ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3e16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK063232.1| Oryza sativa (japonica cultivar-group) cDNA clon... 480 e-132
2gb|AY112210.1| Zea mays CL16630_1 mRNA sequence 210 4e-51
3gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 153 7e-34
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 153 7e-34
6gb|AF527808.1| Sorghum bicolor clone BAC SBTXS_0040L6 php200725 ... 54 5e-04
7ref|NM_116401.2| Arabidopsis thaliana CRK (CROOKED) AT4G01710 (C... 42 1.9
8ref|XM_366660.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 42 1.9
9gb|AY143806.1| Arabidopsis thaliana At4g01710/T15B16_22 mRNA, co... 42 1.9
10gb|AY052191.1| Arabidopsis thaliana AT4g01710/T15B16_22 mRNA, co... 42 1.9
11emb|BX829142.1|CNS0A4DP Arabidopsis thaliana Full-length cDNA Co... 42 1.9
12emb|BX828931.1|CNS0A2QL Arabidopsis thaliana Full-length cDNA Co... 42 1.9
13gb|AF267176.1|AF267176 Pyricularia grisea chromosome 7 clone BAC... 42 1.9
14gb|BC054794.1| Mus musculus cryptochrome 2 (photolyase-like), mR... 40 7.5
15gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 7.5
16ref|NM_009963.3| Mus musculus cryptochrome 2 (photolyase-like) (... 40 7.5
17ref|XM_994689.1| PREDICTED: Mus musculus cryptochrome 2 (photoly... 40 7.5
18gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosom... 40 7.5
19gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
20emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on ch... 40 7.5
21emb|BX058507.1|CNS09HB3 Single read from an extremity of a full-... 40 7.5
22emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome... 40 7.5
23emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 7.5
24gb|BC066799.1| Mus musculus cryptochrome 2 (photolyase-like), mR... 40 7.5
25gb|AC079935.3| Genomic sequence for Oryza sativa (japonica culti... 40 7.5
26dbj|AK133781.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 7.5
27dbj|AK041696.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 7.5
28dbj|AK053012.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 7.5
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
30dbj|AK172994.1| Mus musculus mRNA for mKIAA0658 protein 40 7.5
31gb|AC084630.1|CBRG45E13 Caenorhabditis briggsae cosmid G45E13, c... 40 7.5
32dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.5
33gb|AF156987.1|AF156987 Mus musculus cryptochrome 2 (Cry2) mRNA, ... 40 7.5
34gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
35dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.5
36emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on ch... 40 7.5
37dbj|AB003433.1| Mus musculus mRNA for photolyase/blue-light rece... 40 7.5 
>dbj|AK063232.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F06, full
           insert sequence
          Length = 751

 Score =  480 bits (242), Expect = e-132
 Identities = 347/382 (90%)
 Strand = Plus / Minus

                                                                       
Query: 163 ctcacacggtgttgacagtgtcggcgagtgaccgcagtatgcatcctaagcctgctctct 222
           ||||||||||||| || || || || ||||| |||| ||| ||||||||||||||| |||
Sbjct: 469 ctcacacggtgtttacggtatcagcaagtgagcgcaatatacatcctaagcctgctttct 410

                                                                       
Query: 223 ccgtcagcttctcatgtattttgaggcactggtcacacgtcggccggtcgccggtggaca 282
           | || || || ||||| |||||||||||||||||||| || ||||| || || || ||||
Sbjct: 409 cggtgagtttttcatgaattttgaggcactggtcacatgttggccgatcccctgttgaca 350

                                                                       
Query: 283 aacctctgtacaggtacttcatgaggatgtcatagtactcggtatccagtgagttgaaca 342
           |||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||
Sbjct: 349 aacctctgtacaggtacttcatcaggatgtcgtagtactcgggatccagcgagttgaaca 290

                                                                       
Query: 343 tgccatcgatgtccctgatcgccatcatggcgcggtgcaccacgatccagttcgccgact 402
           |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 289 tgccgtcgacgtccctgatcgccatcatcgcgcggtgcaccacgatccagttcgccgact 230

                                                                       
Query: 403 tgcatcgctcgtcgcgggtcttgaggggcgacccctccagcgccgtcttcagggcctcca 462
           |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 229 tgcatcgctcgtcgcgggtcttgaggggcgtcccctcgagcgccgtcttgagggcctcca 170

                                                                       
Query: 463 ccggcttcgactgcttgaggagggtctcgatcttgcgtgacttctgctcgatgcggctga 522
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||
Sbjct: 169 ccggcttcgactgcttgaggagggtctcgatcttgcgggacttctgctcgatgcgggaga 110

