ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2o16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subu... 30 5.5
2UCN2_RAT (Q91WW1) Urocortin-2 precursor (Urocortin II) (Ucn II) 30 9.4

>TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 359

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 24/83 (28%), Positives = 31/83 (37%)
 Frame = +1

Query: 376 RPFGPRKTKTSRPS*KPCHQRGPCRASP*RGTAS*NGSGTASRCALARAQTDFSSAHGRC 555
           RP  P  +    P   P   R  CR S   GT S  G G+      A +    +S  G C
Sbjct: 13  RPPPPTPSLVGLPPPPPSPPRSLCRRSAALGTGSSTGRGSERTPGAAASGAAAASEDGSC 72

Query: 556 GKGSRCCCYHPRHLKKT*CHGSC 624
           G     C  +P   ++  CH  C
Sbjct: 73  G-----CLPNPGTFEE--CHRKC 88



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>UCN2_RAT (Q91WW1) Urocortin-2 precursor (Urocortin II) (Ucn II)|
          Length = 109

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 2   VLVLLILXTQPGLPIVRYSDTPQTKQQAANQS**KHSTVSSRTHGATSKAEAPSNQNKQA 181
           V ++L+L   PG PI  +   PQ   +         S+VSS +   T+   + S  N +A
Sbjct: 8   VFMVLMLDRVPGTPIPTFQLLPQNYPETT------PSSVSSESPSDTTTGPSASWSNSKA 61

Query: 182 PSWTSTRSALAL 217
             +  TR  L+L
Sbjct: 62  SPYLDTRVILSL 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,582,314
Number of Sequences: 219361
Number of extensions: 1904619
Number of successful extensions: 4600
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4593
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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