Clone Name | rbasd3d13 |
---|---|
Clone Library Name | barley_pub |
>gb|M38686.1|MUSLD1 Mus musculus ld gene, exon 1 Length = 2181 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 137 tcacagttcacagaggtctcaat 159 ||||||||||||||||||||||| Sbjct: 764 tcacagttcacagaggtctcaat 742
>gb|BC045677.1| Homo sapiens cDNA clone IMAGE:5299441 Length = 2606 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 accattggagtggagaaacgag 292 |||||||||||||||||||||| Sbjct: 2312 accattggagtggagaaacgag 2291
>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence Length = 168481 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 335 cctccaaacccatctgctgggaagga 360 ||||||||||||| |||||||||||| Sbjct: 24259 cctccaaacccatgtgctgggaagga 24284
>emb|AL672253.7| Mouse DNA sequence from clone RP23-13G19 on chromosome 2, complete sequence Length = 182150 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 tcacagttcacagaggtctcaa 158 |||||||||||||||||||||| Sbjct: 146445 tcacagttcacagaggtctcaa 146424
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 aataaaaaccacatcacagttcaca 148 |||||||||||||||||| |||||| Sbjct: 4678719 aataaaaaccacatcacaattcaca 4678743 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 atgcagtgcacacctccagctgcc 336 |||| ||||||||||||||||||| Sbjct: 12276182 atgctgtgcacacctccagctgcc 12276159
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0455A11 Length = 158629 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 aataaaaaccacatcacagttcaca 148 |||||||||||||||||| |||||| Sbjct: 36735 aataaaaaccacatcacaattcaca 36759
>gb|AC154215.1| Mus musculus BAC clone RP24-134E18 from 13, complete sequence Length = 171014 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 cccaagcataatctcacaaga 471 ||||||||||||||||||||| Sbjct: 114931 cccaagcataatctcacaaga 114951
>emb|AL831777.5| Mouse DNA sequence from clone RP23-465E7 on chromosome X, complete sequence Length = 109143 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 cccaagcataatctcacaaga 471 ||||||||||||||||||||| Sbjct: 89285 cccaagcataatctcacaaga 89305
>ref|XM_637849.1| Dictyostelium discoideum hypothetical protein (DDB0169007), partial mRNA Length = 621 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaccaataaaaaccacatca 139 |||||||||||||||||||| Sbjct: 370 aaccaataaaaaccacatca 351
>gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, complete sequence Length = 188940 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tacaataaccaataaaaacc 133 |||||||||||||||||||| Sbjct: 165037 tacaataaccaataaaaacc 165018
>ref|XM_524772.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC45474 (LOC469387), mRNA Length = 5016 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 actctgtcccaggctaccag 503 |||||||||||||||||||| Sbjct: 2631 actctgtcccaggctaccag 2650
>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05, complete sequence Length = 119573 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 ccaggctaccaggcagtgacctcc 515 |||||||||||||||||| ||||| Sbjct: 36496 ccaggctaccaggcagtgtcctcc 36519
>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence Length = 158749 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 atgcagtgcacacctccagctgcc 336 |||| ||||||||||||||||||| Sbjct: 117649 atgctgtgcacacctccagctgcc 117672
>gb|BT011336.1| Drosophila melanogaster SD02170 full insert cDNA Length = 3923 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 702 atcagccaggccaggatcagaagc 725
>ref|XM_534688.2| PREDICTED: Canis familiaris similar to 2-5oligoadenylate synthetase 3 (LOC477490), mRNA Length = 5105 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ccttggggctgctatcacaa 406 |||||||||||||||||||| Sbjct: 5006 ccttggggctgctatcacaa 5025
>ref|XM_502718.1| Yarrowia lipolytica CLIB122, YALI0D11858g predicted mRNA Length = 1653 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 ttgtcaagcgccttgatcag 577 |||||||||||||||||||| Sbjct: 962 ttgtcaagcgccttgatcag 943
>gb|AF480881.1| Yarrowia lipolytica integral peroxisomal membrane peroxin (PEX24) gene, complete cds Length = 2680 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 ttgtcaagcgccttgatcag 577 |||||||||||||||||||| Sbjct: 1436 ttgtcaagcgccttgatcag 1417
>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5 Length = 316900 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 agtggagaaacgagaaaccc 298 |||||||||||||||||||| Sbjct: 63540 agtggagaaacgagaaaccc 63559
