ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA 343 5e-91
2dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 5e-91
3gb|BT017588.1| Zea mays clone EL01N0430D12.c mRNA sequence 293 4e-76
4gb|AY109859.1| Zea mays CL21031_1 mRNA sequence 198 2e-47
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
6dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
7dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
8gb|AY532658.1| Nicotiana tabacum putative pyridoxine biosynthesi... 72 3e-09
9gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome... 46 0.15
10gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell P... 46 0.15
11emb|CT485612.7| Mouse DNA sequence from clone RP24-441F13 on chr... 46 0.15
12gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, compl... 46 0.15
13gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, co... 46 0.15
14emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chr... 46 0.15
15emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chr... 46 0.15
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
17emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 44 0.58
18gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complet... 44 0.58
19gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complet... 44 0.58
20gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 44 0.58
21ref|XM_447364.1| Candida glabrata CBS138 hypothetical protein (C... 42 2.3
22gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosom... 42 2.3
23gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete s... 42 2.3
24emb|AL109840.24|HSJ543J19 Human DNA sequence from clone RP4-543J... 42 2.3
25emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 42 2.3
26emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment ... 42 2.3
27gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete seq... 42 2.3
28ref|XM_680316.1| PREDICTED: Danio rerio similar to solute carrie... 42 2.3
29gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2... 42 2.3
30emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on ch... 42 2.3
31gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, comple... 42 2.3
32gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
33gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
34gb|DQ463038.1| Sorghum propinquum putative protein phosphatase 2... 40 9.0
35gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 9.0
36gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complet... 40 9.0
37emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chr... 40 9.0
38ref|XM_750087.1| Aspergillus fumigatus Af293 pseudouridylate syn... 40 9.0
39emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, comple... 40 9.0
40gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 9.0
41emb|CR376770.9| Zebrafish DNA sequence from clone DKEY-157L19 in... 40 9.0
42dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
43gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, com... 40 9.0
44ref|XM_235262.3| PREDICTED: Rattus norvegicus transmembrane 7 su... 40 9.0
45emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in ... 40 9.0
46emb|AL163032.3|CNS01RI9 Human chromosome 14 DNA sequence BAC C-2... 40 9.0
47gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.29... 40 9.0
48emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chr... 40 9.0 
>ref|XM_463995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1046

 Score =  343 bits (173), Expect = 5e-91
 Identities = 314/361 (86%)
 Strand = Plus / Minus

                                                                       
Query: 302 agattctttgtccatgtccaagaagagttgatgccatctagagtctgatgttagctctgg 361
           ||||||||| |||||||||| |||||   |||||||||||||||||||||| |  |||||
Sbjct: 705 agattctttatccatgtccaggaagaaccgatgccatctagagtctgatgtcaattctgg 646

                                                                       
Query: 362 gtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacccgatctttgga 421
           |||||| || || || |||||||||||||| | ||| |||||||| ||||||||||| ||
Sbjct: 645 gtgaaaagcagtagcgaggatgttcccttgccttacagcaacaattacccgatctttcga 586

                                                                       
Query: 422 gtacacttggtcctccacaccctcgccagatgttattgtaatgctgggtctgccagcagg 481
           ||||||||  ||||| |||||||| ||||| | ||||||||| ||||||||  | |  ||
Sbjct: 585 gtacacttcttcctcaacaccctctccagacgctattgtaatactgggtctatccgatgg 526

                                                                       
Query: 482 aacagggcaatcggccaatacttcaacatcctggcctacttctaggatagcaggtgctcg 541
           |||||| ||||| |||| |||||||||||     ||||| || | |||||||||||||||
Sbjct: 525 aacaggacaatccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcg 466

                                                                       
Query: 542 tataaatacgccacgacatgtattactccctccttccttctctgcaagcattggcactga 601
           ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 465 tataaatacgccacggcatgtatcgctccctccttccttctctgcaagcattggcactga 406

