ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2o15 |
|---|---|
| Clone Library Name | barley_pub |
>RPE65_HUMAN (Q16518) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 47.0 bits (110), Expect = 3e-05 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 1/142 (0%) Frame = -2 Query: 535 GTDVAMEFPVIN-DKYVGLHHRYAYAQVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKE 359 G A EFP IN KY G + YAY +N F L+ + KE Sbjct: 410 GPRQAFEFPQINYQKYCGKPYTYAYGLGLN--------------HFVPDRLCKLNVKTKE 455 Query: 358 SCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRF 179 + + E + + S IFV+ DAL EDDG ++S V G A+++ Sbjct: 456 T--------WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAK 507 Query: 178 ESGPVAKITLPQRVPYGFHGAF 113 + VA+ + +P FHG F Sbjct: 508 DLSEVARAEVEINIPVTFHGLF 529
>RPE65_CERAE (Q9XT71) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 47.0 bits (110), Expect = 3e-05 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 1/142 (0%) Frame = -2 Query: 535 GTDVAMEFPVIN-DKYVGLHHRYAYAQVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKE 359 G A EFP IN KY G + YAY +N F L+ + KE Sbjct: 410 GPRQAFEFPQINYQKYCGKPYTYAYGLGLN--------------HFVPDRLCKLNVKTKE 455 Query: 358 SCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRF 179 + + E + + S IFV+ DAL EDDG ++S V G A+++ Sbjct: 456 T--------WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAK 507 Query: 178 ESGPVAKITLPQRVPYGFHGAF 113 + VA+ + +P FHG F Sbjct: 508 DLSEVARAEVEINIPVTFHGLF 529
>RPE65_BOVIN (Q28175) Retinal pigment epithelium-specific 65 kDa protein| (Membrane receptor p63) Length = 532 Score = 46.2 bits (108), Expect = 6e-05 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 1/142 (0%) Frame = -2 Query: 535 GTDVAMEFPVIN-DKYVGLHHRYAYAQVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKE 359 G A EFP IN KY G + YAY +N F L+ + KE Sbjct: 410 GPRQAFEFPQINYQKYGGKPYTYAYGLGLN--------------HFVPDRLCKLNVKTKE 455 Query: 358 SCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRF 179 + + E + + S IFV+ DAL EDDG ++S V G A+++ Sbjct: 456 T--------WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAK 507 Query: 178 ESGPVAKITLPQRVPYGFHGAF 113 + VA+ + +P FHG F Sbjct: 508 DLSEVARAEVEINIPVTFHGLF 529
>RPE65_CHICK (Q9YGX2) Retinal pigment epithelium-specific 65 kDa protein| Length = 533 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -2 Query: 523 AMEFPVIN-DKYVGLHHRYAYAQVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGD 347 A EFP IN KY G + Y Y +N F L+ + KE+ Sbjct: 415 AFEFPQINYKKYGGKPYTYTYGLGLN--------------HFVPDRLCKLNVKTKET--- 457 Query: 346 SIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGP 167 + E + + S IFV+ DAL EDDG ++S V G+ A+++ + Sbjct: 458 -----WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSIVISPGSGPKPAYLLILNAKDMSE 512 Query: 166 VAKITLPQRVPYGFHGAF 113 VA+ + +P FHG F Sbjct: 513 VARAEVEVNIPVTFHGLF 530
>RPE65_MOUSE (Q91ZQ5) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 45.1 bits (105), Expect = 1e-04 Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 1/142 (0%) Frame = -2 Query: 535 GTDVAMEFPVIN-DKYVGLHHRYAYAQVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKE 359 G A EFP IN K+ G + YAY +N F L+ + KE Sbjct: 410 GPRQAFEFPQINYQKFGGKPYTYAYGLGLN--------------HFVPDKLCKLNVKTKE 455 Query: 358 SCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRF 179 + E + + S IFV++ DAL EDDG ++S V G A+++ Sbjct: 456 I--------WMWQEPDSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAK 507 Query: 178 ESGPVAKITLPQRVPYGFHGAF 113 + +A+ + +P FHG F Sbjct: 508 DLSEIARAEVETNIPVTFHGLF 529
