Clone Name | rbasd2p07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197804.1| Oryza sativa (japonica cultivar-group) putative chlorophyll synthase (OSJNBa0057L21.2), mRNA Length = 2207 Score = 210 bits (106), Expect = 5e-51 Identities = 265/318 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 1666 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 1607 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 1606 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 1547 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 1546 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 1487 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 1486 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 1427 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 1426 agcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 1367 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 1366 gatatggagctggtggag 1349 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1973 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 1914 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 1913 acttaaaattacaca 1899
>dbj|AK071899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059G06, full insert sequence Length = 2088 Score = 210 bits (106), Expect = 5e-51 Identities = 265/318 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 1686 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 1627 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 1626 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 1567 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 1566 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 1507 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 1506 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 1447 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 1446 agcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 1387 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 1386 gatatggagctggtggag 1369 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1993 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 1934 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 1933 acttaaaattacaca 1919
>dbj|AK067730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116K15, full insert sequence Length = 2540 Score = 210 bits (106), Expect = 5e-51 Identities = 265/318 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 2089 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 2030 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 2029 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 1970 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 1969 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 1910 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 1909 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 1850 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 1849 agcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 1790 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 1789 gatatggagctggtggag 1772 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 2395 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 2336 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 2335 acttaaaattacaca 2321
>dbj|AK065124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P04, full insert sequence Length = 2090 Score = 210 bits (106), Expect = 5e-51 Identities = 265/318 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 1687 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 1628 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 1627 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 1568 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 1567 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 1508 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 1507 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 1448 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 1447 agcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 1388 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 1387 gatatggagctggtggag 1370 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1994 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 1935 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 1934 acttaaaattacaca 1920
>dbj|AB021310.1| Oryza sativa CAO mRNA for chlorophyll b synthase, partial cds Length = 1472 Score = 210 bits (106), Expect = 5e-51 Identities = 265/318 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 1072 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 1013 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 1012 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 953 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 952 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 893 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 892 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 833 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 832 agcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 773 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 772 gatatggagctggtggag 755 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1378 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 1319 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 1318 acttaaaattacaca 1304