                                                                       
Query: 602 aagttctgtttcgaagctttgaagctgactcccaaaaaagttacggtggacagtacaatc 661
           |||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 405 aagttccgtttcaaagctttgaagctggctcccaaaaaagttccggtggacagtacaatc 346

            
Query: 662 t 662
           |
Sbjct: 345 t 345



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 203 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 245
           ||||||||| |||||||||||| ||| ||||||||| ||||||
Sbjct: 804 ctactcgaagatgggtagatcaagaggcttattctttgaccca 762
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>dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103H03, full
           insert sequence
          Length = 1047

 Score =  343 bits (173), Expect = 5e-91
 Identities = 314/361 (86%)
 Strand = Plus / Minus

                                                                       
Query: 302 agattctttgtccatgtccaagaagagttgatgccatctagagtctgatgttagctctgg 361
           ||||||||| |||||||||| |||||   |||||||||||||||||||||| |  |||||
Sbjct: 705 agattctttatccatgtccaggaagaaccgatgccatctagagtctgatgtcaattctgg 646

                                                                       
Query: 362 gtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacccgatctttgga 421
           |||||| || || || |||||||||||||| | ||| |||||||| ||||||||||| ||
Sbjct: 645 gtgaaaagcagtagcgaggatgttcccttgccttacagcaacaattacccgatctttcga 586

                                                                       
Query: 422 gtacacttggtcctccacaccctcgccagatgttattgtaatgctgggtctgccagcagg 481
           ||||||||  ||||| |||||||| ||||| | ||||||||| ||||||||  | |  ||
Sbjct: 585 gtacacttcttcctcaacaccctctccagacgctattgtaatactgggtctatccgatgg 526

                                                                       
Query: 482 aacagggcaatcggccaatacttcaacatcctggcctacttctaggatagcaggtgctcg 541
           |||||| ||||| |||| |||||||||||     ||||| || | |||||||||||||||
Sbjct: 525 aacaggacaatccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcg 466

                                                                       
Query: 542 tataaatacgccacgacatgtattactccctccttccttctctgcaagcattggcactga 601
           ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 465 tataaatacgccacggcatgtatcgctccctccttccttctctgcaagcattggcactga 406

                                                                       
Query: 602 aagttctgtttcgaagctttgaagctgactcccaaaaaagttacggtggacagtacaatc 661
           |||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 405 aagttccgtttcaaagctttgaagctggctcccaaaaaagttccggtggacagtacaatc 346

            
Query: 662 t 662
           |
Sbjct: 345 t 345



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 203 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 245
           ||||||||| |||||||||||| ||| ||||||||| ||||||
Sbjct: 804 ctactcgaagatgggtagatcaagaggcttattctttgaccca 762
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>gb|BT017588.1| Zea mays clone EL01N0430D12.c mRNA sequence
          Length = 794

 Score =  293 bits (148), Expect = 4e-76
 Identities = 316/372 (84%)
 Strand = Plus / Minus

                                                                       
Query: 291 gcctttgcttgagattctttgtccatgtccaagaagagttgatgccatctagagtctgat 350
           ||||||||| | |||||||| ||||||||||||||||   |||||||||| |||||||||
Sbjct: 426 gcctttgctggggattctttatccatgtccaagaagaaacgatgccatctggagtctgat 367

                                                                       
Query: 351 gttagctctgggtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacc 410
           || |  |||||||| || || || || |||||||||||||| || ||||||||||| |||
Sbjct: 366 gtcaattctgggtggaaagcagttgcgaggatgttcccttgccgcactgcaacaattacc 307

                                                                       
Query: 411 cgatctttggagtacacttggtcctccacaccctcgccagatgttattgtaatgctgggt 470
           |||||||| || ||| |||  |||||   |||||| ||| ||| ||||||||||||||||
Sbjct: 306 cgatcttttgaatactcttcttcctcagtaccctccccaaatgatattgtaatgctgggt 247

