ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3e16 |
|---|---|
| Clone Library Name | barley_pub |
>ARPC5_PONPY (Q5R516) Actin-related protein 2/3 complex subunit 5 (ARP2/3| complex 16 kDa subunit) (p16-ARC) Length = 150 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = -3 Query: 496 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLDT 323 ++++ L+Q AL+ AL+ P+ T+ + K +V + +++ + DI+ SLD Sbjct: 40 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 99 Query: 322 EYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILRSL 188 D+LMKY+Y+G + + L+ HEK G+G I+R L Sbjct: 100 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 144
>ARPC5_HUMAN (O15511) Actin-related protein 2/3 complex subunit 5 (ARP2/3| complex 16 kDa subunit) (p16-ARC) Length = 150 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = -3 Query: 496 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLDT 323 ++++ L+Q AL+ AL+ P+ T+ + K +V + +++ + DI+ SLD Sbjct: 40 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 99 Query: 322 EYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILRSL 188 D+LMKY+Y+G + + L+ HEK G+G I+R L Sbjct: 100 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 144
>ARPC5_MOUSE (Q9CPW4) Actin-related protein 2/3 complex subunit 5 (ARP2/3| complex 16 kDa subunit) (p16-ARC) Length = 150 Score = 57.4 bits (137), Expect = 3e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = -3 Query: 496 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLDT 323 ++++ L+Q AL+ AL+ P+ T+ + K +V + +++ + DI+ SLD Sbjct: 40 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 99 Query: 322 EYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILRSL 188 D+LMKY+Y+G + + L+ HEK G+G I+R L Sbjct: 100 NGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVL 144
>ARPC5_SCHPO (Q10316) ARP2/3 complex 16 kDa subunit (p16-ARC)| Length = 152 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Frame = -3 Query: 550 ETDENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPL--KTRDERCKSANWIVVH 377 ET E ++A +S++ ++R + ++ ++ LKT L P ++ R + N V Sbjct: 27 ETAEQVQAAVSQLIPQAR---SAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDV 83 Query: 376 RAMMAIRDIDGMFNSLDTEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 197 + + DI TE D ++ ++YRGL+ L HEK+ E +G+GCI+ Sbjct: 84 LSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIV 143 Query: 196 RSL 188 R L Sbjct: 144 RVL 146
>ARPC5_CAEEL (P91167) Probable actin-related protein 2/3 complex subunit 5| (ARP2/3 complex 16 kDa subunit) (p16-ARC) Length = 146 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Frame = -3 Query: 499 RKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLD 326 +++ L+ ++ AL++ L P ++ K+ ++V + A R DI+ + L Sbjct: 34 QEVRQFLESNRLEYALQSVLLNPPFGHSEQELKNRAVLLVAEVIHAFRQTDIEESVHKLS 93 Query: 325 TEYYDILMKYLYRGLS-TGDRPTCDQCLKIHEKLTERAGLGCILRSLAD 182 E DILMKY+Y+ + D TC L H +L + G G I+R L++ Sbjct: 94 NENGDILMKYIYKAMQLCSDSATCLSLLLWHSQLVSKFGQGSIVRVLSN 142
>ARPC5_YEAST (P40518) ARP2/3 complex 16 kDa subunit (p16-ARC)| Length = 154 Score = 32.7 bits (73), Expect = 0.70 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Frame = -3 Query: 550 ETDENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRA 371 ET L+ L R+ Q R + T V+ L T P + D K + V A Sbjct: 30 ETTVTLQELQPRMNQL-RSLATSGDSLGAVQLLTT----DPPYSADAPTKEQYFKSVLEA 84 Query: 370 MMAIR--DIDGMFNSLDTEYYDILMKYLYRGLSTGD-RPTCDQCLKIHEKLTERAGLGCI 200 + +R DI + +L D+L+KYLY+G+S + L E++T+ +G+ I Sbjct: 85 LTQVRQADIGNVIKNLSDSQRDVLVKYLYKGMSVPQGQKQGGVLLAWLERITQVSGVTPI 144 Query: 199 LRSLAD 182 + ++D Sbjct: 145 VHYISD 150
>SAHH_RAT (P10760) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 431 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 484 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 383 ++ + P+ AL+ A+EG + T DE CK N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACKEGNIFV 272
>SAHH_MOUSE (P50247) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Liver copper-binding protein) (CUBP) Length = 431 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 484 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 383 ++ + P+ AL+ A+EG + T DE CK N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACKEGNIFV 272
>Y081_NPVOP (O10334) Hypothetical 24.9 kDa protein (ORF84)| Length = 218 Score = 30.8 bits (68), Expect = 2.7 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Frame = -3 Query: 466 PVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIRDIDGMFNSLDTEYYDILMKYLYR 287 P +AL L T R KS NW V++ D+E +L++YLY Sbjct: 8 PRKALSPTALNQNLATHRRRPKSKNWTSVNKI------------KYDSE---LLLQYLYE 52 Query: 286 GLSTGDRPTCD-QCLKIHEKLTERAGLGCILRSLADTVNTV*ASFVFIEG 140 G DRP D +K+++ ++ G + A + F F G Sbjct: 53 GFG-ADRPYSDINVIKVYKVKVKKTGASILAHYFAHVSTSTGYEFEFHPG 101
