttaaactgagggtactaagaaagagcgtagcaagccc 442 |||| ||||||||||||| || || | ||||||||||| |||||||||||| | ||||| Sbjct: 542 ggattttccactcctccagaatttaagactgagggtaccaagaaagagcgtggtgagccc 483 Query: 443 aggtgcaacacctaggacaagacttacagtactcctagagaaaaagtagcctagaagccc 502 ||||||||||||| ||||| |||| ||||| || || |||| ||| ||||||||||| Sbjct: 482 tggtgcaacacctaaaacaaggcttatggtacttcttgaaaaaatgtatcctagaagccc 423 Query: 503 catgcagaacaagagaccaccgaaaggaatcccaaaacaaaaatcatggat 553 ||| ||||| | |||||||| ||||| ||||||| |||||||||||||| Sbjct: 422 catacagaatagaagaccaccaaaagggatcccaaggcaaaaatcatggat 372
>dbj|AK059742.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G01, full insert sequence Length = 972 Score = 268 bits (135), Expect = 2e-68 Identities = 297/351 (84%) Strand = Plus / Minus Query: 203 cttcttgggtggtggatttcctccggcgagcagcacgtacacatagaaacaagccatcgc 262 |||||| ||||||||||||||||||| ||||||||| || | |||||||||||||| || Sbjct: 682 cttcttaggtggtggatttcctccggagagcagcacataagcgtagaaacaagccatggc 623 Query: 263 agtgctcagtgaagcgtagaagccccaaggaagaattctattcgtcagtaagtatgcatg 322 ||||||||| || || |||||| |||| || || |||||||| |||| | ||| ||||| Sbjct: 622 agtgctcagagatgcatagaaggcccaggggaggattctatttgtcaagatgtaggcatg 563 Query: 323 agaatacttccatgcaaggacagcagaaattgctgcttggcccaatataaacaggaagct 382 |||||||||||||| || |||||||||||||||||||||||||| ||||| | ||| || Sbjct: 562 ggaatacttccatgctagaacagcagaaattgctgcttggcccaagataaatatgaaact 503 Query: 383 ggatcttccactcctccaaaagtttaaactgagggtactaagaaagagcgtagcaagccc 442 |||| ||||||||||||| || || | ||||||||||| |||||||||||| | ||||| Sbjct: 502 ggattttccactcctccagaatttaagactgagggtaccaagaaagagcgtggtgagccc 443 Query: 443 aggtgcaacacctaggacaagacttacagtactcctagagaaaaagtagcctagaagccc 502 ||||||||||||| ||||| |||| ||||| || || |||| ||| ||||||||||| Sbjct: 442 tggtgcaacacctaaaacaaggcttatggtacttcttgaaaaaatgtatcctagaagccc 383 Query: 503 catgcagaacaagagaccaccgaaaggaatcccaaaacaaaaatcatggat 553 ||| ||||| | |||||||| ||||| ||||||| |||||||||||||| Sbjct: 382 catacagaatagaagaccaccaaaagggatcccaaggcaaaaatcatggat 332
>gb|BT018079.1| Zea mays clone EL01N0551H09.c mRNA sequence Length = 684 Score = 184 bits (93), Expect = 2e-43 Identities = 294/361 (81%) Strand = Plus / Minus Query: 198 gccaacttcttgggtggtggatttcctccggcgagcagcacgtacacatagaaacaagcc 257 ||||||||||| || || ||||||||||| || || ||||| || | ||||||||| || Sbjct: 466 gccaacttcttaggcgggggatttcctcccgcaagtagcacataggcgtagaaacaaccc 407 Query: 258 atcgcagtgctcagtgaagcgtagaagccccaaggaagaattctattcgtcagtaagtat 317 || |||||||||||||| |||||||||||||||||||| | |||||| |||| ||||| Sbjct: 406 attgcagtgctcagtgacgcgtagaagccccaaggaaggagtctatttgtcaagaagtaa 347 Query: 318 gcatgagaatacttccatgcaaggacagcagaaattgctgcttggcccaatataaacagg 377 |||||||| || |||||||| |||| ||||||||||||||| || |||| |||| |||| Sbjct: 346 gcatgagagtatttccatgccaggaaagcagaaattgctgcctgagccaagataagcagg 287 Query: 378 aagctggatcttccactcctccaaaagtttaaactgagggtactaagaaagagcgtagca 437 ||||||||||| || |||||||| || || | |||||| || | ||| | || || || Sbjct: 286 aagctggatctgccgctcctccagaacttcagactgagagtgccaagtagcagagtggct 227 Query: 438 agcccaggtgcaacacctaggacaagacttacagtactcctagagaaaaagtagcctaga 497 ||||| ||||||| || | ||||||||||| || || || ||||| | ||| |||||| Sbjct: 226 agccctggtgcaatgcccaagacaagacttatggtgcttctggagaagatgtatcctaga 167 Query: 498 agccccatgcagaacaagagaccaccgaaaggaatcccaaaacaaaaatcatggatctta 557 |||||||| |||| || |||||||| ||||| ||||||| || || |||||||| ||| Sbjct: 166 agccccatagagaataaaagaccaccaaaagggatcccaaggcagaagtcatggatttta 107 Query: 558 g 558 | Sbjct: 106 g 106
