ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2o15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482035.1| Oryza sativa (japonica cultivar-group), mRNA 90 9e-15
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
3dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
4ref|XM_482019.1| Oryza sativa (japonica cultivar-group), mRNA 64 5e-07
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
6dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
7dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
8dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
9gb|AC006692.2| Caenorhabditis elegans cosmid T28F12, complete se... 48 0.030
10gb|AC123662.13| Mus musculus chromosome 5, clone RP23-213N8, com... 44 0.46
11gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 42 1.8
12emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in... 42 1.8
13gb|AC024775.1| Caenorhabditis elegans cosmid Y41D4A, complete se... 40 7.3
14gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 7.3
15gb|AC146162.2| Pan troglodytes BAC clone RP43-23P8 from 7, compl... 40 7.3
16gb|AC092610.1| Homo sapiens BAC clone RP11-160E17 from 7, comple... 40 7.3
17gb|AC145939.3| Pan troglodytes BAC clone RP43-18N13 from 7, comp... 40 7.3
18gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 40 7.3
19emb|CR391997.9| Zebrafish DNA sequence from clone CH211-236G14 i... 40 7.3
20emb|Z68159.1|CEC33D9 Caenorhabditis elegans Cosmid C33D9, comple... 40 7.3
21gb|AC090707.16| Homo sapiens chromosome 11, clone RP11-701I24, c... 40 7.3
22gb|AC112662.7| Mus musculus chromosome 5, clone RP23-467F2, comp... 40 7.3
23gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, com... 40 7.3
24gb|AC055782.9| Homo sapiens chromosome 15, clone RP11-528P19, co... 40 7.3
25gb|AC022254.11| Homo sapiens chromosome 15, clone RP11-282M16, c... 40 7.3
26gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cance... 40 7.3
27gb|AF036695.2| Caenorhabditis elegans cosmid F16B3, complete seq... 40 7.3
28gb|AC018608.9|AC018608 Homo sapiens chromosome 8, clone RP11-403... 40 7.3
29emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in... 40 7.3
30emb|BX324232.7| Zebrafish DNA sequence from clone DKEY-220B14 in... 40 7.3
31dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
32gb|AC156394.6| Mus musculus 6 BAC RP24-314D22 (Roswell Park Canc... 40 7.3
33gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cance... 40 7.3
34gb|AC108039.4| Homo sapiens BAC clone RP11-210C5 from 2, complet... 40 7.3
35dbj|AP002372.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.3
36dbj|AP003383.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.3
37gb|AC146130.4| Pan troglodytes BAC clone RP43-4F10 from chromoso... 40 7.3
38gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
39dbj|AP006674.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 7.3
40gb|AC010173.27| Homo sapiens 12 BAC RP11-977B10 (Roswell Park Ca... 40 7.3 
>ref|XM_482035.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  ccatgaaagccatagggtactctttgtggcaatgttattttagcaactggcccactctca 179
            |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||
Sbjct: 1400 ccatgaaagccatagggtactctttgtggcaatgttatcttagcaattggtccattttca 1341

                 
Query: 180  aatct 184
            |||||
Sbjct: 1340 aatct 1336



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 106/129 (82%)
 Strand = Plus / Minus

                                                                        
Query: 377  aagatatagttttgcaaaacctccaaactttggtctcactgttccacaaccaccagccat 436
            ||||| ||||||||| ||||||||||| ||||||| |||||||||||| |||||  ||| 
Sbjct: 1299 aagatgtagttttgcgaaacctccaaattttggtcgcactgttccacagccaccttccag 1240

                                                                        
Query: 437  actcccttccacgttcaccacctgtgcgtatgcgtacctgtgatgcaagccaacatactt 496
             |||||||  || |  | ||| ||||| ||||| ||| ||||||||| |||| |||| ||
Sbjct: 1239 gctcccttggacatcaatcacttgtgcatatgcatacttgtgatgcaggccagcatattt 1180

                     
Query: 497  gtcattgat 505
            || ||||||
Sbjct: 1179 gttattgat 1171
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                            
Query: 120      ccatgaaagccatagggtactctttgtggcaatgttattttagcaactggcccactctca 179
                |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||
Sbjct: 17331571 ccatgaaagccatagggtactctttgtggcaatgttatcttagcaattggtccattttca 17331630

