ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2o23 |
|---|---|
| Clone Library Name | barley_pub |
>KEULE_ARATH (Q9C5X3) SNARE-interacting protein KEULE| Length = 666 Score = 167 bits (424), Expect = 2e-41 Identities = 87/134 (64%), Positives = 109/134 (81%), Gaps = 2/134 (1%) Frame = -1 Query: 659 KDEYNCMNDP*SQFPCST-YPLPVLQARTSPAHSMRSRKTGGSWARPRGSDDGYSSDSVL 483 K+++ CMNDP F ST ++ A SMRSR+T +WA+PRGSDDGYSSDSVL Sbjct: 534 KEDFPCMNDPSPSFHGSTSLSSAASSSQGQAAQSMRSRRTP-TWAKPRGSDDGYSSDSVL 592 Query: 482 KHASSDFQKHGQRIFVFVIGGATRSELRAAHKLTSKLKREVILGSSSLDDPPQFITKLKM 303 +HASSDF+K GQRIFVF++GGATRSEL+ HKL++KLKREVILGS+SLDDPPQFITKLK+ Sbjct: 593 RHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKL 652 Query: 302 MSA-EELTLDDLHI 264 ++A ++L+LDDL I Sbjct: 653 LTANDDLSLDDLQI 666
>SEC1B_ARATH (Q9SZ77) Protein transport Sec1b (AtSec1b)| Length = 662 Score = 124 bits (311), Expect = 2e-28 Identities = 73/135 (54%), Positives = 89/135 (65%), Gaps = 3/135 (2%) Frame = -1 Query: 659 KDEYNCMNDP*SQFPCSTYPLPVLQARTSPA--HSMRSRKTGGSWARPRGSDDGYSSDSV 486 K +Y CMN+P F + L SP HS R+ +WAR SDDGY SDSV Sbjct: 537 KQDYPCMNEPKPTFYSGS-----LSPSASPVLPHSRRTP----TWARRHLSDDGYFSDSV 587 Query: 485 LKHASSDFQKHGQRIFVFVIGGATRSELRAAHKLTSKLKREVILGSSSLDDPPQFITKLK 306 L ASS F++ GQRIFVF++GGATRSELR HKLT KL REVILGSSS DP F+TK+K Sbjct: 588 LGRASSGFKRKGQRIFVFIVGGATRSELRVCHKLTEKLDREVILGSSSFLDPLTFLTKMK 647 Query: 305 MMS-AEELTLDDLHI 264 ++ EE++LDD+ I Sbjct: 648 QLNEEEEISLDDIVI 662
>SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a)| Length = 611 Score = 112 bits (279), Expect = 1e-24 Identities = 66/126 (52%), Positives = 82/126 (65%), Gaps = 11/126 (8%) Frame = -1 Query: 659 KDEYNCMNDP*SQFPC---------STYPLPVLQARTSPAHSMRSRKTGGSWARPRGSDD 507 K +Y CMN + S+ P V + + +P HSMRSR+T +WARP SDD Sbjct: 481 KSDYLCMNQSSHKEESEARTGSVRKSSAPTAVPERKATP-HSMRSRRTA-TWARPHSSDD 538 Query: 506 GYSSDSVLKHASSDFQKHG--QRIFVFVIGGATRSELRAAHKLTSKLKREVILGSSSLDD 333 GYS S+L + DF G +RIFVF+IGGATRSELR HKLTS L+REV+LGS+S DD Sbjct: 539 GYSRHSILHN---DFLFFGPFERIFVFIIGGATRSELRVCHKLTSSLRREVVLGSTSFDD 595 Query: 332 PPQFIT 315 PPQ+IT Sbjct: 596 PPQYIT 601
>UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Uncoordinated| protein 18) Length = 591 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -1 Query: 539 GSWARPRGSDDGYSSDSVLKHASSDFQKHGQRIFVFVIGGATRSELRAAHKLTSKLKR-E 363 G W + RG Y S G R+ +++IGG T SE+RA +++T+ K E Sbjct: 519 GQWHKERGQQSNYRS--------------GPRLIIYIIGGVTFSEMRACYEVTAARKPWE 564 Query: 362 VILGSSSLDDPPQFITKLK 306 V++GS + P +F+T L+ Sbjct: 565 VVIGSDRIITPDKFLTNLR 583
>STXB3_MOUSE (Q60770) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (MUNC-18-3) Length = 592 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Frame = -1 Query: 461 QKHGQRIFVFVIGGATRSELRAAHKLTSKLKR-EVILGSSSLDDPPQFITKLKMMS 297 +K+G R+ +FVIGG T SE+R A++++ K EVI+GS+ + P + + +KM++ Sbjct: 526 RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLN 581