                                 
Query: 523 tgagggcctccaggttctcgtc 544
           ||| |||||| |||||||||||
Sbjct: 109 tgatggcctcgaggttctcgtc 88
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>gb|AY112210.1| Zea mays CL16630_1 mRNA sequence
          Length = 604

 Score =  210 bits (106), Expect = 4e-51
 Identities = 136/146 (93%)
 Strand = Plus / Minus

                                                                       
Query: 401 cttgcatcgctcgtcgcgggtcttgaggggcgacccctccagcgccgtcttcagggcctc 460
           ||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct: 225 cttgcatcgctcgtcgcgggtcttgagcggtgacccctcgagcgccgtctttagggcctc 166

                                                                       
Query: 461 caccggcttcgactgcttgaggagggtctcgatcttgcgtgacttctgctcgatgcggct 520
           ||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||| |
Sbjct: 165 caccggcttcgactgcttgagaagggtctcgatctttcgggacttctgctctatgcgggt 106

                                     
Query: 521 gatgagggcctccaggttctcgtccg 546
           ||||| ||||||||||||||||||||
Sbjct: 105 gatgatggcctccaggttctcgtccg 80



 Score =  137 bits (69), Expect = 4e-29
 Identities = 96/105 (91%)
 Strand = Plus / Minus

                                                                       
Query: 297 tacttcatgaggatgtcatagtactcggtatccagtgagttgaacatgccatcgatgtcc 356
           ||||||||||||||||| |||||||||| |||||| |||||||||||||| || | ||||
Sbjct: 345 tacttcatgaggatgtcgtagtactcgggatccagggagttgaacatgccgtctacgtcc 286

                                                        
Query: 357 ctgatcgccatcatggcgcggtgcaccacgatccagttcgccgac 401
           || ||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 285 ctaatcgccatcaacgcgcggtgcaccacgatccagttcgccgac 241
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0038B22, complete sequence
          Length = 177557

 Score =  153 bits (77), Expect = 7e-34
 Identities = 98/105 (93%)
 Strand = Plus / Minus

                                                                         
Query: 298   acttcatgaggatgtcatagtactcggtatccagtgagttgaacatgccatcgatgtccc 357
             ||||||| |||||||| |||||||||| |||||| |||||||||||||| |||| |||||
Sbjct: 77512 acttcatcaggatgtcgtagtactcgggatccagcgagttgaacatgccgtcgacgtccc 77453

                                                          
Query: 358   tgatcgccatcatggcgcggtgcaccacgatccagttcgccgact 402
             ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 77452 tgatcgccatcatcgcgcggtgcaccacgatccagttcgccgact 77408



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                         
Query: 401   cttgcatcgctcgtcgcgggtcttgaggggcgacccctccagcgccgtcttcagggcctc 460
             |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct: 77326 cttgcatcgctcgtcgcgggtcttgaggggcgtcccctcgagcgccgtcttgagggcctc 77267

                          
Query: 461   caccggcttcgac 473
             |||||||||||||
Sbjct: 77266 caccggcttcgac 77254



 Score =  113 bits (57), Expect = 6e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                         
Query: 163   ctcacacggtgttgacagtgtcggcgagtgaccgcagtatgcatcctaagcctgctctct 222
             ||||||||||||| || || || || ||||| |||| ||| ||||||||||||||| |||
Sbjct: 78705 ctcacacggtgtttacggtatcagcaagtgagcgcaatatacatcctaagcctgctttct 78646

                                                                         
Query: 223   ccgtcagcttctcatgtattttgaggcactggtcacacgtcggccggtcgccggtggaca 282
             | || || || ||||| |||||||||||||||||||| || ||||| || || || ||||
Sbjct: 78645 cggtgagtttttcatgaattttgaggcactggtcacatgttggccgatcccctgttgaca 78586

                              
Query: 283   aacctctgtacaggtac 299
             |||||||||||||||||
Sbjct: 78585 aacctctgtacaggtac 78569



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                         
Query: 472   actgcttgaggagggtctcgatcttgcgtgacttctgctcgatgcggctgatgagggcct 531
             |||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||
Sbjct: 77144 actgcttgaggagggtctcgatcttgcgggacttctgctcgatgcgggagatgatggcct 77085

                          
Query: 532   ccaggttctcgtc 544
             | |||||||||||
Sbjct: 77084 cgaggttctcgtc 77072
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  153 bits (77), Expect = 7e-34
 Identities = 98/105 (93%)
 Strand = Plus / Minus

