ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3e03 |
|---|---|
| Clone Library Name | barley_pub |
>YFGB_ECOLI (P36979) Hypothetical UPF0063 protein yfgB| Length = 384 Score = 110 bits (276), Expect = 2e-24 Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 2/129 (1%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLRE--ELCLRPKSIVLFEYVMLAGVNDSV 375 LA+SL+A DE+R+ I+PIN+KYN+ T L +R E + V EYVML VND Sbjct: 230 LAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGT 289 Query: 374 DDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGD 195 + A +L EL++ PCKINLI +NP G+ + + + +I F +L+ G T +VR +RGD Sbjct: 290 EHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGD 349 Query: 194 DQMAACGQL 168 D AACGQL Sbjct: 350 DIDAACGQL 358
>Y365_HAEIN (P44665) Hypothetical UPF0063 protein HI0365| Length = 390 Score = 106 bits (264), Expect = 6e-23 Identities = 56/129 (43%), Positives = 85/129 (65%), Gaps = 2/129 (1%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSI--VLFEYVMLAGVNDSV 375 LA+SL+A DE+R+ I+PIN+KYN+ TL+ ++ L + + V EYVML VND V Sbjct: 235 LAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGV 294 Query: 374 DDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGD 195 + A +L E+++ PCKINLI +NP + + + + +I F+ L++ TV++R +RGD Sbjct: 295 EHAHQLAEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGD 354 Query: 194 DQMAACGQL 168 D AACGQL Sbjct: 355 DIDAACGQL 363
>Y1428_HELPY (O25970) Hypothetical UPF0063 protein HP1428| Length = 357 Score = 105 bits (261), Expect = 1e-22 Identities = 56/129 (43%), Positives = 83/129 (64%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYVMLAGVNDSVDD 369 LA+SL+A D+ R+ +MP+N+KYN+ +L +R+ L + V+FEY+++ +NDS+D Sbjct: 223 LAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRK-WPLEQRKRVMFEYLLIKDLNDSLDC 281 Query: 368 AKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQ 189 AK+L +L+ GI K+NLI FNPH GS+F+ E F + L GL +R S+ D Sbjct: 282 AKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDI 341 Query: 188 MAACGQLGE 162 AACGQL E Sbjct: 342 EAACGQLRE 350
>Y3806_PSEAE (Q51385) Hypothetical UPF0063 protein PA3806| Length = 379 Score = 105 bits (261), Expect = 1e-22 Identities = 57/128 (44%), Positives = 80/128 (62%), Gaps = 1/128 (0%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELC-LRPKSIVLFEYVMLAGVNDSVD 372 LA+SL+A DE+RN ++PIN+KY L LL R + L K ++ EY +L VND + Sbjct: 222 LALSLHAPNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPE 281 Query: 371 DAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDD 192 A+++ L++ PCKINLI FNP S ++ + I F++ML + G V VR +RGDD Sbjct: 282 HAEQMIALLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDD 341 Query: 191 QMAACGQL 168 AACGQL Sbjct: 342 IDAACGQL 349
>YE28_HELPJ (Q9ZJI4) Hypothetical UPF0063 protein jhp_1325| Length = 357 Score = 104 bits (260), Expect = 2e-22 Identities = 56/129 (43%), Positives = 83/129 (64%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYVMLAGVNDSVDD 369 LA+SL+A D+ R+ +MP+N+KYN+ +L +R+ L + V+FEY+++ +NDS+D Sbjct: 223 LAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRK-WPLEQRKRVMFEYLLIKDLNDSLDC 281 Query: 368 AKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQ 189 AK+L +L+ GI K+NLI FNPH GS+F+ E F + L GL +R S+ D Sbjct: 282 AKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDI 341 Query: 188 MAACGQLGE 162 AACGQL E Sbjct: 342 EAACGQLRE 350
