ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2p19 |
|---|---|
| Clone Library Name | barley_pub |
>SKU5_ARATH (Q9SU40) Putative monocopper oxidase precursor (Skewed roots)| Length = 587 Score = 47.8 bits (112), Expect(2) = 4e-13 Identities = 24/40 (60%), Positives = 28/40 (70%) Frame = -2 Query: 560 GQETYIRVVDPDGGYNVTESVLPDNALFCGLLKEKQKAQK 441 GQETY+RVV+PD N TE PDN L+CG L + QK QK Sbjct: 520 GQETYVRVVNPDEN-NKTEFGHPDNVLYCGALSKLQKPQK 558 Score = 46.6 bits (109), Expect(2) = 4e-13 Identities = 17/25 (68%), Positives = 24/25 (96%) Frame = -3 Query: 658 RVFPGAWTAVLLSLDSPGFWNVRTE 584 +V+PGAW+A+L+SLD+PG WN+RTE Sbjct: 488 QVYPGAWSAILISLDNPGAWNLRTE 512
>SKS1_ARATH (Q8VXX5) Monocopper oxidase-like protein SKS1 precursor| Length = 589 Score = 42.4 bits (98), Expect(3) = 4e-10 Identities = 16/24 (66%), Positives = 20/24 (83%) Frame = -3 Query: 655 VFPGAWTAVLLSLDSPGFWNVRTE 584 V+PG WTAVL+SLD+ G WN+R E Sbjct: 492 VYPGGWTAVLISLDNVGVWNIRVE 515 Score = 39.7 bits (91), Expect(3) = 4e-10 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = -2 Query: 560 GQETYIRVVDPDGGYNVTESVLPDNALFCGLLKEKQKAQ 444 G+ETY+R+ +P+ TE PDN L+CG LK QK Q Sbjct: 523 GEETYMRITNPEED-GKTEMDPPDNVLYCGALKNLQKEQ 560 Score = 21.2 bits (43), Expect(3) = 4e-10 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = -1 Query: 582 NLDTWYLG 559 NLD WYLG Sbjct: 516 NLDRWYLG 523
>ASO_BRANA (Q00624) L-ascorbate oxidase homolog precursor (EC 1.10.3.3)| (Ascorbase) Length = 555 Score = 38.1 bits (87), Expect = 0.026 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -3 Query: 667 HHSRVFPGAWTAVLLSLDSPGFWNVRTEKS 578 H +V+P W A+LL+ D+ G WNVR+E + Sbjct: 477 HTVQVYPKCWAAILLTFDNCGMWNVRSENT 506
>NTP3_TOBAC (P29162) Pollen-specific protein NTP303 precursor| Length = 554 Score = 36.2 bits (82), Expect = 0.098 Identities = 11/25 (44%), Positives = 20/25 (80%) Frame = -3 Query: 658 RVFPGAWTAVLLSLDSPGFWNVRTE 584 +V+P +W A++L+ D+ G WN+R+E Sbjct: 481 QVYPNSWAAIMLTFDNAGMWNLRSE 505
>TLE2_BRARE (O13166) Groucho 2 protein| Length = 761 Score = 31.6 bits (70), Expect = 2.4 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Frame = +1 Query: 466 RRPQKRALSGSTDSVTL*PPSGSTTLMYVSWPEVPGVQISPCARSRTPGCRATTGRRSML 645 RRP A SGST S PP + S P + +P + TPG T G R +L Sbjct: 291 RRPASVASSGSTPSSKTKPPEHNDK---SSTPGLKSKAPTPRNDAPTPGTSTTPGLRPIL 347 Query: 646 QETPWSGATGNAV--PLCC 696 + P A+ PL C Sbjct: 348 GKPPMEALAAPALRTPLTC 366
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = +2 Query: 473 HRRGRCLVAPIQSRYSLRQDPP--P*CTSPGPRYQVSRFLRAHVPEPRAVERQQDGGPCS 646 H G P + + + PP P C SPGP +H+P R+ D GPC Sbjct: 288 HTLGNVWAGPGSNSFGYQLGPPVTPRCPSPGPPTPPGGCCSSHLP-----AREGDPGPCR 342 Query: 647 R 649 + Sbjct: 343 K 343
>VIPR2_MOUSE (P41588) Vasoactive intestinal polypeptide receptor 2 precursor| (VIP-R-2) (Pituitary adenylate cyclase-activating polypeptide type III receptor) (PACAP type III receptor) (PACAP-R-3) Length = 437 Score = 30.0 bits (66), Expect = 7.0 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 646 GAWTAVLLSLDSPGFWNVRTEKSGHLVPRARRRTSGWWIL 527 GAWTA LSL+ G W + + H +P WW++ Sbjct: 256 GAWTATRLSLEDTGCW----DTNDHSIP--------WWVI 283
>LEG3_CANFA (P38486) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 295 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 377 QPAGSGSVLPRGKPSSTTTHEASEPFVFP*G 469 QP+G G+ P G+PS+ + A+ PF P G Sbjct: 127 QPSGPGAYPPPGQPSAPGAYPAAGPFGIPAG 157
>SYFA_PROAC (Q6A7V5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = +2 Query: 482 GRCL---VAPIQSRYSLRQDPPP*CTSPGPRYQVSRFLRAHVPEPRAVE 619 G+C+ +P+Q L+Q PP SPG ++ + H+P VE Sbjct: 183 GKCMRTATSPVQIHTLLKQQPPVRIISPGKVFRADEYDATHLPVFHQVE 231
>APE1_SCHPO (Q9USX1) Aminopeptidase 1 (EC 3.4.11.-) (Aminopeptidase I)| Length = 882 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/43 (30%), Positives = 18/43 (41%) Frame = +3 Query: 546 VRLLARGTRCPDFSVRTFQNPGLSSDNRTAVHAPGNTLEWCNG 674 V G CP VR + PG S + A TL++ +G Sbjct: 217 VEYFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSG 259
>ERCC2_ARATH (Q8W4M7) DNA repair helicase UVH6 (EC 3.6.1.-) (UV hypersensitive| protein 6) (XPD homolog) (ERCC2 homolog) (RAD3 homolog) (AtUVH6) (AtXPD) Length = 758 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +3 Query: 183 DAHTTLLTSFDKFADAQIMAGPLHPIDGSPRKLN 284 DA + FD+F I +G L PID PR LN Sbjct: 439 DASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLN 472 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,777,652 Number of Sequences: 219361 Number of extensions: 2479243 Number of successful extensions: 6369 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6036 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6364 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