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 355 ctgcttggcccaatataaacaggaagctggatcttccactcctccaaaagtttaaactga 414 ||||||||||||| ||||| | ||| |||||| ||||||||||||| || || | ||||| Sbjct: 23476108 ctgcttggcccaagataaatatgaaactggattttccactcctccagaatttaagactga 23476167 Query: 415 gggtactaagaaagagcgtagcaagcccaggtgcaacacctaggacaagacttacagtac 474 |||||| |||||||||||| | ||||| ||||||||||||| ||||| |||| |||| Sbjct: 23476168 gggtaccaagaaagagcgtggtgagccctggtgcaacacctaaaacaaggcttatggtac 23476227 Query: 475 tcctagagaaaaagtagcctagaagccccatgcagaa 511 | || || |||| ||| |||||||||||||| ||||| Sbjct: 23476228 ttcttgaaaaaatgtatcctagaagccccatacagaa 23476264 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 203 cttcttgggtggtggatttcctccggcgagcagcacgtacacatagaaacaagccatcgc 262 |||||| ||||||||||||||||||| ||||||||| || | |||||||||||||| || Sbjct: 23475656 cttcttaggtggtggatttcctccggagagcagcacataagcgtagaaacaagccatggc 23475715 Query: 263 agtgct 268 |||||| Sbjct: 23475716 agtgct 23475721 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 318 gcatgagaatacttccatgcaaggacagcagaaattgctgc 358 ||||| |||||||||||||| || ||||||||||||||||| Sbjct: 23475938 gcatgggaatacttccatgctagaacagcagaaattgctgc 23475978
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 355 ctgcttggcccaatataaacaggaagctggatcttccactcctccaaaagtttaaactga 414 ||||||||||||| ||||| | ||| |||||| ||||||||||||| || || | ||||| Sbjct: 32011 ctgcttggcccaagataaatatgaaactggattttccactcctccagaatttaagactga 32070 Query: 415 gggtactaagaaagagcgtagcaagcccaggtgcaacacctaggacaagacttacagtac 474 |||||| |||||||||||| | ||||| ||||||||||||| ||||| |||| |||| Sbjct: 32071 gggtaccaagaaagagcgtggtgagccctggtgcaacacctaaaacaaggcttatggtac 32130 Query: 475 tcctagagaaaaagtagcctagaagccccatgcagaa 511 | || || |||| ||| |||||||||||||| ||||| Sbjct: 32131 ttcttgaaaaaatgtatcctagaagccccatacagaa 32167 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 203 cttcttgggtggtggatttcctccggcgagcagcacgtacacatagaaacaagccatcgc 262 |||||| ||||||||||||||||||| ||||||||| || | |||||||||||||| || Sbjct: 31559 cttcttaggtggtggatttcctccggagagcagcacataagcgtagaaacaagccatggc 31618 Query: 263 agtgct 268 |||||| Sbjct: 31619 agtgct 31624 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 318 gcatgagaatacttccatgcaaggacagcagaaattgctgc 358 ||||| |||||||||||||| || ||||||||||||||||| Sbjct: 31841 gcatgggaatacttccatgctagaacagcagaaattgctgc 31881
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence Length = 252420 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 atacaaatatagaagaagacat 91 |||||||||||||||||||||| Sbjct: 143128 atacaaatatagaagaagacat 143149
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 506 gcagaacaagagaccaccgaa 526 ||||||||||||||||||||| Sbjct: 1720642 gcagaacaagagaccaccgaa 1720662
>gb|AC123618.26| Mus musculus chromosome 12, clone RP23-38N23, complete sequence Length = 201596 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 agtttaaactgagggtactaagaa 426 ||||||||||| |||||||||||| Sbjct: 180468 agtttaaactgtgggtactaagaa 180445
>ref|XM_954972.1| Neurospora crassa OR74A hypothetical protein (NCU05805.1) partial mRNA Length = 1584 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gaagccccatgcagaacaag 515 |||||||||||||||||||| Sbjct: 284 gaagccccatgcagaacaag 303