>dbj|AK062219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B05, full insert sequence Length = 1415 Score = 202 bits (102), Expect = 1e-48 Identities = 264/318 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 992 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 933 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 932 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 873 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 872 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 813 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 812 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 753 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||| ||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 752 agcgaagccgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 693 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 692 gatatggagctggtggag 675 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1299 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 1240 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 1239 acttaaaattacaca 1225
>ref|NM_197802.1| Oryza sativa (japonica cultivar-group) putative chlorophyll synthase (OSJNBa0057L21.9), mRNA Length = 1560 Score = 186 bits (94), Expect = 7e-44 Identities = 214/254 (84%) Strand = Plus / Minus Query: 427 ctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaacgtta 486 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct: 1496 ctccataaccgataccggataccaagcttgtcatatgacactggccagttccatacgttc 1437 Query: 487 gctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaagacc 546 || ||||| |||| || ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 1436 gcgccatttatcatccgctcttgctgcccaagcacaagccgtaggtcctcattcaagacc 1377 Query: 547 ttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggtgcg 606 |||||| | ||||||||||| | | |||||||||||| |||||||| | |||||| || Sbjct: 1376 ttctcaccaaaatgtgaccatagtatgtgcatgaaagggatgtgcttgagccagggagca 1317 Query: 607 aagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcataca 666 |||| ||| |||||| | |||| | ||||||||||||| | || || |||||||| | | Sbjct: 1316 aagttgagggacatctggtacagcatcctggttttattcctggaggagggcaagcagata 1257 Query: 667 tggagctggtggag 680 ||||| |||||||| Sbjct: 1256 tggagttggtggag 1243
>dbj|AK063367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D11, full insert sequence Length = 1949 Score = 186 bits (94), Expect = 7e-44 Identities = 214/254 (84%) Strand = Plus / Minus Query: 427 ctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaacgtta 486 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct: 1579 ctccataaccgataccggataccaagcttgtcatatgacactggccagttccatacgttc 1520 Query: 487 gctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaagacc 546 || ||||| |||| || ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 1519 gcgccatttatcatccgctcttgctgcccaagcacaagccgtaggtcctcattcaagacc 1460 Query: 547 ttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggtgcg 606 |||||| | ||||||||||| | | |||||||||||| |||||||| | |||||| || Sbjct: 1459 ttctcaccaaaatgtgaccatagtatgtgcatgaaagggatgtgcttgagccagggagca 1400 Query: 607 aagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcataca 666 |||| ||| |||||| | |||| | ||||||||||||| | || || |||||||| | | Sbjct: 1399 aagttgagggacatctggtacagcatcctggttttattcctggaggagggcaagcagata 1340 Query: 667 tggagctggtggag 680 ||||| |||||||| Sbjct: 1339 tggagttggtggag 1326
>gb|AF284781.1|AF284781 Oryza sativa LLS1 protein (Lls1) mRNA, complete cds Length = 2138 Score = 163 bits (82), Expect = 1e-36 Identities = 262/318 (82%), Gaps = 3/318 (0%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 1722 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 1663 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || |||||| |||| || |||||||||||||| || Sbjct: 1662 gtctctccacaaccgataccggataccaagcttg-catatgatactggccagttccagac 1604 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| || || |||||| || |||||||| | || |||||||||||||| Sbjct: 1603 atttgcgccattg-aca-tccgtcttgctgcccgagcacgactcgaagatcctcattcaa 1546 Query: 543 gaccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccaggg 602 |||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 1545 gaccttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgg 1486 Query: 603 tgcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagca 662 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 1485 agcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaaca 1426 Query: 663 tacatggagctggtggag 680 | ||||||||||||||| Sbjct: 1425 gatatggagctggtggag 1408 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 2029 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 1970 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 1969 acttaaaattacaca 1955
>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence Length = 183046 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Minus Query: 427 ctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaacgtta 486 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct: 53957 ctccataaccgataccggataccaagcttgtcatatgacactggccagttccatacgttc 53898 Query: 487 gctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaagacc 546 || ||||| |||| || ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 53897 gcgccatttatcatccgctcttgctgcccaagcacaagccgtaggtcctcattcaagacc 53838 Query: 547 t 547 | Sbjct: 53837 t 53837 Score = 121 bits (61), Expect = 3e-24 Identities = 154/185 (83%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 44567 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 44508 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 44507 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 44448 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 44447 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 44388 Query: 543 gacct 547 ||||| Sbjct: 44387 gacct 44383 Score = 97.6 bits (49), Expect = 5e-17 Identities = 115/137 (83%) Strand = Plus / Minus Query: 544 accttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggt 603 ||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 44234 accttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgga 44175 Query: 604 gcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcat 663 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 44174 gcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaacag 44115 Query: 664 acatggagctggtggag 680 | ||||||||||||||| Sbjct: 44114 atatggagctggtggag 44098 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 44874 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 44815 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 44814 acttaaaattacaca 44800 Score = 71.9 bits (36), Expect = 3e-09 Identities = 111/136 (81%) Strand = Plus / Minus Query: 545 ccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggtg 604 |||||||| | ||||||||||| | | |||||||||||| |||||||| | |||||| | Sbjct: 53689 ccttctcaccaaaatgtgaccatagtatgtgcatgaaagggatgtgcttgagccagggag 53630 Query: 605 cgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcata 664 | |||| ||| |||||| | |||| | ||||||||||||| | || || |||||||| | Sbjct: 53629 caaagttgagggacatctggtacagcatcctggttttattcctggaggagggcaagcaga 53570 Query: 665 catggagctggtggag 680 |||||| |||||||| Sbjct: 53569 tatggagttggtggag 53554
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 121 bits (61), Expect = 3e-24 Identities = 154/185 (83%) Strand = Plus / Plus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 21963754 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 21963813 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 21963814 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 21963873 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 21963874 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 21963933 Query: 543 gacct 547 ||||| Sbjct: 21963934 gacct 21963938 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 427 ctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaacgtta 486 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct: 21954364 ctccataaccgataccggataccaagcttgtcatatgacactggccagttccatacgttc 21954423 Query: 487 gctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaagacc 546 || ||||| |||| || ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 21954424 gcgccatttatcatccgctcttgctgcccaagcacaagccgtaggtcctcattcaagacc 21954483 Query: 547 t 547 | Sbjct: 21954484 t 21954484 Score = 97.6 bits (49), Expect = 5e-17 Identities = 115/137 (83%) Strand = Plus / Plus Query: 544 accttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggt 603 ||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 21964087 accttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgga 21964146 Query: 604 gcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcat 663 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 21964147 gcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaacag 21964206 Query: 664 acatggagctggtggag 680 | ||||||||||||||| Sbjct: 21964207 atatggagctggtggag 21964223 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 21963447 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 21963506 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 21963507 acttaaaattacaca 21963521 Score = 71.9 bits (36), Expect = 3e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 545 ccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggtg 604 |||||||| | ||||||||||| | | |||||||||||| |||||||| | |||||| | Sbjct: 21954632 ccttctcaccaaaatgtgaccatagtatgtgcatgaaagggatgtgcttgagccagggag 21954691 Query: 605 cgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcata 664 | |||| ||| |||||| | |||| | ||||||||||||| | || || |||||||| | Sbjct: 21954692 caaagttgagggacatctggtacagcatcctggttttattcctggaggagggcaagcaga 21954751 Query: 665 catggagctggtggag 680 |||||| |||||||| Sbjct: 21954752 tatggagttggtggag 21954767
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 121 bits (61), Expect = 3e-24 Identities = 154/185 (83%) Strand = Plus / Plus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| ||| ||| ||||| || |||| || || |||||||| | || Sbjct: 21975417 ctatgatccactctcactttggttactgaatggcaacctgtctactcccctctcaatggc 21975476 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct: 21975477 gtctctccacaaccgataccggataccaagcttgtcatatgatactggccagttccagac 21975536 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 || || |||||| |||| || ||||| || |||||||| || || |||||||||||||| Sbjct: 21975537 atttgcgccattgatcatccgttcttgctgcccgagcacgagtcgaagatcctcattcaa 21975596 Query: 543 gacct 547 ||||| Sbjct: 21975597 gacct 21975601 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 427 ctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaacgtta 486 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct: 21966027 ctccataaccgataccggataccaagcttgtcatatgacactggccagttccatacgttc 21966086 Query: 487 gctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaagacc 546 || ||||| |||| || ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 21966087 gcgccatttatcatccgctcttgctgcccaagcacaagccgtaggtcctcattcaagacc 21966146 Query: 547 t 547 | Sbjct: 21966147 t 21966147 Score = 97.6 bits (49), Expect = 5e-17 Identities = 115/137 (83%) Strand = Plus / Plus Query: 544 accttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggt 603 ||||||||||| ||||||||||| | | ||||||||||| | ||||| ||||| || Sbjct: 21975750 accttctcagcaaaatgtgaccatagtatatgcatgaaagggacatgcttgatccatgga 21975809 Query: 604 gcgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcat 