Clone Name | rbasd3d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AY103982.1| Zea mays PCO140262 mRNA sequence Length = 1929 Score = 208 bits (105), Expect = 2e-50 Identities = 237/281 (84%) Strand = Plus / Minus Query: 329 agtcctcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtga 388 ||||||||||| || ||||| |||||||||||| |||| || ||||| ||||| ||||| Sbjct: 1660 agtcctcatgcagatttggcaaacccaatcctgttctcaccgaagtcaaaaacagtgtgg 1601 Query: 389 taggcgcccatgaagacgtctccaagtatccagagcgggccgcgagggggtggtacatcg 448 ||||| ||||| || || || |||||||||||||| || || ||||| || ||||| || Sbjct: 1600 taggcacccataaaaacatcaccaagtatccagagaggaccacgaggaggcggtacgtca 1541 Query: 449 aacgccatgaacccactgatgcaaattgtctggcctgattgctccagcctcactacgtac 508 || ||||| |||||||||||||| || || || |||| |||||||||| |||||| |||| Sbjct: 1540 aatgccataaacccactgatgcagatagtttgtcctgcttgctccagcttcactatgtac 1481 Query: 509 tgctctggcgtcaaggtgaaagtcttgtttgctagggtgaaagcaagatcaggcatctct 568 |||||||| || |||||||||||||||||||||| |||||| ||||||| ||||||| | Sbjct: 1480 tgctctggtgttaaggtgaaagtcttgtttgctatggtgaatgcaagatttggcatcttt 1421 Query: 569 gagatctggtggcagtcgacggttgattctccgttggggct 609 |||||||| ||||| || || ||||| || || |||||||| Sbjct: 1420 gagatctgatggcaatcaacagttgactcgccattggggct 1380
>ref|NM_183594.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 184 bits (93), Expect = 2e-43 Identities = 180/209 (86%) Strand = Plus / Minus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 1481 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 1422 Query: 401 aagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgccatgaac 460 || ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||||| Sbjct: 1421 aacacgtctccaagaatccagagtgggccgcgtggaggtggcacgtcgaacgccatgaac 1362 Query: 461 ccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctctggcgtc 520 || |||||||||| || || ||| ||||||||| ||||||||||||||||||| ||| Sbjct: 1361 ccgctgatgcaaacagtttgaccttgctgctccagcttcactacgtactgctctggtgtc 1302 Query: 521 aaggtgaaagtcttgtttgctagggtgaa 549 |||||||| ||||||||||||| |||||| Sbjct: 1301 aaggtgaaggtcttgtttgctatggtgaa 1273
>gb|BT018637.1| Zea mays clone EL01N0504C03.d mRNA sequence Length = 1568 Score = 184 bits (93), Expect = 2e-43 Identities = 234/281 (83%) Strand = Plus / Minus Query: 329 agtcctcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtga 388 ||||||||||| || ||||| ||||||||| || ||||||| ||||| ||||| ||||| Sbjct: 1285 agtcctcatgcagatttggcaaacccaatcatgttctcgccgaagtcaaaaacagtgtgg 1226 Query: 389 taggcgcccatgaagacgtctccaagtatccagagcgggccgcgagggggtggtacatcg 448 ||| | | ||| || || || |||||||||||||| || || ||||| || ||||| || Sbjct: 1225 tagacactcataaaaacatcaccaagtatccagagaggaccacgaggaggcggtacgtca 1166 Query: 449 aacgccatgaacccactgatgcaaattgtctggcctgattgctccagcctcactacgtac 508 || ||||| |||||||||||||| || || || |||| |||||||||| |||||| |||| Sbjct: 1165 aatgccataaacccactgatgcagatagtttgtcctgcttgctccagcttcactatgtac 1106 Query: 509 tgctctggcgtcaaggtgaaagtcttgtttgctagggtgaaagcaagatcaggcatctct 568 |||||||| || |||||||||||||| ||||||| |||||| ||||||| ||||||| | Sbjct: 1105 tgctctggtgttaaggtgaaagtcttatttgctatggtgaatgcaagatttggcatcttt 1046 Query: 569 gagatctggtggcagtcgacggttgattctccgttggggct 609 |||||||| ||||| || || ||||| || || |||||||| Sbjct: 1045 gagatctgatggcaatcaacagttgactcgccattggggct 1005