>ref|XM_325659.1| Neurospora crassa OR74A hypothetical protein (NCU05805.1) partial mRNA Length = 1584 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gaagccccatgcagaacaag 515 |||||||||||||||||||| Sbjct: 284 gaagccccatgcagaacaag 303
>gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome 12, complete sequence Length = 201510 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 aaaaatcatggatcttagag 560 |||||||||||||||||||| Sbjct: 116229 aaaaatcatggatcttagag 116248
>gb|AC110815.6| Mus musculus BAC clone RP23-2I10 from chromosome 12, complete sequence Length = 186797 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aatacttccatgcaaggaca 344 |||||||||||||||||||| Sbjct: 90760 aatacttccatgcaaggaca 90741
>gb|AY312585.1| Listonella anguillarum strain 775 plasmid pJM1, complete sequence Length = 65009 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gtattatttgctcgatgtta 46 |||||||||||||||||||| Sbjct: 1551 gtattatttgctcgatgtta 1570
>ref|XM_724030.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01371) partial mRNA Length = 1137 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 catacaaatatagaagaaga 88 |||||||||||||||||||| Sbjct: 187 catacaaatatagaagaaga 206
>ref|XM_673721.1| Plasmodium berghei strain ANKA hypothetical protein (PB000780.03.0) partial mRNA Length = 1050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 catacaaatatagaagaaga 88 |||||||||||||||||||| Sbjct: 184 catacaaatatagaagaaga 203
>emb|AL607131.15| Mouse DNA sequence from clone RP23-372H19 on chromosome 13 Contains the Agtr1a gene for angiotensin receptor 1a, a novel pseudogene and a CpG island, complete sequence Length = 172871 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 aaggaatcccaaaacaaaaa 545 |||||||||||||||||||| Sbjct: 117415 aaggaatcccaaaacaaaaa 117396
>gb|AC105400.3| Homo sapiens BAC clone RP11-748L11 from 4, complete sequence Length = 90462 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 atgagaatacttccatgcaa 339 |||||||||||||||||||| Sbjct: 82839 atgagaatacttccatgcaa 82858
>gb|AC007668.7| Drosophila melanogaster, chromosome 3R, region 87C-87C, BAC clone BACR02G11, complete sequence Length = 167239 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 ccatgcaaggacagcagaaattgc 355 |||||||||| ||||||||||||| Sbjct: 66898 ccatgcaagggcagcagaaattgc 66875
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 caggtgcaacacctaggaca 461 |||||||||||||||||||| Sbjct: 23549164 caggtgcaacacctaggaca 23549145
>gb|AC022882.5|AC022882 Homo sapiens chromosome 11, clone RP11-444K7, complete sequence Length = 174469 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 70 atacaaatatagaagaagacataactct 97 |||||||| ||| ||||||||||||||| Sbjct: 74859 atacaaatttagtagaagacataactct 74886
>gb|AC096718.3| Homo sapiens BAC clone RP11-10P19 from 4, complete sequence Length = 166745 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ctagagaaaaagtagcctag 496 |||||||||||||||||||| Sbjct: 112330 ctagagaaaaagtagcctag 112311
>gb|AF288992.1|AF288992 Homo sapiens 15 kDa selenoprotein (SEP15) gene, complete cds Length = 64165 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aattaagctaggataaaaaa 159 |||||||||||||||||||| Sbjct: 7674 aattaagctaggataaaaaa 7655