663 |||||||||||||||||||| || | ||||||||||||||| |||| || ||||| || Sbjct: 21975810 gcgaagtcgagagacatccggtagagcagcctggttttattcctagaggagggcaaacag 21975869 Query: 664 acatggagctggtggag 680 | ||||||||||||||| Sbjct: 21975870 atatggagctggtggag 21975886 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 89 gaagaaaagcaaatcaacctcagattacaattgcatcagttgatgctgccgctagtgtac 148 |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 21975110 gaagaaaaacaaatcaacctcagattacaattgcatcccgtgatgctgtcgctagtgtac 21975169 Query: 149 aattaacaatacaca 163 | |||| | |||||| Sbjct: 21975170 acttaaaattacaca 21975184 Score = 71.9 bits (36), Expect = 3e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 545 ccttctcagcgaaatgtgaccacaagaggtgcatgaaaggcatgtgcttcatccagggtg 604 |||||||| | ||||||||||| | | |||||||||||| |||||||| | |||||| | Sbjct: 21966295 ccttctcaccaaaatgtgaccatagtatgtgcatgaaagggatgtgcttgagccagggag 21966354 Query: 605 cgaagtcgagagacatccgatacaagagcctggttttattcgtagatgaaggcaagcata 664 | |||| ||| |||||| | |||| | ||||||||||||| | || || |||||||| | Sbjct: 21966355 caaagttgagggacatctggtacagcatcctggttttattcctggaggagggcaagcaga 21966414 Query: 665 catggagctggtggag 680 |||||| |||||||| Sbjct: 21966415 tatggagttggtggag 21966430
>gb|AY107343.1| Zea mays PCO079065 mRNA sequence Length = 568 Score = 97.6 bits (49), Expect = 5e-17 Identities = 154/189 (81%) Strand = Plus / Minus Query: 363 ctatgatccactctcaatttcgttgctgaacggtaaccgatcgacgcccctctcgactgc 422 |||||||||||||||| || ||| ||||| || ||||| || ||||||||| || | Sbjct: 192 ctatgatccactctcagcttggttactgaatggcaaccgttcagagcccctctcaacggt 133 Query: 423 atccctccataaccgataccggatgccgagcttgtcatacgacactggccagttccaaac 482 || ||||| ||||| ||||||| |||||||||||||| || || ||||||||||| || Sbjct: 132 gtctctccacaaccggtaccggaccccgagcttgtcatatgataccggccagttccagac 73 Query: 483 gttagctccattgttcattcggtcttgttggccgagcacaagccgcagatcctcattcaa 542 ||| || |||||| |||| || ||||| || || || |||||||| || ||||| ||||| Sbjct: 72 gttggcgccattgatcatccgttcttgctgaccaagaacaagccgtaggtcctcgttcaa 13 Query: 543 gaccttctc 551 ||||||||| Sbjct: 12 gaccttctc 4 Score = 50.1 bits (25), Expect = 0.010 Identities = 25/25 (100%) Strand = Plus / Minus Query: 101 atcaacctcagattacaattgcatc 125 ||||||||||||||||||||||||| Sbjct: 418 atcaacctcagattacaattgcatc 394
>dbj|AK100517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100H07, full insert sequence Length = 2983 Score = 63.9 bits (32), Expect = 7e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 573 gtgcatgaaaggcatgtgcttcatccagggtgcgaagtcgagagacatccgatacaagag 632 |||||||||||| |||||||| | |||||| || |||| ||| |||||| | |||| | Sbjct: 5 gtgcatgaaagggatgtgcttgagccagggagcaaagttgagggacatctggtacagcat 64 Query: 633 cctggttttattcgtagatgaaggcaagcatacatggagctggtggag 680 ||||||||||||| | || || |||||||| | |||||| |||||||| Sbjct: 65 cctggttttattcctggaggagggcaagcagatatggagttggtggag 112
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 aagaaaagcaaatcaacctca 110 ||||||||||||||||||||| Sbjct: 965080 aagaaaagcaaatcaacctca 965060
>gb|AF517575.1| Streptococcus thermophilus strain NST2280 eps locus, partial sequence Length = 5284 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 aagaaaagcaaatcaacctca 110 ||||||||||||||||||||| Sbjct: 2325 aagaaaagcaaatcaacctca 2345
>gb|AF430847.1| Streptococcus thermophilus strain MTC330 exopolysaccharide synthesis gene cluster, complete sequence Length = 23165 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 aagaaaagcaaatcaacctca 110 ||||||||||||||||||||| Sbjct: 15799 aagaaaagcaaatcaacctca 15819
>gb|AF434993.1| Streptococcus thermophilus strain MTC360 exopolysaccharide synthesis gene cluster, complete sequence Length = 23178 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 aagaaaagcaaatcaacctca 110 ||||||||||||||||||||| Sbjct: 15812 aagaaaagcaaatcaacctca 15832
>gb|AY061649.1| Streptococcus thermophilus strain MR-2C exopolysaccharide synthesis gene cluster, complete sequence Length = 23166 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 aagaaaagcaaatcaacctca 110 ||||||||||||||||||||| Sbjct: 15800 aagaaaagcaaatcaacctca 15820
>gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OABb-419P24, complete sequence Length = 163751 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 acaattaacaatacacaattg 167 ||||||||||||||||||||| Sbjct: 135564 acaattaacaatacacaattg 135584
>gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosome unknown, complete sequence Length = 216402 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 aagaaaagcaaatcaacctcagatt 114 |||||||||||||| |||||||||| Sbjct: 142756 aagaaaagcaaatctacctcagatt 142732
>gb|AC145947.3| Gallus gallus BAC clone CH261-24O5 from chromosome unknown, complete sequence Length = 233033 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 aagaaaagcaaatcaacctcagatt 114 |||||||||||||| |||||||||| Sbjct: 43946 aagaaaagcaaatctacctcagatt 43970
>ref|XM_637943.1| Dictyostelium discoideum hypothetical protein (DDB0202956), partial mRNA Length = 6354 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tacaattgcatcagttgatg 133 |||||||||||||||||||| Sbjct: 513 tacaattgcatcagttgatg 494
>gb|AC133950.4| Mus musculus BAC clone RP24-243C16 from chromosome 7, complete sequence Length = 176244 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 agagaaagtgactacaggtg 347 |||||||||||||||||||| Sbjct: 79061 agagaaagtgactacaggtg 79080
>emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 in linkage group 11, complete sequence Length = 140484 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cacagggctacgtttccaga 212 |||||||||||||||||||| Sbjct: 37164 cacagggctacgtttccaga 37183