                                                                       
Query: 471 ctgccagcaggaacagggcaatcggccaatacttcaacatcctggcctacttctaggata 530
           ||| |||||||||| |||||||| ||||||| |||||||||  | |||||||| || |||
Sbjct: 246 ctgtcagcaggaacggggcaatccgccaatatttcaacatctggacctacttccagtata 187

                                                                       
Query: 531 gcaggtgctcgtataaatacgccacgacatgtattactccctccttccttctctgcaagc 590
           |||||||| ||||   |||| || || ||||||| | |||||||||||||||| | ||||
Sbjct: 186 gcaggtgcccgtacccatacaccgcggcatgtatcattccctccttccttctccgaaagc 127

                                                                       
Query: 591 attggcactgaaagttctgtttcgaagctttgaagctgactcccaaaaaagttacggtgg 650
            ||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 126 tttggcacggaaagctctgtctcaaagctttgaagctgactcccaaaaaagtttcggtgg 67

                       
Query: 651 acagtacaatct 662
           || |||||||||
Sbjct: 66  actgtacaatct 55
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>gb|AY109859.1| Zea mays CL21031_1 mRNA sequence
          Length = 848

 Score =  198 bits (100), Expect = 2e-47
 Identities = 220/260 (84%)
 Strand = Plus / Minus

                                                                       
Query: 291 gcctttgcttgagattctttgtccatgtccaagaagagttgatgccatctagagtctgat 350
           ||||||||| | |||||||| ||||||||||||||||   |||||||||| |||||||||
Sbjct: 480 gcctttgctggggattctttatccatgtccaagaagaaacgatgccatctggagtctgat 421

                                                                       
Query: 351 gttagctctgggtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacc 410
           || |  |||||||| || || || || |||||||||||||| || ||||||||||| |||
Sbjct: 420 gtcaattctgggtggaaagcagttgcgaggatgttcccttgccgcactgcaacaattacc 361

                                                                       
Query: 411 cgatctttggagtacacttggtcctccacaccctcgccagatgttattgtaatgctgggt 470
           |||||||| || ||| |||  |||||   |||||| ||| ||| ||||||||||||||||
Sbjct: 360 cgatcttttgaatactcttcttcctcagtaccctccccaaatgatattgtaatgctgggt 301

                                                                       
Query: 471 ctgccagcaggaacagggcaatcggccaatacttcaacatcctggcctacttctaggata 530
           ||| || |||||||||||||||| ||||||| |||||||||  | |||||||| |  |||
Sbjct: 300 ctgtcaacaggaacagggcaatccgccaatatttcaacatctggacctacttccaatata 241

                               
Query: 531 gcaggtgctcgtataaatac 550
           |||||||| |||||||||||
Sbjct: 240 gcaggtgcccgtataaatac 221



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 587 aagcattggcactgaaagttctgtttcgaagctttgaagctgactcccaaaaaagttacg 646
           |||| ||||||| ||||| ||||| || ||||||||||||||||||||      ||| ||
Sbjct: 184 aagctttggcacggaaagctctgtctcaaagctttgaagctgactcccnnnnnngtttcg 125

                           
Query: 647 gtggacagtacaatct 662
           |||||| |||||||||
Sbjct: 124 gtggactgtacaatct 109
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  182 bits (92), Expect = 1e-42
 Identities = 170/196 (86%)
 Strand = Plus / Plus

                                                                           
Query: 433     cctccacaccctcgccagatgttattgtaatgctgggtctgccagcaggaacagggcaat 492
               |||| |||||||| ||||| | ||||||||| ||||||||  | |  |||||||| ||||
Sbjct: 1567494 cctcaacaccctctccagacgctattgtaatactgggtctatccgatggaacaggacaat 1567553

                                                                           
Query: 493     cggccaatacttcaacatcctggcctacttctaggatagcaggtgctcgtataaatacgc 552
               | |||| |||||||||||     ||||| || | ||||||||||||||||||||||||||
Sbjct: 1567554 ccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcgtataaatacgc 1567613

                                                                           
Query: 553     cacgacatgtattactccctccttccttctctgcaagcattggcactgaaagttctgttt 612
               |||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1567614 cacggcatgtatcgctccctccttccttctctgcaagcattggcactgaaagttccgttt 1567673