                     
Query: 180      aatct 184
                |||||
Sbjct: 17331631 aatct 17331635



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                            
Query: 459      tgtgcgtatgcgtacctgtgatgcaagccaacatacttgtcattgataaccgggaattcc 518
                ||||| ||||| ||| ||||||||| |||| |||| |||| |||||| || |||||||||
Sbjct: 17332656 tgtgcatatgcatacttgtgatgcaggccagcatatttgttattgatcactgggaattcc 17332715

                                 
Query: 519      atagcgacatctgtccc 535
                | ||| |||||||||||
Sbjct: 17332716 agagcaacatctgtccc 17332732



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 114      aatgctccatgaaagccatagggtactctttgtggcaatgttat 157
                ||||||||||| || |||||||||||||||||||| ||| ||||
Sbjct: 17221944 aatgctccatgcaaaccatagggtactctttgtggtaatattat 17221987



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 377      aagatatagttttgcaaaacctccaaactttggtctcact 416
                ||||| ||||||||| ||||||||||| ||||||| ||||
Sbjct: 17332303 aagatgtagttttgcgaaacctccaaattttggtcgcact 17332342



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 295      ctcctgagcagaattgattt 314
                ||||||||||||||||||||
Sbjct: 17222470 ctcctgagcagaattgattt 17222489
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>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1267_E11
          Length = 117073

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                         
Query: 120   ccatgaaagccatagggtactctttgtggcaatgttattttagcaactggcccactctca 179
             |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||
Sbjct: 15195 ccatgaaagccatagggtactctttgtggcaatgttatcttagcaattggtccattttca 15254

                  
Query: 180   aatct 184
             |||||
Sbjct: 15255 aatct 15259



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                         
Query: 459   tgtgcgtatgcgtacctgtgatgcaagccaacatacttgtcattgataaccgggaattcc 518
             ||||| ||||| ||| ||||||||| |||| |||| |||| |||||| || |||||||||
Sbjct: 16280 tgtgcatatgcatacttgtgatgcaggccagcatatttgttattgatcactgggaattcc 16339

                              
Query: 519   atagcgacatctgtccc 535
             | ||| |||||||||||
Sbjct: 16340 agagcaacatctgtccc 16356



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 377   aagatatagttttgcaaaacctccaaactttggtctcact 416
             ||||| ||||||||| ||||||||||| ||||||| ||||
Sbjct: 15927 aagatgtagttttgcgaaacctccaaattttggtcgcact 15966
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>ref|XM_482019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1992

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 122/152 (80%)
 Strand = Plus / Minus

                                                                        
Query: 114  aatgctccatgaaagccatagggtactctttgtggcaatgttattttagcaactggccca 173
            ||||||||||| || |||||||||||||||||||| ||| |||| || || |  ||  ||
Sbjct: 1973 aatgctccatgcaaaccatagggtactctttgtggtaatattatcttggctataggttca 1914

                                                                        
Query: 174  ctctcaaatcttcgtgcgtcgataatatgtgcctgtgatatatttgtgccctcatcgtgc 233
            ||||||||  |||| ||||| || || ||| | | ||||||||| ||  ||||||| || 
Sbjct: 1913 ctctcaaagtttcgggcgtcaatgatgtgtacttttgatatattggtttcctcatcatga 1854

                                            
Query: 234  acaaaagagattatccatccatcatcctcatg 265
            ||||| || | |||||| |||||||| |||||
Sbjct: 1853 acaaatgaaactatccagccatcatcttcatg 1822



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  ctcctgagcagaattgattt 314
            ||||||||||||||||||||
Sbjct: 1792 ctcctgagcagaattgattt 1773
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                 
Query: 119     tccatgaaagccatagggtactctttgtggcaat 152
               ||||||||| ||||||||||||||||||||||||
Sbjct: 9198399 tccatgaaaaccatagggtactctttgtggcaat 9198432
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>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1742_G01
          Length = 154912

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                               
Query: 119   tccatgaaagccatagggtactctttgtggcaat 152
             ||||||||| ||||||||||||||||||||||||
Sbjct: 23690 tccatgaaaaccatagggtactctttgtggcaat 23723
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>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0091C18
          Length = 154416