>ROP_DROME (Q07327) Protein ROP| Length = 597 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/58 (36%), Positives = 40/58 (68%), Gaps = 1/58 (1%) Frame = -1 Query: 458 KHGQRIFVFVIGGATRSELRAAHKLTSKLKR-EVILGSSSLDDPPQFITKLKMMSAEE 288 K+ R+ VF++GG + SE+R A+++T+ ++ EV++GSS + P F++ L +S E+ Sbjct: 540 KNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVLVGSSHILSPEIFLSDLGSLSKED 597
>STXB3_HUMAN (O00186) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (UNC-18-3) (Platelet Sec1 protein) (PSP) Length = 592 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Frame = -1 Query: 461 QKHGQRIFVFVIGGATRSELRAAHKLTSKLKR-EVILGSSSLDDPPQFITKLKMMS 297 +K+G ++ VFVIGG T SE+R A++++ K EVI+GS+ + P + + +KM++ Sbjct: 525 RKNGSKLIVFVIGGITYSEVRGAYEVSQAHKSCEVIIGSTHVLTPKKLLDDIKMLN 580
>STXB2_MOUSE (Q64324) Syntaxin-binding protein 2 (UNC-18 homolog 2) (UNC-18B)| (MUSEC1) Length = 593 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 2/53 (3%) Frame = -1 Query: 452 GQRIFVFVIGGATRSELRAAHKLT--SKLKREVILGSSSLDDPPQFITKLKMM 300 G R+ V+++GG SE+RAA+++T ++ K EV++GSS + P +F+ LK + Sbjct: 531 GPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKTL 583
>STXB2_HUMAN (Q15833) Syntaxin-binding protein 2 (Unc-18 homolog 2) (Unc-18B)| (Unc18-2) Length = 593 Score = 43.5 bits (101), Expect = 6e-04 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 2/53 (3%) Frame = -1 Query: 452 GQRIFVFVIGGATRSELRAAHKLT--SKLKREVILGSSSLDDPPQFITKLKMM 300 G R+ V+V+GG SE+RAA+++T ++ K EV++GSS + P +F+ LK + Sbjct: 531 GPRLIVYVMGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKAL 583
>STXB2_CANFA (Q28288) Syntaxin-binding protein 2 (Unc-18 homolog 2) (Unc-18B)| (Unc18-2) Length = 593 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Frame = -1 Query: 452 GQRIFVFVIGGATRSELRAAHKLTSKL--KREVILGSSSLDDPPQFITKLKMM 300 G R+ ++V+GG SE+RAA+++T K EV++GSS + P +F+ LK + Sbjct: 531 GPRLIIYVMGGVAMSEMRAAYEVTRATDGKWEVLIGSSHILTPTRFLDDLKTL 583
>STXB2_RAT (Q62753) Syntaxin-binding protein 2 (Unc-18 homolog 2) (Unc-18B)| (Unc18-2) Length = 594 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 2/53 (3%) Frame = -1 Query: 452 GQRIFVFVIGGATRSELRAAHKLT--SKLKREVILGSSSLDDPPQFITKLKMM 300 G R+ V+++GG SE+RAA+++T ++ K EV++GSS + P +F+ L+ + Sbjct: 532 GPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLRTL 584
>STXB1_RAT (P61765) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (rbSec1) (p67) Length = 594 Score = 38.9 bits (89), Expect = 0.014 Identities = 17/55 (30%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = -1 Query: 458 KHGQRIFVFVIGGATRSELRAAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 297 + G R+ +F++GG + +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>STXB1_MOUSE (O08599) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) Length = 594 Score = 38.9 bits (89), Expect = 0.014 Identities = 17/55 (30%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = -1 Query: 458 KHGQRIFVFVIGGATRSELRAAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 297 + G R+ +F++GG + +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>STXB1_HUMAN (P61764) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 38.9 bits (89), Expect = 0.014 Identities = 17/55 (30%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = -1 Query: 458 KHGQRIFVFVIGGATRSELRAAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 297 + G R+ +F++GG + +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>STXB1_BOVIN (P61763) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 38.9 bits (89), Expect = 0.014 Identities = 17/55 (30%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = -1 Query: 458 KHGQRIFVFVIGGATRSELRAAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 297 + G R+ +F++GG + +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>SEC1_YEAST (P30619) Protein transport protein SEC1| Length = 724 Score = 37.7 bits (86), Expect = 0.031 Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 2/60 (3%) Frame = -1 Query: 473 SSDFQKH--GQRIFVFVIGGATRSELRAAHKLTSKLKREVILGSSSLDDPPQFITKLKMM 300 SS+ +K+ QR F +VIGG + E++AA+ ++ R++ +GS + P +F+ +++ + Sbjct: 580 SSNIKKNIPRQRFFYYVIGGISIPEIKAAYDQSNLKNRDIFIGSDEILTPTKFLDEVERL 639
>HIS4_GEOKA (Q5KVC9) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = -1 Query: 449 QRIFVFV-IGGATRSELRAAHKLTSKLKREVILGSSSLDDPPQFITKL 309 +R+ V V +GG R+E H L + + R VILGS+++ DPP F+ K+ Sbjct: 74 RRLSVHVQVGGGIRTEEDIVHYLENGVAR-VILGSAAISDPP-FVKKM 119
>HIS4_BACSU (O35006) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 31.6 bits (70), Expect = 2.2 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = -1 Query: 428 IGGATRSELRAAHKLTSKLKREVILGSSSLDDPPQFITKLKMMSAEELTL 279 IGG RSE L++ ++R VILGSS++ +PP F+ K+ E++ + Sbjct: 82 IGGGIRSENDVYEYLSAGVER-VILGSSAVSNPP-FVKKMLKQYGEKIAI 129
>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3036 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 255 IMHMYSGASSGILLYFGIFFVIVWFV 178 I+H S ASS LLYF +FFV W + Sbjct: 756 ILHAASAASSNGLLYFILFFVAAWCI 781
>VPS45_YEAST (P38932) Vacuolar protein sorting-associated protein 45| Length = 577 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -1 Query: 449 QRIFVFVIGGATRSELRAAHKL--TSKLKREVILGSSSLDDPPQFITKLK 306 Q + +FVIGG T E R H T + V+LG +S+ +++ ++ Sbjct: 525 QDVILFVIGGVTYEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMDSIR 574
>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 30.4 bits (67), Expect = 4.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 255 IMHMYSGASSGILLYFGIFFVIVWFV 178 ++H S AS LYF IFFV W++ Sbjct: 756 VLHAASAASCNGFLYFVIFFVAAWYI 781
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 255 IMHMYSGASSGILLYFGIFFVIVWFV 178 ++H S A+ LLYF IFFV W + Sbjct: 756 VLHAASAANCHGLLYFAIFFVAAWHI 781 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,778,859 Number of Sequences: 219361 Number of extensions: 1821170 Number of successful extensions: 4451 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4440 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