>Y265_BUCBP (Q89AK8) Hypothetical UPF0063 protein bbp_265| Length = 373 Score = 103 bits (258), Expect = 3e-22 Identities = 59/129 (45%), Positives = 83/129 (64%), Gaps = 2/129 (1%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRP--KSIVLFEYVMLAGVNDSV 375 LAVSL+A+ + +RN +MPIN+KYN+ ++L +++ L K V EYVML+G+ND+ Sbjct: 229 LAVSLHASNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAA 288 Query: 374 DDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGD 195 A+ L L++ IP KINLI +N SGS + + D I F N+LI+ G V +R RG Sbjct: 289 YHAEELFNLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIRKIRGY 348 Query: 194 DQMAACGQL 168 D AACGQL Sbjct: 349 DINAACGQL 357
>Y286_BUCAI (P57373) Hypothetical UPF0063 protein BU286| Length = 363 Score = 103 bits (256), Expect = 5e-22 Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 2/135 (1%) Frame = -1 Query: 566 NESNCDLAVSLNATTDEVRNWIMPINRKYNLSTLLGTLRE--ELCLRPKSIVLFEYVMLA 393 N + LA+SL+A D +RN IMPINRKYN+S++L + + + + + EYVML Sbjct: 219 NMIDVSLAISLHAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLD 278 Query: 392 GVNDSVDDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMV 213 +NDS ++A++L+ L+ IP KINLI +N SG F + ++I F N+L + G T + Sbjct: 279 RINDSNENARQLSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTI 338 Query: 212 RLSRGDDQMAACGQL 168 R +RG+D AACGQL Sbjct: 339 RKNRGEDINAACGQL 353
>Y275_BUCAP (Q8K9P5) Hypothetical UPF0063 protein BUsg275| Length = 363 Score = 92.8 bits (229), Expect = 7e-19 Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 2/139 (1%) Frame = -1 Query: 578 NASLNESNCDLAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREEL--CLRPKSIVLFEY 405 N + + + LA+SL+A D +RN IMPIN KYN+ + L ++ + L + V EY Sbjct: 215 NKLIKKIDVSLAISLHAPNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEY 274 Query: 404 VMLAGVNDSVDDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGL 225 VML G+ND + A+ L +++ IP KINLI +N + F + +I F N+L + G Sbjct: 275 VMLRGINDLNEHAEELGNILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGF 334 Query: 224 TVMVRLSRGDDQMAACGQL 168 +R +RG D AACGQL Sbjct: 335 NTTIRKNRGQDIGAACGQL 353
>YLON_BACSU (O34617) Hypothetical UPF0063 protein yloN| Length = 363 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/128 (37%), Positives = 72/128 (56%) Frame = -1 Query: 551 DLAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYVMLAGVNDSVD 372 + A+SL+A E+R+ +MPINR Y L L+ ++ + + I FEY + GVND V+ Sbjct: 227 NFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGRRIS-FEYGLFGGVNDQVE 285 Query: 371 DAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDD 192 A+ L +L+ G+ C +NLI N + TP ++I F L G+ V +R +G D Sbjct: 286 HAEELADLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHD 345 Query: 191 QMAACGQL 168 AACGQL Sbjct: 346 IDAACGQL 353
>Y098_SYNY3 (Q55880) Hypothetical UPF0063 protein sll0098| Length = 350 Score = 78.2 bits (191), Expect = 2e-14 Identities = 48/126 (38%), Positives = 68/126 (53%) Frame = -1 Query: 545 AVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYVMLAGVNDSVDDA 366 AVSL+A +R ++P R Y L LL R + + + FEYV+LAGVND A Sbjct: 211 AVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGRRVT-FEYVLLAGVNDQPVHA 269 Query: 365 KRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQM 186 + L + +RG +NLI +NP S ++ + +I +F +L + V VR SRG Sbjct: 270 EELAQKLRGFQTHVNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQAD 329 Query: 185 AACGQL 168 AACGQL Sbjct: 330 AACGQL 335