>ref|NM_166616.1| Drosophila melanogaster Phosphodiesterase 8 CG5411-RA, transcript variant A (Pde8), mRNA Length = 4850 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 729 atcagccaggccaggatcagaagc 752
>ref|NM_137970.3| Drosophila melanogaster Phosphodiesterase 8 CG5411-RE, transcript variant E (Pde8), mRNA Length = 5390 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 479 atcagccaggccaggatcagaagc 502
>gb|AC073366.4| Homo sapiens chromosome 10 clone RP11-140C5, complete sequence Length = 176046 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ccacatcacagttcacagaggtct 155 |||||| ||||||||||||||||| Sbjct: 141184 ccacattacagttcacagaggtct 141207
>gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence Length = 206117 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaccaataaaaaccacatca 139 |||||||||||||||||||| Sbjct: 140518 aaccaataaaaaccacatca 140499
>gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104O10, complete sequence Length = 207424 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 actgcttccgtccttttcta 539 |||||||||||||||||||| Sbjct: 103717 actgcttccgtccttttcta 103736
>gb|AC126687.3| Mus musculus BAC clone RP23-149L23 from chromosome 12, complete sequence Length = 186742 Score = 40.1 bits (20), Expect = 8.1 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 532 cttttcta-gataaagctctacaacaat 558 |||||||| ||||||||||||||||||| Sbjct: 88503 cttttctacgataaagctctacaacaat 88530
>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone BACR02E09, complete sequence Length = 175118 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 9174 atcagccaggccaggatcagaagc 9197
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 ccaggctaccaggcagtgacctcc 515 |||||||||||||||||| ||||| Sbjct: 15852471 ccaggctaccaggcagtgtcctcc 15852448
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone BACR48M01, complete sequence Length = 188272 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 153232 atcagccaggccaggatcagaagc 153255
>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence Length = 254733 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaccaataaaaaccacatca 139 |||||||||||||||||||| Sbjct: 183037 aaccaataaaaaccacatca 183056
>dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21 Length = 188058 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 atgcagtgcacacctccagctgcc 336 |||| ||||||||||||||||||| Sbjct: 149674 atgctgtgcacacctccagctgcc 149651
>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0045D08 Length = 160541 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 atgcagtgcacacctccagctgcc 336 |||| ||||||||||||||||||| Sbjct: 34831 atgctgtgcacacctccagctgcc 34808
>gb|BT021326.1| Drosophila melanogaster RE07805 full insert cDNA Length = 5404 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 479 atcagccaggccaggatcagaagc 502
>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds Length = 158797 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 accacatcacagttcacaga 150 |||||||||||||||||||| Sbjct: 40575 accacatcacagttcacaga 40556
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 atcagccaggccaggatcacaagc 596 ||||||||||||||||||| |||| Sbjct: 186772 atcagccaggccaggatcagaagc 186795
>gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone rp23-393j8, complete sequence Length = 194354 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaccaataaaaaccacatca 139 |||||||||||||||||||| Sbjct: 140349 aaccaataaaaaccacatca 140330
>gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, complete sequence Length = 172148 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tacaataaccaataaaaacc 133 |||||||||||||||||||| Sbjct: 49123 tacaataaccaataaaaacc 49104
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 ttgtcaagcgccttgatcag 577 |||||||||||||||||||| Sbjct: 1470159 ttgtcaagcgccttgatcag 1470140
>gb|AC170752.2| Mus musculus BAC clone RP23-116B8 from chromosome 10, complete sequence Length = 194054 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 actgcttccgtccttttcta 539 |||||||||||||||||||| Sbjct: 10601 actgcttccgtccttttcta 10620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,261,870 Number of Sequences: 3902068 Number of extensions: 5261870 Number of successful extensions: 100297 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 100114 Number of HSP's gapped (non-prelim): 184 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)