                                                                            
Query: 298      acttcatgaggatgtcatagtactcggtatccagtgagttgaacatgccatcgatgtccc 357
                ||||||| |||||||| |||||||||| |||||| |||||||||||||| |||| |||||
Sbjct: 19900445 acttcatcaggatgtcgtagtactcgggatccagcgagttgaacatgccgtcgacgtccc 19900386

                                                             
Query: 358      tgatcgccatcatggcgcggtgcaccacgatccagttcgccgact 402
                ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19900385 tgatcgccatcatcgcgcggtgcaccacgatccagttcgccgact 19900341



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                            
Query: 401      cttgcatcgctcgtcgcgggtcttgaggggcgacccctccagcgccgtcttcagggcctc 460
                |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct: 19900259 cttgcatcgctcgtcgcgggtcttgaggggcgtcccctcgagcgccgtcttgagggcctc 19900200

                             
Query: 461      caccggcttcgac 473
                |||||||||||||
Sbjct: 19900199 caccggcttcgac 19900187



 Score =  113 bits (57), Expect = 6e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                            
Query: 163      ctcacacggtgttgacagtgtcggcgagtgaccgcagtatgcatcctaagcctgctctct 222
                ||||||||||||| || || || || ||||| |||| ||| ||||||||||||||| |||
Sbjct: 19901638 ctcacacggtgtttacggtatcagcaagtgagcgcaatatacatcctaagcctgctttct 19901579

                                                                            
Query: 223      ccgtcagcttctcatgtattttgaggcactggtcacacgtcggccggtcgccggtggaca 282
                | || || || ||||| |||||||||||||||||||| || ||||| || || || ||||
Sbjct: 19901578 cggtgagtttttcatgaattttgaggcactggtcacatgttggccgatcccctgttgaca 19901519

                                 
Query: 283      aacctctgtacaggtac 299
                |||||||||||||||||
Sbjct: 19901518 aacctctgtacaggtac 19901502



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                            
Query: 472      actgcttgaggagggtctcgatcttgcgtgacttctgctcgatgcggctgatgagggcct 531
                |||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||
Sbjct: 19900077 actgcttgaggagggtctcgatcttgcgggacttctgctcgatgcgggagatgatggcct 19900018

                             
Query: 532      ccaggttctcgtc 544
                | |||||||||||
Sbjct: 19900017 cgaggttctcgtc 19900005
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  153 bits (77), Expect = 7e-34
 Identities = 98/105 (93%)
 Strand = Plus / Minus

                                                                            
Query: 298      acttcatgaggatgtcatagtactcggtatccagtgagttgaacatgccatcgatgtccc 357
                ||||||| |||||||| |||||||||| |||||| |||||||||||||| |||| |||||
Sbjct: 20185424 acttcatcaggatgtcgtagtactcgggatccagcgagttgaacatgccgtcgacgtccc 20185365

                                                             
Query: 358      tgatcgccatcatggcgcggtgcaccacgatccagttcgccgact 402
                ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 20185364 tgatcgccatcatcgcgcggtgcaccacgatccagttcgccgact 20185320



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                            
Query: 401      cttgcatcgctcgtcgcgggtcttgaggggcgacccctccagcgccgtcttcagggcctc 460
                |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct: 20185238 cttgcatcgctcgtcgcgggtcttgaggggcgtcccctcgagcgccgtcttgagggcctc 20185179

                             
Query: 461      caccggcttcgac 473
                |||||||||||||
Sbjct: 20185178 caccggcttcgac 20185166



 Score =  113 bits (57), Expect = 6e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                            
Query: 163      ctcacacggtgttgacagtgtcggcgagtgaccgcagtatgcatcctaagcctgctctct 222
                ||||||||||||| || || || || ||||| |||| ||| ||||||||||||||| |||
Sbjct: 20186617 ctcacacggtgtttacggtatcagcaagtgagcgcaatatacatcctaagcctgctttct 20186558

                                                                            
Query: 223      ccgtcagcttctcatgtattttgaggcactggtcacacgtcggccggtcgccggtggaca 282
                | || || || ||||| |||||||||||||||||||| || ||||| || || || ||||
Sbjct: 20186557 cggtgagtttttcatgaattttgaggcactggtcacatgttggccgatcccctgttgaca 20186498

                                 
Query: 283      aacctctgtacaggtac 299
                |||||||||||||||||
Sbjct: 20186497 aacctctgtacaggtac 20186481



