ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3e18 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 92.4 bits (228), Expect = 8e-19 Identities = 48/121 (39%), Positives = 72/121 (59%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSA 382 +DG +DEY LED E+ +D++ KV NF AWE + E+ + + L + L EAV+ Sbjct: 741 EDGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVNN 800 Query: 381 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSD 202 +I+ LGMQPCE +D V N SH+ L+G+F G +LVR ++ V M++ VRS Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSK 858 Query: 201 D 199 + Sbjct: 859 E 859
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 92.0 bits (227), Expect = 1e-18 Identities = 45/100 (45%), Positives = 62/100 (62%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSA 382 D+G EDEY LED E+ AD++ KV NF AW+ + E E+ + + L + L EAV Sbjct: 744 DEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGN 803 Query: 381 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 262 ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 91.3 bits (225), Expect = 2e-18 Identities = 47/121 (38%), Positives = 72/121 (59%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSA 382 +DG +DEY LED E+ +D++ K+ NF AWE + E+ + + L + L EAV+ Sbjct: 741 EDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEEAVNN 800 Query: 381 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSD 202 +I+ LGMQPCE +D V N SH+ L+GV+ G +LVR ++ V M++ VRS Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSK 858 Query: 201 D 199 + Sbjct: 859 E 859
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 90.9 bits (224), Expect = 2e-18 Identities = 44/100 (44%), Positives = 62/100 (62%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSA 382 D+G EDEY LED E+ AD++ KV NF AW+ + E ++ + + L + L EAV Sbjct: 744 DEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVGN 803 Query: 381 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 262 ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 81.3 bits (199), Expect = 2e-15 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSA 382 DD E Y LE+ ++ +D + V S+F +AWE++ ++ R + + L EN+ +AV Sbjct: 737 DDTYEQTYVLEEVDVNVSDSVQGVAKSSFGSAWEALGDDATREETFQLSTVENIPDAVKK 796 Query: 381 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGIS-GPKEVAMKLAVRS 205 + ILG+ PCE +D V HT LSGVF G VL + + + +AM + ++S Sbjct: 797 ISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKS 856 Query: 204 DDPEV 190 ++P V Sbjct: 857 NEPLV 861
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 57.0 bits (136), Expect = 4e-08 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSA 382 ++G EDEY+++D ++ + D++ SNF ++S++ E+ V Y L + ++ S Sbjct: 775 EEGYEDEYKIDDLDVSAGDFISPAYESNFDGLFDSLEHEASEV--YVLSLLDSFRSTCSR 832 Query: 381 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKE-VAMKLAVRS 205 V +L MQP EGT+ + H LSG + KVL + S E + +K+ R Sbjct: 833 VAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIARG 891 Query: 204 D 202 + Sbjct: 892 E 892
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 42.7 bits (99), Expect = 7e-04 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Frame = -1 Query: 561 DDGVEDEYQLEDFEIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLA--EAV 388 D+G +DEY+++ + + DY+ NF ++ + E V ++E+L+ E V Sbjct: 804 DEGFQDEYEIDSIFLNAGDYVKSSFTGNFSATFDELPCEEVAV----FNIQEDLSIQEVV 859 Query: 387 SAVISILGMQPCEGTDVVQNNSRSHTCLLSG-VFIGNVKVLVRLSFGISGPKEVAMKLAV 211 +I P E T ++S SHT L G + KV +++ I K +A+K+ Sbjct: 860 DKIILNSSCLPVESTQFAPSDSNSHTLKLFGKSALTGSKVALQIKM-IKSSKGLALKVHG 918 Query: 210 RSDD 199 + +D Sbjct: 919 KGED 922
>TILS_HAEDU (Q7VPN7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 428 Score = 32.0 bits (71), Expect = 1.2 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +1 Query: 289 EHT*KQASVRSRIVL-DNIGSLARLHAKDAYNSTHSLSQVLPNTKSILIDPLTFWIHAFP 465 +H + SV I L DN+G L R + Y TH +++L +S+ PLT +H Sbjct: 317 QHFCQILSVNQTIDLPDNLGQLTRQPQQIIYQQTHKTNRLL-LPESLRTVPLTIKLHQTG 375 Query: 466 SISEVRNPHLQHV 504 + ++PH + + Sbjct: 376 KVKRYQHPHSEEM 388