>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence Length = 38345 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tctcaatttcgttgctgaac 393 |||||||||||||||||||| Sbjct: 15450 tctcaatttcgttgctgaac 15469
>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence Length = 127132 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agtgtacaattaacaataca 161 |||||||||||||||||||| Sbjct: 37068 agtgtacaattaacaataca 37087
>emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in linkage group 16, complete sequence Length = 170291 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cacagggctacgtttccaga 212 |||||||||||||||||||| Sbjct: 58818 cacagggctacgtttccaga 58799
>emb|CR735104.7| Zebrafish DNA sequence from clone DKEYP-72G9 in linkage group 21, complete sequence Length = 190684 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tactttacatgaatgaaggg 73 |||||||||||||||||||| Sbjct: 100374 tactttacatgaatgaaggg 100355
>emb|AL954323.5| Zebrafish DNA sequence from clone CH211-285C6 in linkage group 20 Contains two novel genes, the gene for a novel protein similar to vertebrate NIMA (never in mitosis gene a)-related expressed kinase (NEK1), the gene for a novel protein similar to vertebrate NIMA (never in mitosis gene a)-related expressed kinase family and three CpG islands, complete sequence Length = 165873 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ttatgtacgctttgacagta 42 |||||||||||||||||||| Sbjct: 31110 ttatgtacgctttgacagta 31129
>gb|AC087236.11| Homo sapiens 12 BAC RP11-127B1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 61010 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 48 ggaagatactttacatgaatgaagggag 75 |||||||||||||| | ||||||||||| Sbjct: 36466 ggaagatactttacttaaatgaagggag 36493
>gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, complete sequence Length = 185255 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctttgacagtaacattggaa 51 |||||||||||||||||||| Sbjct: 170686 ctttgacagtaacattggaa 170705
>gb|AC008378.6| Homo sapiens chromosome 5 clone CTC-209H22, complete sequence Length = 161267 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 catgaatgaagggaggggga 80 |||||||||||||||||||| Sbjct: 3712 catgaatgaagggaggggga 3693
>emb|BX571694.10| Zebrafish DNA sequence from clone CH211-159E21 in linkage group 10, complete sequence Length = 163542 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cacagggctacgtttccaga 212 |||||||||||||||||||| Sbjct: 97970 cacagggctacgtttccaga 97989
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ttttcctatgatccactctcaatt 381 |||||||||||||| ||||||||| Sbjct: 19911664 ttttcctatgatccgctctcaatt 19911641
>gb|AC008412.8| Homo sapiens chromosome 5 clone CTC-281H14, complete sequence Length = 81512 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 catgaatgaagggaggggga 80 |||||||||||||||||||| Sbjct: 732 catgaatgaagggaggggga 751
>gb|AC124356.4| Mus musculus BAC clone RP24-484D12 from chromosome 12, complete sequence Length = 161982 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tctggctgccattgccaagc 313 |||||||||||||||||||| Sbjct: 71170 tctggctgccattgccaagc 71151
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ttttcctatgatccactctcaatt 381 |||||||||||||| ||||||||| Sbjct: 79842 ttttcctatgatccgctctcaatt 79819
>dbj|AB089381.1| Paprika mild mottle virus complete genome, strain:Japanese Length = 6524 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 acgagagaaagtgactacag 344 |||||||||||||||||||| Sbjct: 5451 acgagagaaagtgactacag 5470
>emb|CR931793.8| Zebrafish DNA sequence from clone CH73-335D12 in linkage group 20, complete sequence Length = 32299 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aaaagcaaatcaacctcaga 112 |||||||||||||||||||| Sbjct: 7600 aaaagcaaatcaacctcaga 7581
>emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-813I20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 216647 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggagcatgctggtgtcacac 20 |||||||||||||||||||| Sbjct: 11372 ggagcatgctggtgtcacac 11353
>emb|AL954316.5| Zebrafish DNA sequence from clone BUSM1-254P9 in linkage group 1, complete sequence Length = 115475 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cacagggctacgtttccaga 212 |||||||||||||||||||| Sbjct: 83991 cacagggctacgtttccaga 84010
>emb|BX248089.5| Zebrafish DNA sequence from clone DKEY-21K10 in linkage group 20, complete sequence Length = 247834 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cacagggctacgtttccaga 212 |||||||||||||||||||| Sbjct: 50920 cacagggctacgtttccaga 50939
>emb|AL669924.9| Human DNA sequence from clone XXbac-2L19 on chromosome 6, complete sequence Length = 137345 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 catgaatgaagggaggggga 80 |||||||||||||||||||| Sbjct: 991 catgaatgaagggaggggga 1010
>emb|AL669821.9| Human DNA sequence from clone XXbac-116A1 on chromosome 6, complete sequence Length = 89211 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 catgaatgaagggaggggga 80 |||||||||||||||||||| Sbjct: 1010 catgaatgaagggaggggga 991 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,208,721 Number of Sequences: 3902068 Number of extensions: 5208721 Number of successful extensions: 89690 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89527 Number of HSP's gapped (non-prelim): 151 length of query: 707 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 684 effective length of database: 17,143,297,704 effective search space: 11726015629536 effective search space used: 11726015629536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)