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                            
Query: 472      actgcttgaggagggtctcgatcttgcgtgacttctgctcgatgcggctgatgagggcct 531
                |||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||
Sbjct: 20185056 actgcttgaggagggtctcgatcttgcgggacttctgctcgatgcgggagatgatggcct 20184997

                             
Query: 532      ccaggttctcgtc 544
                | |||||||||||
Sbjct: 20184996 cgaggttctcgtc 20184984
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>gb|AF527808.1| Sorghum bicolor clone BAC SBTXS_0040L6 php200725 orthologous region
          Length = 90923

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                
Query: 297   tacttcatgaggatgtcatagtactc-ggtatccagtgagttgaacatgcc 346
             ||||| |||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 48788 tactttatgaggatgtcatagtactcagggatccagagaattgaacatgcc 48738



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 60/71 (84%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                         
Query: 402   ttgcatcgctcgtcgcgggtcttgaggggcgacccctccagcgccgtctt--cagggcct 459
             ||||||||||||||| |||||| |||  |||||||||| || ||||| ||  || |||||
Sbjct: 48627 ttgcatcgctcgtcgtgggtctggagcagcgacccctcgagtgccgtttttccaaggcct 48568

                        
Query: 460   ccaccggcttc 470
             |||| ||||||
Sbjct: 48567 ccactggcttc 48557



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 480   aggagggtctcgatcttgcgtgacttctgctcgatgcggctgatga 525
             |||| |||||||||||| || |||||||| | ||||||| ||||||
Sbjct: 48473 aggaaggtctcgatctttcgagacttctgttagatgcgggtgatga 48428
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>ref|NM_116401.2| Arabidopsis thaliana CRK (CROOKED) AT4G01710 (CRK) mRNA, complete
           cds
          Length = 576

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 285 cctctgtacaggtacttcatgaggatgtc 313
           |||||||||| |||||||||||| |||||
Sbjct: 301 cctctgtacaagtacttcatgagaatgtc 273
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>ref|XM_366660.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG02736.4) partial mRNA
          Length = 753

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 170 ggtgttgacagtgtcggcgag 190
           |||||||||||||||||||||
Sbjct: 63  ggtgttgacagtgtcggcgag 43
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>gb|AY143806.1| Arabidopsis thaliana At4g01710/T15B16_22 mRNA, complete cds
          Length = 399

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 285 cctctgtacaggtacttcatgaggatgtc 313
           |||||||||| |||||||||||| |||||
Sbjct: 278 cctctgtacaagtacttcatgagaatgtc 250
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>gb|AY052191.1| Arabidopsis thaliana AT4g01710/T15B16_22 mRNA, complete cds
          Length = 516

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 285 cctctgtacaggtacttcatgaggatgtc 313
           |||||||||| |||||||||||| |||||
Sbjct: 301 cctctgtacaagtacttcatgagaatgtc 273
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>emb|BX829142.1|CNS0A4DP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL75ZC11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 543

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 285 cctctgtacaggtacttcatgaggatgtc 313
           |||||||||| |||||||||||| |||||
Sbjct: 265 cctctgtacaagtacttcatgagaatgtc 237
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>emb|BX828931.1|CNS0A2QL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL52ZB11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 508

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 285 cctctgtacaggtacttcatgaggatgtc 313
           |||||||||| |||||||||||| |||||
Sbjct: 281 cctctgtacaagtacttcatgagaatgtc 253
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>gb|AF267176.1|AF267176 Pyricularia grisea chromosome 7 clone BAC 6J18, genomic sequence
          Length = 111865

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 170    ggtgttgacagtgtcggcgag 190
              |||||||||||||||||||||
Sbjct: 106565 ggtgttgacagtgtcggcgag 106585
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>gb|BC054794.1| Mus musculus cryptochrome 2 (photolyase-like), mRNA (cDNA clone
           MGC:65642 IMAGE:6834104), complete cds
          Length = 3975

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 540 gctccatgcggctgatgagggcct 517
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 260     cgtcggccggtcgccggtggacaa 283
               ||||||| ||||||||||||||||
Sbjct: 2534181 cgtcggctggtcgccggtggacaa 2534204
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>ref|NM_009963.3| Mus musculus cryptochrome 2 (photolyase-like) (Cry2), mRNA
          Length = 3970