>Y273_CHLMU (Q9PL35) Hypothetical protein TC0273| Length = 367 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +1 Query: 304 QASVRSRIVLDNIGSLARLHAKDAYNSTHSLSQVLPNTKSILIDPL 441 + S+RS VL S + L K+ + +T ++ + LPNTKSIL PL Sbjct: 224 ERSLRSEEVLH---SQSLLRQKELFPNTSNIKKELPNTKSILHTPL 266
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>SAV1_HUMAN (Q9H4B6) Salvador homolog 1 protein (45 kDa WW domain protein)| (hWW45) Length = 383 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +3 Query: 423 HTHRPAHFLDPCFPKHFGSSKPPPSTCNQQK*FQN--LLADTHPQH 554 HT++ A + PC P +PPP T Q+ +N LL +P H Sbjct: 255 HTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYH 300
>SAV1_MOUSE (Q8VEB2) Salvador homolog 1 protein (45 kDa WW domain protein)| (mWW45) Length = 386 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +3 Query: 423 HTHRPAHFLDPCFPKHFGSSKPPPSTCNQQK*FQN--LLADTHPQH 554 HT++ A + PC P +PPP T Q+ +N LL +P H Sbjct: 256 HTNKRAQYRHPCAPSVPRYDQPPPITYQPQQTERNQSLLVPANPYH 301
>TRUB_TREDE (Q73NP8) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 357 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = -1 Query: 522 EIISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSAVISILGMQPCEGT 343 +IISA+ F +++DPE E V L +NL E++ + + + +P E + Sbjct: 61 DIISAEKKTYEAWVEFGTETDTLDPEGEPVLTAPLPSYKNLTESIPSFLGKILQRPPEFS 120 Query: 342 DVVQNNSRSHTCLLSG 295 + N R+ + SG Sbjct: 121 AIKINGKRASDRIRSG 136
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 297 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 190 G + +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>PEPE_PASMU (Q9CNH7) Peptidase E (EC 3.4.13.21) (Alpha-aspartyl dipeptidase)| (Asp-specific dipeptidase) (Dipeptidase E) Length = 234 Score = 29.3 bits (64), Expect = 7.9 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%) Frame = -1 Query: 432 DEYGLGVRENLAEAVSAVISILGMQP----CEGTDVVQNNSRSHTCLLSGVFIGNVKVLV 265 DEY L V++ LAE A++S+ + E DV+ + CLL G++ ++ L+ Sbjct: 50 DEYELKVQKALAELNVAILSVHRAEKHAEIIEKADVIAIGGGNTFCLLKGMYEHHLLPLI 109 Query: 264 RLS-------FGISGPKEVAMKLAVRSDD 199 R FG S VA + + ++D Sbjct: 110 REKVQSGTPYFGWSAGANVAGRSIMTTND 138
>RNPH_LISMO (Q8Y7N6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Frame = -1 Query: 516 ISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSAVISI--LGMQPCE-G 346 ISA+Y + +N RN ES +V + ++ + A+ AV+ + LG + Sbjct: 59 ISAEYSMLPRATNTRNIRES---SKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLD 115 Query: 345 TDVVQNNSRSHTCLLSGVFIGNVKVLVRL 259 DV+Q + + T ++G FI V + +L Sbjct: 116 CDVIQADGGTRTASITGAFIAMVMAIAKL 144
>RNPH_LISMF (Q720J1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Frame = -1 Query: 516 ISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSAVISI--LGMQPCE-G 346 ISA+Y + +N RN ES +V + ++ + A+ AV+ + LG + Sbjct: 59 ISAEYSMLPRATNTRNIRES---SKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLD 115 Query: 345 TDVVQNNSRSHTCLLSGVFIGNVKVLVRL 259 DV+Q + + T ++G FI V + +L Sbjct: 116 CDVIQADGGTRTASITGAFIAMVMAIAKL 144
>RNPH_LISIN (Q92CH1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Frame = -1 Query: 516 ISADYMLKVGVSNFRNAWESMDPESERVDEYGLGVRENLAEAVSAVISI--LGMQPCE-G 346 ISA+Y + +N RN ES +V + ++ + A+ AV+ + LG + Sbjct: 59 ISAEYSMLPRATNTRNIRES---SKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLD 115 Query: 345 TDVVQNNSRSHTCLLSGVFIGNVKVLVRL 259 DV+Q + + T ++G FI V + +L Sbjct: 116 CDVIQADGGTRTASITGAFIAMVMAIAKL 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,072,239 Number of Sequences: 219361 Number of extensions: 1422845 Number of successful extensions: 3612 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3611 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
