ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M38686.1|MUSLD1 Mus musculus ld gene, exon 1 46 0.13
2gb|BC045677.1| Homo sapiens cDNA clone IMAGE:5299441 44 0.52
3gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, compl... 44 0.52
4emb|AL672253.7| Mouse DNA sequence from clone RP23-13G19 on chro... 44 0.52
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
6dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
7gb|AC154215.1| Mus musculus BAC clone RP24-134E18 from 13, compl... 42 2.1
8emb|AL831777.5| Mouse DNA sequence from clone RP23-465E7 on chro... 42 2.1
9ref|XM_637849.1| Dictyostelium discoideum hypothetical protein (... 40 8.1
10gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, c... 40 8.1
11ref|XM_524772.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 8.1
12gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
13gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
14gb|BT011336.1| Drosophila melanogaster SD02170 full insert cDNA 40 8.1
15ref|XM_534688.2| PREDICTED: Canis familiaris similar to 2-5oligo... 40 8.1
16ref|XM_502718.1| Yarrowia lipolytica CLIB122, YALI0D11858g predi... 40 8.1
17gb|AF480881.1| Yarrowia lipolytica integral peroxisomal membrane... 40 8.1
18emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; ... 40 8.1
19ref|NM_166616.1| Drosophila melanogaster Phosphodiesterase 8 CG5... 40 8.1
20ref|NM_137970.3| Drosophila melanogaster Phosphodiesterase 8 CG5... 40 8.1
21gb|AC073366.4| Homo sapiens chromosome 10 clone RP11-140C5, comp... 40 8.1
22gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence 40 8.1
23gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104... 40 8.1
24gb|AC126687.3| Mus musculus BAC clone RP23-149L23 from chromosom... 40 8.1
25gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, r... 40 8.1
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
27gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, r... 40 8.1
28gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047... 40 8.1
29dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
30dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
31gb|BT021326.1| Drosophila melanogaster RE07805 full insert cDNA 40 8.1
32gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z21... 40 8.1
33gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69... 40 8.1
34gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 8.1
35gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, c... 40 8.1
36emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 8.1
37gb|AC170752.2| Mus musculus BAC clone RP23-116B8 from chromosome... 40 8.1

>gb|M38686.1|MUSLD1 Mus musculus ld gene, exon 1
          Length = 2181

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 137 tcacagttcacagaggtctcaat 159
           |||||||||||||||||||||||
Sbjct: 764 tcacagttcacagaggtctcaat 742



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>gb|BC045677.1| Homo sapiens cDNA clone IMAGE:5299441
          Length = 2606

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 271  accattggagtggagaaacgag 292
            ||||||||||||||||||||||
Sbjct: 2312 accattggagtggagaaacgag 2291



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>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 335   cctccaaacccatctgctgggaagga 360
             ||||||||||||| ||||||||||||
Sbjct: 24259 cctccaaacccatgtgctgggaagga 24284



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>emb|AL672253.7| Mouse DNA sequence from clone RP23-13G19 on chromosome 2, complete
              sequence
          Length = 182150

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 137    tcacagttcacagaggtctcaa 158
              ||||||||||||||||||||||
Sbjct: 146445 tcacagttcacagaggtctcaa 146424



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 124     aataaaaaccacatcacagttcaca 148
               |||||||||||||||||| ||||||
Sbjct: 4678719 aataaaaaccacatcacaattcaca 4678743



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 313      atgcagtgcacacctccagctgcc 336
                |||| |||||||||||||||||||
Sbjct: 12276182 atgctgtgcacacctccagctgcc 12276159



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>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0455A11
          Length = 158629

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 124   aataaaaaccacatcacagttcaca 148
             |||||||||||||||||| ||||||
Sbjct: 36735 aataaaaaccacatcacaattcaca 36759



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>gb|AC154215.1| Mus musculus BAC clone RP24-134E18 from 13, complete sequence
          Length = 171014