                               
Query: 613     cgaagctttgaagctg 628
               | ||||||||||||||
Sbjct: 1567674 caaagctttgaagctg 1567689



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 335     ccatctagagtctgatgttagctctgggtgaaatgcggtggcaaggatgttcccttgtcg 394
               |||||||||||||||||| |  ||||||||||| || || || |||||||||||||| | 
Sbjct: 1566618 ccatctagagtctgatgtcaattctgggtgaaaagcagtagcgaggatgttcccttgcct 1566677

                                                  
Query: 395     tactgcaacaatcacccgatctttggagtacactt 429
               ||| |||||||| ||||||||||| ||||||||||
Sbjct: 1566678 tacagcaacaattacccgatctttcgagtacactt 1566712



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                
Query: 630     ctcccaaaaaagttacggtggacagtacaatct 662
               |||||||||||||| ||||||||||||||||||
Sbjct: 1567801 ctcccaaaaaagttccggtggacagtacaatct 1567833



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                          
Query: 203     ctactcgaaaatgggtagatcaggagccttattcttcgaccca 245
               ||||||||| |||||||||||| ||| ||||||||| ||||||
Sbjct: 1566396 ctactcgaagatgggtagatcaagaggcttattctttgaccca 1566438
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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1007_D04
          Length = 125503

 Score =  182 bits (92), Expect = 1e-42
 Identities = 170/196 (86%)
 Strand = Plus / Plus

                                                                        
Query: 433  cctccacaccctcgccagatgttattgtaatgctgggtctgccagcaggaacagggcaat 492
            |||| |||||||| ||||| | ||||||||| ||||||||  | |  |||||||| ||||
Sbjct: 4597 cctcaacaccctctccagacgctattgtaatactgggtctatccgatggaacaggacaat 4656

                                                                        
Query: 493  cggccaatacttcaacatcctggcctacttctaggatagcaggtgctcgtataaatacgc 552
            | |||| |||||||||||     ||||| || | ||||||||||||||||||||||||||
Sbjct: 4657 ccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcgtataaatacgc 4716

                                                                        
Query: 553  cacgacatgtattactccctccttccttctctgcaagcattggcactgaaagttctgttt 612
            |||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4717 cacggcatgtatcgctccctccttccttctctgcaagcattggcactgaaagttccgttt 4776

                            
Query: 613  cgaagctttgaagctg 628
            | ||||||||||||||
Sbjct: 4777 caaagctttgaagctg 4792



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                        
Query: 335  ccatctagagtctgatgttagctctgggtgaaatgcggtggcaaggatgttcccttgtcg 394
            |||||||||||||||||| |  ||||||||||| || || || |||||||||||||| | 
Sbjct: 3721 ccatctagagtctgatgtcaattctgggtgaaaagcagtagcgaggatgttcccttgcct 3780

                                               
Query: 395  tactgcaacaatcacccgatctttggagtacactt 429
            ||| |||||||| ||||||||||| ||||||||||
Sbjct: 3781 tacagcaacaattacccgatctttcgagtacactt 3815



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 630  ctcccaaaaaagttacggtggacagtacaatct 662
            |||||||||||||| ||||||||||||||||||
Sbjct: 4904 ctcccaaaaaagttccggtggacagtacaatct 4936



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                       
Query: 203  ctactcgaaaatgggtagatcaggagccttattcttcgaccca 245
            ||||||||| |||||||||||| ||| ||||||||| ||||||
Sbjct: 3499 ctactcgaagatgggtagatcaagaggcttattctttgaccca 3541
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0576F08
          Length = 135314

 Score =  182 bits (92), Expect = 1e-42
 Identities = 170/196 (86%)
 Strand = Plus / Plus

                                                                          
Query: 433    cctccacaccctcgccagatgttattgtaatgctgggtctgccagcaggaacagggcaat 492
              |||| |||||||| ||||| | ||||||||| ||||||||  | |  |||||||| ||||
Sbjct: 130915 cctcaacaccctctccagacgctattgtaatactgggtctatccgatggaacaggacaat 130974

