ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AUXI_BOVIN (Q27974) Auxilin 30 4.0
2PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineraliz... 29 6.8

>AUXI_BOVIN (Q27974) Auxilin|
          Length = 910

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 35  YTPIITHDEVHEYRTGHG--YMNISHTHTGRQVLIMYHLRST 154
           YT     + + EYR   G  ++ +S T  G  V+ MYHLRST
Sbjct: 262 YTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRST 303



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>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)|
          Length = 416

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 359 SPGAPSSRRPGLAPRPPSGT 418
           SPGA     PGLAPR P+ T
Sbjct: 159 SPGAAMKTEPGLAPRTPAAT 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,939,044
Number of Sequences: 219361
Number of extensions: 1108294
Number of successful extensions: 3316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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