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 451    cccaagcataatctcacaaga 471
              |||||||||||||||||||||
Sbjct: 114931 cccaagcataatctcacaaga 114951



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>emb|AL831777.5| Mouse DNA sequence from clone RP23-465E7 on chromosome X, complete
             sequence
          Length = 109143

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 451   cccaagcataatctcacaaga 471
             |||||||||||||||||||||
Sbjct: 89285 cccaagcataatctcacaaga 89305



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>ref|XM_637849.1| Dictyostelium discoideum hypothetical protein (DDB0169007), partial
           mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 aaccaataaaaaccacatca 139
           ||||||||||||||||||||
Sbjct: 370 aaccaataaaaaccacatca 351



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>gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, complete sequence
          Length = 188940

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    tacaataaccaataaaaacc 133
              ||||||||||||||||||||
Sbjct: 165037 tacaataaccaataaaaacc 165018



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>ref|XM_524772.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC45474
            (LOC469387), mRNA
          Length = 5016

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 484  actctgtcccaggctaccag 503
            ||||||||||||||||||||
Sbjct: 2631 actctgtcccaggctaccag 2650



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>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05,
             complete sequence
          Length = 119573

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 492   ccaggctaccaggcagtgacctcc 515
             |||||||||||||||||| |||||
Sbjct: 36496 ccaggctaccaggcagtgtcctcc 36519



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>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19,
              complete sequence
          Length = 158749

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 313    atgcagtgcacacctccagctgcc 336
              |||| |||||||||||||||||||
Sbjct: 117649 atgctgtgcacacctccagctgcc 117672



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>gb|BT011336.1| Drosophila melanogaster SD02170 full insert cDNA
          Length = 3923

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 573 atcagccaggccaggatcacaagc 596
           ||||||||||||||||||| ||||
Sbjct: 702 atcagccaggccaggatcagaagc 725



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>ref|XM_534688.2| PREDICTED: Canis familiaris similar to 2-5oligoadenylate synthetase 3
            (LOC477490), mRNA
          Length = 5105

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  ccttggggctgctatcacaa 406
            ||||||||||||||||||||
Sbjct: 5006 ccttggggctgctatcacaa 5025



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>ref|XM_502718.1| Yarrowia lipolytica CLIB122, YALI0D11858g predicted mRNA
          Length = 1653

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 558 ttgtcaagcgccttgatcag 577
           ||||||||||||||||||||
Sbjct: 962 ttgtcaagcgccttgatcag 943



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>gb|AF480881.1| Yarrowia lipolytica integral peroxisomal membrane peroxin (PEX24)
            gene, complete cds
          Length = 2680

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 558  ttgtcaagcgccttgatcag 577
            ||||||||||||||||||||
Sbjct: 1436 ttgtcaagcgccttgatcag 1417



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>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5
          Length = 316900

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   agtggagaaacgagaaaccc 298
             ||||||||||||||||||||
Sbjct: 63540 agtggagaaacgagaaaccc 63559



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>ref|NM_166616.1| Drosophila melanogaster Phosphodiesterase 8 CG5411-RA, transcript
           variant A (Pde8), mRNA
          Length = 4850

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 573 atcagccaggccaggatcacaagc 596
           ||||||||||||||||||| ||||
Sbjct: 729 atcagccaggccaggatcagaagc 752



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>ref|NM_137970.3| Drosophila melanogaster Phosphodiesterase 8 CG5411-RE, transcript
           variant E (Pde8), mRNA
          Length = 5390

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 573 atcagccaggccaggatcacaagc 596
           ||||||||||||||||||| ||||
Sbjct: 479 atcagccaggccaggatcagaagc 502



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>gb|AC073366.4| Homo sapiens chromosome 10 clone RP11-140C5, complete sequence
          Length = 176046