>dbj|AK104371.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E08, full insert sequence Length = 1155 Score = 184 bits (93), Expect = 2e-43 Identities = 180/209 (86%) Strand = Plus / Minus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 764 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 705 Query: 401 aagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgccatgaac 460 || ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||||| Sbjct: 704 aacacgtctccaagaatccagagtgggccgcgtggaggtggcacgtcgaacgccatgaac 645 Query: 461 ccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctctggcgtc 520 || |||||||||| || || ||| ||||||||| ||||||||||||||||||| ||| Sbjct: 644 ccgctgatgcaaacagtttgaccttgctgctccagcttcactacgtactgctctggtgtc 585 Query: 521 aaggtgaaagtcttgtttgctagggtgaa 549 |||||||| ||||||||||||| |||||| Sbjct: 584 aaggtgaaggtcttgtttgctatggtgaa 556
>dbj|AK100420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B02, full insert sequence Length = 1853 Score = 184 bits (93), Expect = 2e-43 Identities = 180/209 (86%) Strand = Plus / Minus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 1592 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 1533 Query: 401 aagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgccatgaac 460 || ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||||| Sbjct: 1532 aacacgtctccaagaatccagagtgggccgcgtggaggtggcacgtcgaacgccatgaac 1473 Query: 461 ccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctctggcgtc 520 || |||||||||| || || ||| ||||||||| ||||||||||||||||||| ||| Sbjct: 1472 ccgctgatgcaaacagtttgaccttgctgctccagcttcactacgtactgctctggtgtc 1413 Query: 521 aaggtgaaagtcttgtttgctagggtgaa 549 |||||||| ||||||||||||| |||||| Sbjct: 1412 aaggtgaaggtcttgtttgctatggtgaa 1384
>dbj|AK072264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005B17, full insert sequence Length = 1778 Score = 184 bits (93), Expect = 2e-43 Identities = 180/209 (86%) Strand = Plus / Minus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 1565 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 1506 Query: 401 aagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgccatgaac 460 || ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||||| Sbjct: 1505 aacacgtctccaagaatccagagtgggccgcgtggaggtggcacgtcgaacgccatgaac 1446 Query: 461 ccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctctggcgtc 520 || |||||||||| || || ||| ||||||||| ||||||||||||||||||| ||| Sbjct: 1445 ccgctgatgcaaacagtttgaccttgctgctccagcttcactacgtactgctctggtgtc 1386 Query: 521 aaggtgaaagtcttgtttgctagggtgaa 549 |||||||| ||||||||||||| |||||| Sbjct: 1385 aaggtgaaggtcttgtttgctatggtgaa 1357
>dbj|AK066523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071P15, full insert sequence Length = 2061 Score = 184 bits (93), Expect = 2e-43 Identities = 180/209 (86%) Strand = Plus / Minus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 1646 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 1587 Query: 401 aagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgccatgaac 460 || ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||||| Sbjct: 1586 aacacgtctccaagaatccagagtgggccgcgtggaggtggcacgtcgaacgccatgaac 1527 Query: 461 ccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctctggcgtc 520 || |||||||||| || || ||| ||||||||| ||||||||||||||||||| ||| Sbjct: 1526 ccgctgatgcaaacagtttgaccttgctgctccagcttcactacgtactgctctggtgtc 1467 Query: 521 aaggtgaaagtcttgtttgctagggtgaa 549 |||||||| ||||||||||||| |||||| Sbjct: 1466 aaggtgaaggtcttgtttgctatggtgaa 1438