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 543 gctccatgcggctgatgagggcct 520
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>ref|XM_994689.1| PREDICTED: Mus musculus cryptochrome 2 (photolyase-like),
           transcript variant 5 (Cry2), mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 584 gctccatgcggctgatgagggcct 561
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>gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosome 7, complete sequence
          Length = 205352

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    catgtattttgaggcactgg 254
              ||||||||||||||||||||
Sbjct: 104384 catgtattttgaggcactgg 104403
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>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06,
             complete sequence
          Length = 135774

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ccctcaatgaaaacgaagga 160
             ||||||||||||||||||||
Sbjct: 15790 ccctcaatgaaaacgaagga 15809
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>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two
             novel genes (FLJ36774) and five CpG islands, complete
             sequence
          Length = 158335

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tcatgtattttgaggcactg 253
             ||||||||||||||||||||
Sbjct: 45378 tcatgtattttgaggcactg 45397
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>emb|BX058507.1|CNS09HB3 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC38DG09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 606

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 362 cgccatcatggcgcggtgca 381
           ||||||||||||||||||||
Sbjct: 589 cgccatcatggcgcggtgca 570
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>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13
          Length = 348247

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 260    cgtcggccggtcgccggtggacaa 283
              ||||||| ||||||||||||||||
Sbjct: 112138 cgtcggctggtcgccggtggacaa 112161
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>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
            9/14
          Length = 306550

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 260  cgtcggccggtcgccggtggacaa 283
            ||||||| ||||||||||||||||
Sbjct: 4931 cgtcggctggtcgccggtggacaa 4954
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>gb|BC066799.1| Mus musculus cryptochrome 2 (photolyase-like), mRNA (cDNA clone
           MGC:76472 IMAGE:30103169), complete cds
          Length = 3970

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 543 gctccatgcggctgatgagggcct 520
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>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare clone OSJNBa0095C06, from Chromosome 10,
              complete sequence
          Length = 156159

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    ccctcaatgaaaacgaagga 160
              ||||||||||||||||||||
Sbjct: 145848 ccctcaatgaaaacgaagga 145867
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>dbj|AK133781.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730412K01 product:cryptochrome
           2 (photolyase-like), full insert sequence
          Length = 3984

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 559 gctccatgcggctgatgagggcct 536
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>dbj|AK041696.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630030K06 product:cryptochrome 2
           (photolyase-like), full insert sequence
          Length = 2162

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 552 gctccatgcggctgatgagggcct 529
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>dbj|AK053012.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930015M05 product:unclassifiable, full
           insert sequence
          Length = 1191

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 903 gctccatgcggctgatgagggcct 926
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 141      ccctcaatgaaaacgaagga 160
                ||||||||||||||||||||
Sbjct: 11561855 ccctcaatgaaaacgaagga 11561874
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>dbj|AK172994.1| Mus musculus mRNA for mKIAA0658 protein
          Length = 3930

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 516 gctccatgcggctgatgagggcct 493
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>gb|AC084630.1|CBRG45E13 Caenorhabditis briggsae cosmid G45E13, complete sequence
          Length = 39246

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  gagaagaggtcaacaatcac 81
           ||||||||||||||||||||
Sbjct: 741 gagaagaggtcaacaatcac 722
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 482    gagggtctcgatcttgcgtgactt 505
              |||||| |||||||||||||||||
Sbjct: 681435 gagggtgtcgatcttgcgtgactt 681458
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>gb|AF156987.1|AF156987 Mus musculus cryptochrome 2 (Cry2) mRNA, complete cds
          Length = 1793

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 552 gctccatgcggctgatgagggcct 529
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 141      ccctcaatgaaaacgaagga 160
                ||||||||||||||||||||
Sbjct: 11568295 ccctcaatgaaaacgaagga 11568314
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     cggccggtcgccggtggaca 282
               ||||||||||||||||||||
Sbjct: 3378130 cggccggtcgccggtggaca 3378111
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>emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on chromosome 2, complete
              sequence
          Length = 211034

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 508    gctcgatgcggctgatgagggcct 531
              |||| |||||||||||||||||||
Sbjct: 204767 gctccatgcggctgatgagggcct 204790
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>dbj|AB003433.1| Mus musculus mRNA for photolyase/blue-light receptor homolog2,
           partial cds
          Length = 1710

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 508 gctcgatgcggctgatgagggcct 531
           |||| |||||||||||||||||||
Sbjct: 469 gctccatgcggctgatgagggcct 446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,863,768
Number of Sequences: 3902068
Number of extensions: 3863768
Number of successful extensions: 67699
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67451
Number of HSP's gapped (non-prelim): 248
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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