Clone Name | rbasd3e10 |
---|---|
Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 177 bits (448), Expect = 2e-44 Identities = 87/96 (90%), Positives = 91/96 (94%), Gaps = 2/96 (2%) Frame = -1 Query: 463 GHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284 GHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF EN Sbjct: 300 GHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--EN 357 Query: 283 VESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 182 VESGHPLVKEGKLANLLAWRAEE+SLEE GA+LCE Sbjct: 358 VESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 121 bits (304), Expect = 8e-28 Identities = 59/88 (67%), Positives = 70/88 (79%) Frame = -1 Query: 463 GHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284 GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN Sbjct: 307 GHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAEN 366 Query: 283 VESGHPLVKEGKLANLLAWRAEEDSLEE 200 + + P VKEGKL NLL W ED+LEE Sbjct: 367 MVNPAP-VKEGKLGNLLPW--GEDALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 119 bits (298), Expect = 4e-27 Identities = 59/91 (64%), Positives = 69/91 (75%), Gaps = 1/91 (1%) Frame = -1 Query: 463 GHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284 GHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+ A SP+SVFHCF+GEN Sbjct: 307 GHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGEN 364 Query: 283 VESG-HPLVKEGKLANLLAWRAEEDSLEEGA 194 VES P+ K+ KLANLL W E D++EE A Sbjct: 365 VESAPPPMKKDYKLANLLCWEEEADAMEEKA 395
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 35.8 bits (81), Expect = 0.055 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = -1 Query: 445 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 278 G LD + Y C+ Q L G ++YQ F A GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 33.9 bits (76), Expect = 0.21 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = -1 Query: 439 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284 KLD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 33.5 bits (75), Expect = 0.27 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -1 Query: 445 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 278 G LD + Y C Q L G ++YQ F GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 32.7 bits (73), Expect = 0.46 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -1 Query: 439 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 284 +LD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 331 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 191 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,837,165 Number of Sequences: 219361 Number of extensions: 988232 Number of successful extensions: 2899 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2895 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)