>dbj|AB219969.1| Triticum aestivum WAP2 mRNA for aspartic proteinase, complete cds Length = 1560 Score = 139 bits (70), Expect = 1e-29 Identities = 199/242 (82%) Strand = Plus / Minus Query: 371 aagtcgaaaacggtgtgataggcgcccatgaagacgtctccaagtatccagagcgggccg 430 |||||||| |||||||| || |||||||||||||| || ||||| |||||||| || || Sbjct: 1482 aagtcgaacacggtgtggtaagcgcccatgaagacatccccaagaatccagagaggacca 1423 Query: 431 cgagggggtggtacatcgaacgccatgaacccactgatgcaaattgtctggcctgattgc 490 || ||||| |||| ||||| |||||||||||||||||||| | || || ||||||||| Sbjct: 1422 cgtgggggcggtatgtcgaatgccatgaacccactgatgcagacggtttgccctgattgc 1363 Query: 491 tccagcctcactacgtactgctctggcgtcaaggtgaaagtcttgtttgctagggtgaaa 550 ||||| |||| |||||||||||||| || | |||||||||| |||| | ||||||| Sbjct: 1362 tccagtttcacaacgtactgctctggtgttagcacgaaagtcttgcttgcgatggtgaaa 1303 Query: 551 gcaagatcaggcatctctgagatctggtggcagtcgacggttgattctccgttggggctc 610 ||||||| ||||||| ||| |||| |||||| ||| ||||| ||||| || |||||| Sbjct: 1302 gcaagattcggcatctttgacatctcatggcagctgactgttgactctccatttgggctc 1243 Query: 611 gg 612 || Sbjct: 1242 gg 1241
>ref|XM_475576.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1491 Score = 119 bits (60), Expect = 1e-23 Identities = 222/276 (80%) Strand = Plus / Minus Query: 334 tcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggc 393 |||||| || || |||||||| |||||| | ||| ||||||||||| || ||||| || Sbjct: 1491 tcatgcagatttagcgaacccgatcctgtctttgccgaagtcgaaaaccgtatgataagc 1432 Query: 394 gcccatgaagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgc 453 ||||||||||| |||||||| ||||| || || ||||| || || |||| |||||||| Sbjct: 1431 acccatgaagacatctccaagaatccaaagaggaccgcgtggtggaggtatgtcgaacgc 1372 Query: 454 catgaacccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctc 513 ||||||||| |||||||| | || || ||| ||||||||| |||| | ||||||||| Sbjct: 1371 catgaacccgctgatgcagacggtttgccctccttgctccagtttcacgatgtactgctc 1312 Query: 514 tggcgtcaaggtgaaagtcttgtttgctagggtgaaagcaagatcaggcatctctgagat 573 ||| || | | || ||||||||||| | |||||| ||||||| |||||||| ||||| Sbjct: 1311 tggtgtaagaataaatgtcttgtttgcaatggtgaatgcaagattaggcatcttcgagat 1252 Query: 574 ctggtggcagtcgacggttgattctccgttggggct 609 || |||||| ||| ||||||||||| |||||||| Sbjct: 1251 ttgatggcagctgacagttgattctccattggggct 1216
>dbj|AK065206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F13, full insert sequence Length = 1900 Score = 119 bits (60), Expect = 1e-23 Identities = 222/276 (80%) Strand = Plus / Minus Query: 334 tcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggc 393 |||||| || || |||||||| |||||| | ||| ||||||||||| || ||||| || Sbjct: 1643 tcatgcagatttagcgaacccgatcctgtctttgccgaagtcgaaaaccgtatgataagc 1584 Query: 394 gcccatgaagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgc 453 ||||||||||| |||||||| ||||| || || ||||| || || |||| |||||||| Sbjct: 1583 acccatgaagacatctccaagaatccaaagaggaccgcgtggtggaggtatgtcgaacgc 