>SAHH_BACFR (Q64MT2) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 487 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -3 Query: 505 KSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIRDIDGM 341 +S L+ + P+ AL+ A+EG + T ++ CK N V + I ID M Sbjct: 289 RSYGARVLVTEVDPICALQAAMEGFEVVTMEDACKEGNIFVTTTGNIDIIRIDHM 343
>ALG44_PSESM (Q887Q0) Alginate biosynthesis protein alg44| Length = 390 Score = 30.0 bits (66), Expect = 4.5 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 475 QSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 Q KP E+L ++L G P++ +R S NW+ + +AM A Sbjct: 352 QIKPDESLSSSLAGRPVEVVSDRGPSVNWL-LDKAMAA 388
>SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohesin complex| Psm3 subunit) Length = 1194 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALE 437 E L++L +IE S + + ++K+ +EA KTALE Sbjct: 784 EALKSLSGQIENLSHEFDAIIKERAHIEARKTALE 818
>SH3K1_MOUSE (Q8R550) SH3-domain kinase-binding protein 1 (SH3-containing,| expressed in tumorigenic astrocytes) (Regulator of ubiquitous kinase) (Ruk) Length = 709 Score = 30.0 bits (66), Expect = 4.5 Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 17/115 (14%) Frame = +3 Query: 60 KRRGQQSPSAFIKSMQLIRPDKIFQHRP-----------------SMKTKEAHTVLTVSA 188 K G++ PS + S L PD P S KT + T+ VS Sbjct: 529 KATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKKTSKTVTISQVSD 588 Query: 189 SDRSMHPKPALSVSFSCILRHWSHVGRSPVDKPLYRYFMRMS*YSVSSELNMPSM 353 + S+ PKP + S S V SP+ L R S S+ S P M Sbjct: 589 NKTSLPPKPGTMAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSTEGKPKM 643
>SAHH_PIG (Q710C4) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 431 Score = 30.0 bits (66), Expect = 4.5 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -3 Query: 484 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 383 ++ + P+ AL+ A+EG + T DE C+ N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACQEGNIFV 272
>SAHH_HUMAN (P23526) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 431 Score = 30.0 bits (66), Expect = 4.5 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -3 Query: 484 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 383 ++ + P+ AL+ A+EG + T DE C+ N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACQEGNIFV 272
>CLPB_STAAW (Q8NXE7) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 361 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 269 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAS (Q6GAV1) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 361 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 269 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAR (Q6GIB2) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 361 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 269 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDSDRMIREVVTDEEIGD 542
>CLPB_STAAN (Q7A6G6) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 361 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 269 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAM (Q99VB5) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 361 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 269 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAC (Q5HHB0) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = -3 Query: 541 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 362 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 361 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 269 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>SAHH_RHOBA (Q7TTZ5) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 448 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 505 KSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 383 KS L+ + P+ AL+ A+EG + T +E CK V Sbjct: 238 KSYGCRVLVTEIDPINALQAAMEGFEVTTMEEACKEGRLYV 278
>TEAD3_CHICK (Q90701) Transcriptional enhancer factor TEF-5 (TEA domain family| member 3) (TEAD-3) (Cardiac-enriched TEA domain transcription factor 1) (DTEF-1) Length = 433 Score = 29.3 bits (64), Expect = 7.8 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = +3 Query: 51 QTAKRRGQQSPSAFIKSMQL--IRPDKIFQHRPSMKTKEAHTVLTVSASDRSMHPKPALS 224 Q RR S+ +K+M L + DK FQ SM + + +++ S + P P L Sbjct: 95 QVLARREISGDSSKLKAMNLDQVSKDKAFQSMASMSSAQ---IVSASVLQNKLSPPPPLP 151 Query: 225 VS-FSCILRHWS 257 + FS R WS Sbjct: 152 QAVFSAAPRFWS 163
>SYD_AERPE (Q9Y9U7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 442 Score = 29.3 bits (64), Expect = 7.8 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -3 Query: 496 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMM-AIRDIDGMFNSLDTE 320 K+E L S PVE L +EGS + R K W+ + M+ AI +++ M + + Sbjct: 93 KVERLEVLSTPVEPLPLEVEGSEKASLPTRLK-YRWLDIRNPMVSAIFELEAMVAKVFRD 151 Query: 319 YY 314 YY Sbjct: 152 YY 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,933,129 Number of Sequences: 219361 Number of extensions: 1342937 Number of successful extensions: 3775 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3775 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