>Y2904_MYCBO (P0A645) Hypothetical UPF0063 protein Mb2904c| Length = 364 Score = 62.0 bits (149), Expect = 1e-09 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 3/134 (2%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYVMLAGVNDS--- 378 LA+SL+A D +R+ ++P+N ++ +S L R + + + + EY ++ VND Sbjct: 231 LALSLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGRRVSI-EYALIRDVNDQPWR 289 Query: 377 VDDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRG 198 D + V G +NLI NP GS + +P EF + G++ VR +RG Sbjct: 290 ADLLGKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRG 349 Query: 197 DDQMAACGQLGEPG 156 + AACGQL G Sbjct: 350 REISAACGQLAAVG 363
>Y2880_MYCTU (P0A644) Hypothetical UPF0063 protein Rv2880c/Rv2879c/MT2947| Length = 364 Score = 62.0 bits (149), Expect = 1e-09 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 3/134 (2%) Frame = -1 Query: 548 LAVSLNATTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYVMLAGVNDS--- 378 LA+SL+A D +R+ ++P+N ++ +S L R + + + + EY ++ VND Sbjct: 231 LALSLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGRRVSI-EYALIRDVNDQPWR 289 Query: 377 VDDAKRLTELVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRG 198 D + V G +NLI NP GS + +P EF + G++ VR +RG Sbjct: 290 ADLLGKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRG 349 Query: 197 DDQMAACGQLGEPG 156 + AACGQL G Sbjct: 350 REISAACGQLAAVG 363
>Y597_METJA (Q58014) Hypothetical protein MJ0597| Length = 357 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Frame = -1 Query: 527 TTDEVRNWIMPINRKYNLSTLLGTLREELCLRPKSIVLFEYV-MLAGVNDSVDDAKRLTE 351 T + R+WI P L +++ L L+ K + L + ++ G+ + +D ++L Sbjct: 144 TVSKDRDWICP-------GKPLDKIKDNL-LKAKELGLKTGITIILGLGEKEEDIEKLLN 195 Query: 350 LVRGIPC-KINLISFNPHSGSQFKPTPDEKIIEFRN 246 L+ + +I S NP G+ ++ P IE+ N Sbjct: 196 LIEELDLNRITFYSLNPQKGTIYENKPSVTTIEYMN 231
>NMT2_ARATH (Q94L32) Probable glycylpeptide N-tetradecanoyltransferase 2 (EC| 2.3.1.97) (Peptide N-myristoyltransferase 2) (Myristoyl-CoA:protein N-myristoyltransferase 2) (NMT 2) (Type I N-myristoyltransferase 2) Length = 430 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 178 QAAIWSSPLLSRTITVRPDWINMLRNSIIFSSGV 279 QAA SS +LSR +T DW+ ML + G+ Sbjct: 211 QAAYTSSHILSRPVTTSRDWVRMLNPKKLIDVGL 244
>CG11_YEAST (P20437) G1/S-specific cyclin CLN1| Length = 546 Score = 29.6 bits (65), Expect = 6.8 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -1 Query: 578 NASLNESNCDLAVSLNATTDEVRNWIMPINRKY 480 N NES CD A+S+++ ++ +N MP++ Y Sbjct: 455 NQFKNESACDSAISVSSLPNQTQNGNMPLSSNY 487
>YCBC_ECOLI (P0AB01) Hypothetical protein ycbC| Length = 259 Score = 29.3 bits (64), Expect = 8.9 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Frame = +1 Query: 229 PDWINMLRNSIIFSSGVGLNWDPLWGLKEMRLILQGIPRXXXXXXX-----XXXXXXXXP 393 P W N + I G G W+P W LI +PR Sbjct: 71 PTWNNSQKVDYIVVLGGGYTWNPQWA-PSSNLINNSLPRLNEGIRLWRENPGSKLIFTGG 129 Query: 394 ASMTYSNSTMDLGLKQSSSLKVPR 465 + T + ST ++G + + SL VPR Sbjct: 130 VAKTNTVSTAEVGARVAQSLGVPR 153
>YCBC_ECO57 (P0AB02) Hypothetical protein ycbC| Length = 259 Score = 29.3 bits (64), Expect = 8.9 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Frame = +1 Query: 229 PDWINMLRNSIIFSSGVGLNWDPLWGLKEMRLILQGIPRXXXXXXX-----XXXXXXXXP 393 P W N + I G G W+P W LI +PR Sbjct: 71 PTWNNSQKVDYIVVLGGGYTWNPQWA-PSSNLINNSLPRLNEGIRLWRENPGSKLIFTGG 129 Query: 394 ASMTYSNSTMDLGLKQSSSLKVPR 465 + T + ST ++G + + SL VPR Sbjct: 130 VAKTNTVSTAEVGARVAQSLGVPR 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,638,913 Number of Sequences: 219361 Number of extensions: 1636022 Number of successful extensions: 4387 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4377 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