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    ccacatcacagttcacagaggtct 155
              |||||| |||||||||||||||||
Sbjct: 141184 ccacattacagttcacagaggtct 141207



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>gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence
          Length = 206117

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aaccaataaaaaccacatca 139
              ||||||||||||||||||||
Sbjct: 140518 aaccaataaaaaccacatca 140499



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>gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104O10, complete sequence
          Length = 207424

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 520    actgcttccgtccttttcta 539
              ||||||||||||||||||||
Sbjct: 103717 actgcttccgtccttttcta 103736



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>gb|AC126687.3| Mus musculus BAC clone RP23-149L23 from chromosome 12, complete
             sequence
          Length = 186742

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 532   cttttcta-gataaagctctacaacaat 558
             |||||||| |||||||||||||||||||
Sbjct: 88503 cttttctacgataaagctctacaacaat 88530



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>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone
            BACR02E09, complete sequence
          Length = 175118

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 573  atcagccaggccaggatcacaagc 596
            ||||||||||||||||||| ||||
Sbjct: 9174 atcagccaggccaggatcagaagc 9197



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 492      ccaggctaccaggcagtgacctcc 515
                |||||||||||||||||| |||||
Sbjct: 15852471 ccaggctaccaggcagtgtcctcc 15852448



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>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone
              BACR48M01, complete sequence
          Length = 188272

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 573    atcagccaggccaggatcacaagc 596
              ||||||||||||||||||| ||||
Sbjct: 153232 atcagccaggccaggatcagaagc 153255



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>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4,
              complete sequence
          Length = 254733

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    aaccaataaaaaccacatca 139
              ||||||||||||||||||||
Sbjct: 183037 aaccaataaaaaccacatca 183056



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>dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0063H21
          Length = 188058

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 313    atgcagtgcacacctccagctgcc 336
              |||| |||||||||||||||||||
Sbjct: 149674 atgctgtgcacacctccagctgcc 149651



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>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0045D08
          Length = 160541

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   atgcagtgcacacctccagctgcc 336
             |||| |||||||||||||||||||
Sbjct: 34831 atgctgtgcacacctccagctgcc 34808



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>gb|BT021326.1| Drosophila melanogaster RE07805 full insert cDNA
          Length = 5404

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 573 atcagccaggccaggatcacaagc 596
           ||||||||||||||||||| ||||
Sbjct: 479 atcagccaggccaggatcagaagc 502



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>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S
             ribosomal protein S8 (Z214A02.25), and putative casein
             kinase I (Z214A02.27) genes, complete cds
          Length = 158797

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   accacatcacagttcacaga 150
             ||||||||||||||||||||
Sbjct: 40575 accacatcacagttcacaga 40556



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>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete
              sequence
          Length = 598988

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 573    atcagccaggccaggatcacaagc 596
              ||||||||||||||||||| ||||
Sbjct: 186772 atcagccaggccaggatcagaagc 186795



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>gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone rp23-393j8, complete
              sequence
          Length = 194354

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aaccaataaaaaccacatca 139
              ||||||||||||||||||||
Sbjct: 140349 aaccaataaaaaccacatca 140330



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>gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, complete sequence
          Length = 172148

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tacaataaccaataaaaacc 133
             ||||||||||||||||||||
Sbjct: 49123 tacaataaccaataaaaacc 49104



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 558     ttgtcaagcgccttgatcag 577
               ||||||||||||||||||||
Sbjct: 1470159 ttgtcaagcgccttgatcag 1470140



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>gb|AC170752.2| Mus musculus BAC clone RP23-116B8 from chromosome 10, complete sequence
          Length = 194054

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   actgcttccgtccttttcta 539
             ||||||||||||||||||||
Sbjct: 10601 actgcttccgtccttttcta 10620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,261,870
Number of Sequences: 3902068
Number of extensions: 5261870
Number of successful extensions: 100297
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100114
Number of HSP's gapped (non-prelim): 184
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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