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 114    aatgctccatgaaagccatagggtactctttgtggcaatgttat 157
              ||||||||||| || |||||||||||||||||||| ||| ||||
Sbjct: 145799 aatgctccatgcaaaccatagggtactctttgtggtaatattat 145842



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    ctcctgagcagaattgattt 314
              ||||||||||||||||||||
Sbjct: 146325 ctcctgagcagaattgattt 146344
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>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H03
          Length = 189893

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 114   aatgctccatgaaagccatagggtactctttgtggcaatgttat 157
             ||||||||||| || |||||||||||||||||||| ||| ||||
Sbjct: 82569 aatgctccatgcaaaccatagggtactctttgtggtaatattat 82612



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   ctcctgagcagaattgattt 314
             ||||||||||||||||||||
Sbjct: 83095 ctcctgagcagaattgattt 83114
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>gb|AC006692.2| Caenorhabditis elegans cosmid T28F12, complete sequence
          Length = 51851

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 82    gctatgtttgctttcattaagtttttga 109
             ||||||||| ||||||||||||||||||
Sbjct: 14548 gctatgttttctttcattaagtttttga 14521
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>gb|AC123662.13| Mus musculus chromosome 5, clone RP23-213N8, complete sequence
          Length = 223267

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 247    tccatccatcatcctcatgtag 268
              ||||||||||||||||||||||
Sbjct: 128178 tccatccatcatcctcatgtag 128199
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 363     ttgatttcttggtcaagatat 383
               |||||||||||||||||||||
Sbjct: 1818759 ttgatttcttggtcaagatat 1818779
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>emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in linkage group 24,
             complete sequence
          Length = 156999

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    ttcattaagtttttgagacaa 114
             |||||||||||||||||||||
Sbjct: 39866 ttcattaagtttttgagacaa 39846
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>gb|AC024775.1| Caenorhabditis elegans cosmid Y41D4A, complete sequence
          Length = 58069

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    gctatgtttgctttcattaagttt 105
             ||||||||| ||||||||||||||
Sbjct: 53776 gctatgttttctttcattaagttt 53753
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 364     tgatttcttggtcaagatat 383
               ||||||||||||||||||||
Sbjct: 2465424 tgatttcttggtcaagatat 2465443
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>gb|AC146162.2| Pan troglodytes BAC clone RP43-23P8 from 7, complete sequence
          Length = 183434

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cattaagtttttgagacaaa 115
              ||||||||||||||||||||
Sbjct: 178465 cattaagtttttgagacaaa 178446
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>gb|AC092610.1| Homo sapiens BAC clone RP11-160E17 from 7, complete sequence
          Length = 162018

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cattaagtttttgagacaaa 115
              ||||||||||||||||||||
Sbjct: 140018 cattaagtttttgagacaaa 139999
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>gb|AC145939.3| Pan troglodytes BAC clone RP43-18N13 from 7, complete sequence
          Length = 187077

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   cattaagtttttgagacaaa 115
            ||||||||||||||||||||
Sbjct: 8577 cattaagtttttgagacaaa 8596
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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   ccacatggattgaatctcca 353
             ||||||||||||||||||||
Sbjct: 27810 ccacatggattgaatctcca 27829
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>emb|CR391997.9| Zebrafish DNA sequence from clone CH211-236G14 in linkage group 17,
             complete sequence
          Length = 163437

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   ttgctcctgagcagaattga 311
             ||||||||||||||||||||
Sbjct: 33251 ttgctcctgagcagaattga 33270
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>emb|Z68159.1|CEC33D9 Caenorhabditis elegans Cosmid C33D9, complete sequence
          Length = 34332

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   tggccagtcaccggttaata 50
            ||||||||||||||||||||
Sbjct: 5258 tggccagtcaccggttaata 5239
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>gb|AC090707.16| Homo sapiens chromosome 11, clone RP11-701I24, complete sequence
          Length = 185029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tgctttcattaagtttttga 109
             ||||||||||||||||||||
Sbjct: 18413 tgctttcattaagtttttga 18394
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>gb|AC112662.7| Mus musculus chromosome 5, clone RP23-467F2, complete sequence
          Length = 200679

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgcctgtgatatatttgtgc 222
             ||||||||||||||||||||
Sbjct: 79908 tgcctgtgatatatttgtgc 79889
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>gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, complete sequence
          Length = 208055