>dbj|AK105219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-E07, full insert sequence Length = 546 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 caggtgcaacacctaggaca 461 |||||||||||||||||||| Sbjct: 205 caggtgcaacacctaggaca 186
>emb|BX004884.10| Zebrafish DNA sequence from clone DKEY-6N6 in linkage group 8, complete sequence Length = 225442 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 aatcctactattaggaaacataca 74 ||||||||||| |||||||||||| Sbjct: 24307 aatcctactatcaggaaacataca 24330
>emb|CR974423.21| Mouse DNA sequence from clone RP23-182F9 on chromosome 12, complete sequence Length = 238441 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 agtttaaactgagggtactaagaa 426 ||||||||||| |||||||||||| Sbjct: 133167 agtttaaactgtgggtactaagaa 133144
>gb|AE003696.3| Drosophila melanogaster chromosome 3R, section 34 of 118 of the complete sequence Length = 265467 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 ccatgcaaggacagcagaaattgc 355 |||||||||| ||||||||||||| Sbjct: 102498 ccatgcaagggcagcagaaattgc 102475
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 caggtgcaacacctaggaca 461 |||||||||||||||||||| Sbjct: 23477355 caggtgcaacacctaggaca 23477336
>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157690 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 caggtgcaacacctaggaca 461 |||||||||||||||||||| Sbjct: 157246 caggtgcaacacctaggaca 157265
>emb|BX248510.3| Zebrafish DNA sequence from clone DKEY-88P24 in linkage group 10, complete sequence Length = 170386 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 ttacagtactcctagagaaaaagt 489 |||||||||||||||||| ||||| Sbjct: 43271 ttacagtactcctagagataaagt 43248
>emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chromosome 12, complete sequence Length = 208848 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aatacttccatgcaaggaca 344 |||||||||||||||||||| Sbjct: 159803 aatacttccatgcaaggaca 159784
>gb|AY255699.3| Listonella anguillarum plasmid pEIB1 JM01 to JM44 genes, complete sequence Length = 66164 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gtattatttgctcgatgtta 46 |||||||||||||||||||| Sbjct: 25192 gtattatttgctcgatgtta 25211
>dbj|AP002505.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-756J15, complete sequence Length = 169230 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tactattaggaaacatacaaatat 79 ||||||||||||| |||||||||| Sbjct: 151705 tactattaggaaaaatacaaatat 151682
>emb|AL121989.12|HSDJ604K5 Human DNA sequence from clone RP4-604K5 on chromosome 1p22.2-31.1. Contains a gene for a 15 kDa selenoprotein and a part of the heparan sulfate 2-sulfotransferase gene (KIAA0448). Contains ESTs, STSs, GSSs and CpG islands, complete sequence Length = 127201 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aattaagctaggataaaaaa 159 |||||||||||||||||||| Sbjct: 80675 aattaagctaggataaaaaa 80694
>dbj|AP002439.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-691H4, complete sequence Length = 188604 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tactattaggaaacatacaaatat 79 ||||||||||||| |||||||||| Sbjct: 58947 tactattaggaaaaatacaaatat 58924 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,565,342 Number of Sequences: 3902068 Number of extensions: 5565342 Number of successful extensions: 101924 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101738 Number of HSP's gapped (non-prelim): 185 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