>RPE65_RAT (O70276) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = -2 Query: 319 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 140 E + + S IFV++ DAL EDDG ++S V G A+++ + +A+ + Sbjct: 461 EPDSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETN 520 Query: 139 VPYGFHGAF 113 +P FHG F Sbjct: 521 IPVTFHGLF 529
>RPE65_CANFA (Q9TVB8) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -2 Query: 319 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 140 E + + S IFV+ DAL EDDG ++S V G A+++ + VA+ + Sbjct: 461 EPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEIN 520 Query: 139 VPYGFHGAF 113 +P FHG F Sbjct: 521 IPVTFHGLF 529
>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 43.1 bits (100), Expect = 5e-04 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%) Frame = -2 Query: 535 GTDVAMEFPVIN-DKYVGLHHRYAYAQVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKE 359 G A EFP IN K+ G + YAY +N F L+ + KE Sbjct: 410 GPRQAFEFPQINYKKHGGKDYTYAYGVGLN--------------HFVPDRLSKLNVKTKE 455 Query: 358 SCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRF 179 + + E + + S IFV++ DA+ EDDG ++S V G A ++ Sbjct: 456 T--------WVWQEPDTYPSEPIFVSQPDAIEEDDGVVLSVVISPGEGQKPAFLLILNAK 507 Query: 178 ESGPVAKITLPQRVPYGFHGAF 113 + +A+ + +P FHG F Sbjct: 508 DMSEIARAEVDSNIPVTFHGMF 529
>RPE65_CYNPY (Q8AXN9) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = -2 Query: 319 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 140 E + + S IFV++ DA+ EDDG ++S + + G A ++ + +A+ + Sbjct: 461 EPDSYPSEPIFVSQPDAMEEDDGVVLSVIVNPGPGQKPAFLLILNAKDMSEIARAEVDIN 520 Query: 139 VPYGFHGAF 113 +P FHG + Sbjct: 521 IPVTFHGMY 529
>BCDO2_HUMAN (Q9BYV7) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 319 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQ-AHIIDARRFESGPVAKITLPQ 143 E + S +FV ED G I+S V N S ++DA+ FE + + +P Sbjct: 486 EDGFYPSEPVFVPAPGTNEEDGGVILSVVITPNQNESNFLLVLDAKNFEE--LGRAEVPV 543 Query: 142 RVPYGFHGAFV 110 ++PYGFHG F+ Sbjct: 544 QMPYGFHGTFI 554
>BCDO2_MACFA (Q8HXG8) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 39.7 bits (91), Expect = 0.005 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 319 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQ-AHIIDARRFESGPVAKITLPQ 143 E + S +FV ED G I+S V N S ++DA+ FE + + +P Sbjct: 486 EDGFYPSEPVFVPVPGTNEEDGGVILSVVITPNQNESNFLLVLDAKNFEE--LGRAEVPV 543 Query: 142 RVPYGFHGAFV 110 ++PYGFHG F+ Sbjct: 544 QMPYGFHGTFI 554
>BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 532 Score = 37.0 bits (84), Expect = 0.035 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 319 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQ-AHIIDARRFESGPVAKITLPQ 143 E + S +FV A ED G I+S V + S ++DA+ F + + +P Sbjct: 462 EEGFYPSEPVFVPVPGADEEDSGVILSVVITPNQSESNFLLVLDAKSFTE--LGRAEVPV 519 Query: 142 RVPYGFHGAFV 110 ++PYGFHG FV Sbjct: 520 QMPYGFHGTFV 530
>PACC_CANAL (Q9UW14) pH-response transcription factor pacC/RIM101 (pH-response| regulator protein 2) Length = 661 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2 Query: 404 LWSHCSTTTSHTPFHVHHLCVCVPVMQANILVIDNREFHSDICP 535 LW +C TTT HL V VP+ + FH D+CP Sbjct: 247 LWENCGTTTVKRDHITSHLRVHVPL----------KPFHCDLCP 280
>ERFB_YARLI (Q6C890) Palmitoyltransferase ERF2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein ERF2) (Ras protein acyltransferase) Length = 408 Score = 30.8 bits (68), Expect = 2.5 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Frame = +2 Query: 371 LVKI*FCKTSKLW-----SHCSTTTSHTPFHVHH 457 LV + +C T K+W SHCS + FH HH Sbjct: 205 LVYLKYCSTCKIWRPPRASHCSDCDNCVDFHDHH 238