                                                                          
Query: 493    cggccaatacttcaacatcctggcctacttctaggatagcaggtgctcgtataaatacgc 552
              | |||| |||||||||||     ||||| || | ||||||||||||||||||||||||||
Sbjct: 130975 ccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcgtataaatacgc 131034

                                                                          
Query: 553    cacgacatgtattactccctccttccttctctgcaagcattggcactgaaagttctgttt 612
              |||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 131035 cacggcatgtatcgctccctccttccttctctgcaagcattggcactgaaagttccgttt 131094

                              
Query: 613    cgaagctttgaagctg 628
              | ||||||||||||||
Sbjct: 131095 caaagctttgaagctg 131110



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                          
Query: 335    ccatctagagtctgatgttagctctgggtgaaatgcggtggcaaggatgttcccttgtcg 394
              |||||||||||||||||| |  ||||||||||| || || || |||||||||||||| | 
Sbjct: 130039 ccatctagagtctgatgtcaattctgggtgaaaagcagtagcgaggatgttcccttgcct 130098

                                                 
Query: 395    tactgcaacaatcacccgatctttggagtacactt 429
              ||| |||||||| ||||||||||| ||||||||||
Sbjct: 130099 tacagcaacaattacccgatctttcgagtacactt 130133



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                               
Query: 630    ctcccaaaaaagttacggtggacagtacaatct 662
              |||||||||||||| ||||||||||||||||||
Sbjct: 131222 ctcccaaaaaagttccggtggacagtacaatct 131254



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 203    ctactcgaaaatgggtagatcaggagccttattcttcgaccca 245
              ||||||||| |||||||||||| ||| ||||||||| ||||||
Sbjct: 129817 ctactcgaagatgggtagatcaagaggcttattctttgaccca 129859
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>gb|AY532658.1| Nicotiana tabacum putative pyridoxine biosynthesis protein (Pdx2)
           mRNA, complete cds
          Length = 756

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 602 aagttctgtttcgaagctttgaagctgactcccaaaaaagttacggtggacagtacaatc 661
           ||||||||| || |||||||||| ||| |||||||||||||| |||||||| ||||||||
Sbjct: 366 aagttctgtctcaaagctttgaatctggctcccaaaaaagtttcggtggacggtacaatc 307
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>gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome 12, complete sequence
          Length = 192647

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 179129 ctccctccttccttctctgcaag 179151
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>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 204394

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 167993 ctccctccttccttctctgcaag 167971



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 136139 ctccctccttccttctctgcaag 136161



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 567   ctccctccttccttctctgcaag 589
             |||||||||||||||||||||||
Sbjct: 79449 ctccctccttccttctctgcaag 79471
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>emb|CT485612.7| Mouse DNA sequence from clone RP24-441F13 on chromosome 12, complete
             sequence
          Length = 116475

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 567   ctccctccttccttctctgcaag 589
             |||||||||||||||||||||||
Sbjct: 86028 ctccctccttccttctctgcaag 86006



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 567   ctccctccttccttctctgcaag 589
             |||||||||||||||||||||||
Sbjct: 70180 ctccctccttccttctctgcaag 70202
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>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence
          Length = 186243

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 185049 ctccctccttccttctctgcaag 185071



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 567    ctccctccttccttctctgc 586
              ||||||||||||||||||||
Sbjct: 177410 ctccctccttccttctctgc 177391
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>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence
          Length = 212734

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 567   ctccctccttccttctctgcaag 589
             |||||||||||||||||||||||
Sbjct: 34507 ctccctccttccttctctgcaag 34485



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 567   ctccctccttccttctctgc 586
             ||||||||||||||||||||
Sbjct: 42146 ctccctccttccttctctgc 42165
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>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete
              sequence
          Length = 156278

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 155946 ctccctccttccttctctgcaag 155924



