ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 177 2e-44
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 121 8e-28
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 119 4e-27
4DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme... 36 0.055
5DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme... 34 0.21
6DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 33 0.27
7DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme... 33 0.46
8SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 6.7

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  177 bits (448), Expect = 2e-44
 Identities = 87/96 (90%), Positives = 91/96 (94%), Gaps = 2/96 (2%)
 Frame = -1

Query: 463 GHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284
           GHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  EN
Sbjct: 300 GHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--EN 357

Query: 283 VESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 182
           VESGHPLVKEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 358 VESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  121 bits (304), Expect = 8e-28
 Identities = 59/88 (67%), Positives = 70/88 (79%)
 Frame = -1

Query: 463 GHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284
           GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN
Sbjct: 307 GHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAEN 366

Query: 283 VESGHPLVKEGKLANLLAWRAEEDSLEE 200
           + +  P VKEGKL NLL W   ED+LEE
Sbjct: 367 MVNPAP-VKEGKLGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score =  119 bits (298), Expect = 4e-27
 Identities = 59/91 (64%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
 Frame = -1

Query: 463 GHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284
           GHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+GEN
Sbjct: 307 GHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGEN 364

Query: 283 VESG-HPLVKEGKLANLLAWRAEEDSLEEGA 194
           VES   P+ K+ KLANLL W  E D++EE A
Sbjct: 365 VESAPPPMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 445 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 278
           G  LD + Y C+    Q L   G ++YQ F      A   GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352



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>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -1

Query: 439 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284
           KLD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 445 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 278
           G  LD + Y C     Q L   G ++YQ F          GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352



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>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 439 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284
           +LD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 331 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 191
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,837,165
Number of Sequences: 219361
Number of extensions: 988232
Number of successful extensions: 2899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2895
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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