>RF3_XANCP (Q8P6V6) Peptide chain release factor 3 (RF-3)| Length = 534 Score = 30.0 bits (66), Expect = 4.3 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Frame = +1 Query: 247 SIHHPHVAHPLSPQKL--LLSRIDLFQGGGTPHGLNLHK----TP*FLGQDIVLQNLQTL 408 S+ P +A + Q L L ++L QG P L+ ++ TP F G + +Q L Sbjct: 207 SLDAPGLAEKIGTQMLDELREELELVQGASNPFDLDAYRAGQQTPVFFGSGVNNFGVQPL 266 Query: 409 VSLFHNHQP 435 + F H P Sbjct: 267 LDFFVEHAP 275
>AROC_VIBAN (P39198) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.0 bits (66), Expect = 4.3 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 17/104 (16%) Frame = -2 Query: 517 EFPVINDKYVGLHHRYAYAQVVNVEGSMAGGCGT-----VRPKFGGFAKLYLDQE----- 368 ++ I DK+ H Y Y Q + GG + +R G AK YL QE Sbjct: 94 DYSDIKDKFRPGHADYTYHQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLKQEFGVEI 153 Query: 367 ------IKESCGDSIHVEYHHLETNQ-FCSGAIFVAKEDALHED 257 + + C D V+++ +E N FC A VA D L D Sbjct: 154 RAYLSQMGDVCIDK--VDWNEIENNAFFCPDADKVAAFDQLIRD 195
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 342 IESPQDSLISWSRYSFAKPPNFGLTVPQPPAILP 443 ++SP D+ IS S Y + +G+T P P +LP Sbjct: 813 VDSPGDNEISSSSYIYIIESEYGITSPFPVTVLP 846
>PYRC_NEIMB (Q9K0D1) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 344 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 262 HVAHPLSPQKLLLSRIDLFQGGGTPH 339 +VA ++PQ LLL+R DL GG PH Sbjct: 189 NVAATVTPQHLLLNRNDLLVGGVRPH 214
>PYRC_NEIMA (Q9JVD6) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 344 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 262 HVAHPLSPQKLLLSRIDLFQGGGTPH 339 +VA ++PQ LLL+R DL GG PH Sbjct: 189 NVAATVTPQHLLLNRNDLLVGGVRPH 214
>K0226_MOUSE (Q80U62) Protein KIAA0226| Length = 956 Score = 29.3 bits (64), Expect = 7.3 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 18/83 (21%) Frame = -2 Query: 448 VEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGDSIHVEYHHLETNQFC----------- 302 VEG ++ C V K+GG +L C D ++ YH L +Q C Sbjct: 37 VEGLVSANCPNVWSKYGGLERL---------CRDMQNILYHGLIHDQVCCRQADYWQFVK 87 Query: 301 -------SGAIFVAKEDALHEDD 254 A+ V K +LHE D Sbjct: 88 DIRWLSPHSALHVEKFISLHESD 110
>PYRC_ARATH (O04904) Dihydroorotase, mitochondrial precursor (EC 3.5.2.3)| (DHOase) Length = 377 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +1 Query: 265 VAHPLSPQKLLLSRIDLFQGGGTPH 339 V ++PQ LLL+R LFQGG PH Sbjct: 224 VGATVTPQHLLLNRNALFQGGLQPH 248
>PYRC_SYNY3 (P74438) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 342 Score = 29.3 bits (64), Expect = 7.3 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 262 HVAHPLSPQKLLLSRIDLFQGGGTPH 339 ++A ++PQ LL SR LF+GG PH Sbjct: 189 NIAATITPQHLLFSRNALFKGGICPH 214
>UVRA_STRMU (P72481) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 943 Score = 28.9 bits (63), Expect = 9.5 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -2 Query: 370 EIKESCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIID 191 E+ ++ +I V L G +F + E ALH DG++I D+ I H Sbjct: 192 ELSKNKMHNIEVVVDRLVQKDGIRGRLFDSIEAALHLGDGYVIIDTMDDHELIFSEHY-- 249 Query: 190 ARRFESGPVAKITLPQRVP--YGFHGAFVS 107 S PV T+P+ P + F+ F S Sbjct: 250 -----SCPVCGFTVPELEPRLFSFNAPFGS 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,170,841 Number of Sequences: 219361 Number of extensions: 1913325 Number of successful extensions: 5543 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5358 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5543 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