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 124092 ctccctccttccttctctgcaag 124114
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>emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chromosome 12, complete
              sequence
          Length = 179748

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 567    ctccctccttccttctctgcaag 589
              |||||||||||||||||||||||
Sbjct: 174259 ctccctccttccttctctgcaag 174237
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 559      atgtattactccctccttcctt 580
                ||||||||||||||||||||||
Sbjct: 19207932 atgtattactccctccttcctt 19207911
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 559    atgtattactccctccttcctt 580
              ||||||||||||||||||||||
Sbjct: 141454 atgtattactccctccttcctt 141433
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>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence
          Length = 218532

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 468    ggtctgccagcaggaacagggc 489
              ||||||||||||||||||||||
Sbjct: 157035 ggtctgccagcaggaacagggc 157056
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>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence
          Length = 229988

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 468   ggtctgccagcaggaacagggc 489
             ||||||||||||||||||||||
Sbjct: 94947 ggtctgccagcaggaacagggc 94926
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>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 468   ggtctgccagcaggaacagggc 489
             ||||||||||||||||||||||
Sbjct: 91268 ggtctgccagcaggaacagggc 91289
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>ref|XM_447364.1| Candida glabrata CBS138 hypothetical protein (CAGL0I02574g) partial
           mRNA
          Length = 1206

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 290 ggcctttgcttgagattctttgtccatgt 318
           ||||||| ||| |||||||||||||||||
Sbjct: 456 ggccttttcttcagattctttgtccatgt 428
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>gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosome 19, complete
             sequence
          Length = 187859

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 564   ttactccctccttccttctct 584
             |||||||||||||||||||||
Sbjct: 64506 ttactccctccttccttctct 64486
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>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence
          Length = 116179

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 572   tccttccttctctgcaagcat 592
             |||||||||||||||||||||
Sbjct: 91620 tccttccttctctgcaagcat 91640
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>emb|AL109840.24|HSJ543J19 Human DNA sequence from clone RP4-543J19 on chromosome 20 Contains the 3'
              end of the GNAS complex locus, the CTSZ gene for cathepsin
              Z, the ATP5E gene for ATP synthase (H+ transporting,
              mitochondrial F1 complex, epsilon subunit), the TH1L gene
              for TH1-like (Drosophila), the gene for tubulin beta 1
              class VI (TUBB1), the C20orf45 gene encoding the CGI-107
              protein (LOC51012) and four CpG islands, complete sequence
          Length = 142094

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 568    tccctccttccttctctgcaa 588
              |||||||||||||||||||||
Sbjct: 105189 tccctccttccttctctgcaa 105169
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 290    ggcctttgcttgagattctttgtccatgt 318
              ||||||| ||| |||||||||||||||||
Sbjct: 232848 ggccttttcttcagattctttgtccatgt 232820
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>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24
          Length = 295650

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 167    cagcaaccggatgatcaaatt 187
              |||||||||||||||||||||
Sbjct: 171229 cagcaaccggatgatcaaatt 171249
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>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence
          Length = 127568

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 572   tccttccttctctgcaagcat 592
             |||||||||||||||||||||
Sbjct: 92515 tccttccttctctgcaagcat 92495
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>ref|XM_680316.1| PREDICTED: Danio rerio similar to solute carrier family 22, member 16
            (LOC557279), mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 495  gccaatacttcaacatcctgg 515
            |||||||||||||||||||||
Sbjct: 1331 gccaatacttcaacatcctgg 1311
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>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence
          Length = 230827

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 568    tccctccttccttctctgcaa 588
              |||||||||||||||||||||
Sbjct: 102350 tccctccttccttctctgcaa 102330
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>emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on chromosome 12, complete
              sequence
          Length = 219570

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 565    tactccctccttccttctctg 585
              |||||||||||||||||||||
Sbjct: 130925 tactccctccttccttctctg 130905
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>gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, complete sequence
          Length = 200563