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   tgcaagccaacatacttgtc 499
             ||||||||||||||||||||
Sbjct: 17150 tgcaagccaacatacttgtc 17169
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>gb|AC055782.9| Homo sapiens chromosome 15, clone RP11-528P19, complete sequence
          Length = 172697

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   gatttcttggtcaagatata 384
             ||||||||||||||||||||
Sbjct: 25765 gatttcttggtcaagatata 25746
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>gb|AC022254.11| Homo sapiens chromosome 15, clone RP11-282M16, complete sequence
          Length = 188601

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   gatttcttggtcaagatata 384
             ||||||||||||||||||||
Sbjct: 88484 gatttcttggtcaagatata 88503
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>gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160698

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gcctgtgatatatttgtgcc 223
             ||||||||||||||||||||
Sbjct: 30114 gcctgtgatatatttgtgcc 30133
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>gb|AF036695.2| Caenorhabditis elegans cosmid F16B3, complete sequence
          Length = 36818

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    gctatgtttgctttcattaagttt 105
             ||||||||| ||||||||||||||
Sbjct: 21343 gctatgttttctttcattaagttt 21366
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>gb|AC018608.9|AC018608 Homo sapiens chromosome 8, clone RP11-403P13, complete sequence
          Length = 200863

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttttgcaaaacctccaaact 405
             ||||||||||||||||||||
Sbjct: 73187 ttttgcaaaacctccaaact 73168
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>emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in linkage group 3,
             complete sequence
          Length = 171843

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   caagatatagttttgcaaaa 395
             ||||||||||||||||||||
Sbjct: 71439 caagatatagttttgcaaaa 71458
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>emb|BX324232.7| Zebrafish DNA sequence from clone DKEY-220B14 in linkage group 12,
            complete sequence
          Length = 95455

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 288  aaaattgctcctgagcagaattga 311
            |||| |||||||||||||||||||
Sbjct: 1041 aaaactgctcctgagcagaattga 1018
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 334      ccacatggattgaatctcca 353
                ||||||||||||||||||||
Sbjct: 18185318 ccacatggattgaatctcca 18185299
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>gb|AC156394.6| Mus musculus 6 BAC RP24-314D22 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171323

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    gtgatatatttgtgccctca 227
              ||||||||||||||||||||
Sbjct: 147710 gtgatatatttgtgccctca 147729
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>gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 215023

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gtgatatatttgtgccctca 227
             ||||||||||||||||||||
Sbjct: 18712 gtgatatatttgtgccctca 18731
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>gb|AC108039.4| Homo sapiens BAC clone RP11-210C5 from 2, complete sequence
          Length = 168612

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ctacaggtaatttacactta 74
             ||||||||||||||||||||
Sbjct: 49001 ctacaggtaatttacactta 49020
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>dbj|AP002372.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-203C2, complete
              sequence
          Length = 145255

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 391    caaaacctccaaactttggt 410
              ||||||||||||||||||||
Sbjct: 124788 caaaacctccaaactttggt 124769
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>dbj|AP003383.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-21G19, complete
             sequences
          Length = 157533

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   caaaacctccaaactttggt 410
             ||||||||||||||||||||
Sbjct: 56815 caaaacctccaaactttggt 56796
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>gb|AC146130.4| Pan troglodytes BAC clone RP43-4F10 from chromosome 7, complete
             sequence
          Length = 204322

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattaagtttttgagacaaa 115
             ||||||||||||||||||||
Sbjct: 50677 cattaagtttttgagacaaa 50696
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 334      ccacatggattgaatctcca 353
                ||||||||||||||||||||
Sbjct: 18194571 ccacatggattgaatctcca 18194552
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>dbj|AP006674.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT30L06, TM0369c,
            complete sequence
          Length = 68065

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 382  atagttttgcaaaacctccaaact 405
            |||||||||||||||||| |||||
Sbjct: 3707 atagttttgcaaaacctcaaaact 3730
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>gb|AC010173.27| Homo sapiens 12 BAC RP11-977B10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 98085

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   ttggtcaagatatagttttg 390
             ||||||||||||||||||||
Sbjct: 18552 ttggtcaagatatagttttg 18533


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,552,988
Number of Sequences: 3902068
Number of extensions: 5552988
Number of successful extensions: 93811
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93599
Number of HSP's gapped (non-prelim): 212
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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