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 564   ttactccctccttccttctct 584
             |||||||||||||||||||||
Sbjct: 25823 ttactccctccttccttctct 25843
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>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12,
             complete sequence
          Length = 102029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 575   ttccttctctgcaagcattg 594
             ||||||||||||||||||||
Sbjct: 17124 ttccttctctgcaagcattg 17143
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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
              complete sequence
          Length = 117724

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    ttccttctctgcaagcattg 594
              ||||||||||||||||||||
Sbjct: 115202 ttccttctctgcaagcattg 115221
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>gb|DQ463038.1| Sorghum propinquum putative protein phosphatase 2C gene, exon 1 and
           partial cds
          Length = 2837

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 atttcggttttcctagctct 204
           ||||||||||||||||||||
Sbjct: 48  atttcggttttcctagctct 67
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    ggtctgccagcaggaacagg 487
              ||||||||||||||||||||
Sbjct: 355181 ggtctgccagcaggaacagg 355162
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>gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complete sequence
          Length = 71082

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tttggagcacaatggcaattattt 94
             |||||||||||||||| |||||||
Sbjct: 25336 tttggagcacaatggccattattt 25359
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>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete
              sequence
          Length = 218144

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    gaatcctttcctgtcagcaa 172
              ||||||||||||||||||||
Sbjct: 144258 gaatcctttcctgtcagcaa 144277
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>ref|XM_750087.1| Aspergillus fumigatus Af293 pseudouridylate synthase (Afu2g08460)
           partial mRNA
          Length = 1734

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 571 ctccttccttctctgcaagc 590
           ||||||||||||||||||||
Sbjct: 673 ctccttccttctctgcaagc 654
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>emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, complete sequence
          Length = 33266

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   attcttcgacccaacttctgcatt 256
             ||||||| ||||||||||||||||
Sbjct: 27948 attcttctacccaacttctgcatt 27971
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 468     ggtctgccagcaggaacagg 487
               ||||||||||||||||||||
Sbjct: 1923112 ggtctgccagcaggaacagg 1923093
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>emb|CR376770.9| Zebrafish DNA sequence from clone DKEY-157L19 in linkage group 13,
            complete sequence
          Length = 49495

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  ttctgcattgtttgaagatg 267
            ||||||||||||||||||||
Sbjct: 5497 ttctgcattgtttgaagatg 5478
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 575      ttccttctctgcaagcattg 594
                ||||||||||||||||||||
Sbjct: 14386416 ttccttctctgcaagcattg 14386435
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>gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, complete sequence
          Length = 235968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    ggcaaggatgttcccttgtc 393
              ||||||||||||||||||||
Sbjct: 153934 ggcaaggatgttcccttgtc 153915
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>ref|XM_235262.3| PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 4
           (predicted) (Tm7sf4_predicted), mRNA
          Length = 1445

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 618 ctttgaagctgactcccaaa 637
           ||||||||||||||||||||
Sbjct: 877 ctttgaagctgactcccaaa 896
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>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20,
              complete sequence
          Length = 116609

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    gccaatacttcaacatcctg 514
              ||||||||||||||||||||
Sbjct: 113767 gccaatacttcaacatcctg 113786
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>emb|AL163032.3|CNS01RI9 Human chromosome 14 DNA sequence BAC C-2303B20 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 130313

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 567    ctccctccttccttctctgc 586
              ||||||||||||||||||||
Sbjct: 108410 ctccctccttccttctctgc 108391
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>gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.299_G_24, complete sequence
          Length = 173126

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 570   cctccttccttctctgcaag 589
             ||||||||||||||||||||
Sbjct: 96134 cctccttccttctctgcaag 96153
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>emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chromosome 2, complete
             sequence
          Length = 215428

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 366   aatgcggtggcaaggatgttcccttgtc 393
             |||| |||||||||||| ||||||||||
Sbjct: 41936 aatgaggtggcaaggattttcccttgtc 41909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,772,663
Number of Sequences: 3902068
Number of extensions: 5772663
Number of successful extensions: 121310
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121008
Number of HSP's gapped (non-prelim): 300
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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