1524 Query: 454 catgaacccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctc 513 ||||||||| |||||||| | || || ||| ||||||||| |||| | ||||||||| Sbjct: 1523 catgaacccgctgatgcagacggtttgccctccttgctccagtttcacgatgtactgctc 1464 Query: 514 tggcgtcaaggtgaaagtcttgtttgctagggtgaaagcaagatcaggcatctctgagat 573 ||| || | | || ||||||||||| | |||||| ||||||| |||||||| ||||| Sbjct: 1463 tggtgtaagaataaatgtcttgtttgcaatggtgaatgcaagattaggcatcttcgagat 1404 Query: 574 ctggtggcagtcgacggttgattctccgttggggct 609 || |||||| ||| ||||||||||| |||||||| Sbjct: 1403 ttgatggcagctgacagttgattctccattggggct 1368
>dbj|D12777.1|RICASPPRO Oryza sativa (japonica cultivar-group) mRNA for aspartic proteinase, complete cds Length = 1774 Score = 119 bits (60), Expect = 1e-23 Identities = 222/276 (80%) Strand = Plus / Minus Query: 334 tcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggc 393 |||||| || || |||||||| |||||| | ||| ||||||||||| || ||||| || Sbjct: 1572 tcatgcagatttagcgaacccgatcctgtctttgccgaagtcgaaaaccgtatgataagc 1513 Query: 394 gcccatgaagacgtctccaagtatccagagcgggccgcgagggggtggtacatcgaacgc 453 ||||||||||| |||||||| ||||| || || ||||| || || |||| |||||||| Sbjct: 1512 acccatgaagacatctccaagaatccaaagaggaccgcgtggtggaggtatgtcgaacgc 1453 Query: 454 catgaacccactgatgcaaattgtctggcctgattgctccagcctcactacgtactgctc 513 ||||||||| |||||||| | || || ||| ||||||||| |||| | ||||||||| Sbjct: 1452 catgaacccgctgatgcagacggtttgccctccttgctccagtttcacgatgtactgctc 1393 Query: 514 tggcgtcaaggtgaaagtcttgtttgctagggtgaaagcaagatcaggcatctctgagat 573 ||| || | | || ||||||||||| | |||||| ||||||| |||||||| ||||| Sbjct: 1392 tggtgtaagaataaatgtcttgtttgcaatggtgaatgcaagattaggcatcttcgagat 1333 Query: 574 ctggtggcagtcgacggttgattctccgttggggct 609 || |||||| ||| ||||||||||| |||||||| Sbjct: 1332 ttgatggcagctgacagttgattctccattggggct 1297
>gb|AY103665.1| Zea mays PCO108960 mRNA sequence Length = 1413 Score = 115 bits (58), Expect = 2e-22 Identities = 196/242 (80%) Strand = Plus / Minus Query: 371 aagtcgaaaacggtgtgataggcgcccatgaagacgtctccaagtatccagagcgggccg 430 |||||||| || ||||| || || |||||||||||||| ||||| |||||||| || || Sbjct: 1086 aagtcgaacaccgtgtggtaagctcccatgaagacgtccccaagaatccagagaggacca 1027 Query: 431 cgagggggtggtacatcgaacgccatgaacccactgatgcaaattgtctggcctgattgc 490 || || ||||| || || |||||||||||||||||||||| | || |||||| |||| Sbjct: 1026 cgcggcggtggcacgtcatacgccatgaacccactgatgcagacggtttggcctccttgc 967 Query: 491 tccagcctcactacgtactgctctggcgtcaaggtgaaagtcttgtttgctagggtgaaa 550 |||||| |||| | |||||||| || || | |||||| ||||||||||| | |||||| Sbjct: 966 tccagcttcacaatgtactgctggggtgttagggtgaaggtcttgtttgcgatggtgaac 907 Query: 551 gcaagatcaggcatctctgagatctggtggcagtcgacggttgattctccgttggggctc 610 ||||| ||||||| ||||||| |||||| ||| ||||| ||||||||||||||| Sbjct: 906 gcaaggctgggcatcttggagatctcctggcagctgactgttgactctccgttggggctc 847 Query: 611 gg 612 || Sbjct: 846 gg 845
>dbj|AB028888.1| Oryza sativa RAP mRNA for aspartic proteinase, partial cds Length = 492 Score = 109 bits (55), Expect = 1e-20 Identities = 193/239 (80%) Strand = Plus / Minus Query: 371 aagtcgaaaacggtgtgataggcgcccatgaagacgtctccaagtatccagagcgggccg 430 ||||||||||| || ||||| || ||||||||||| |||||||| ||||| || || ||| Sbjct: 242 aagtcgaaaaccgtatgataagcacccatgaagacatctccaagaatccaaagaggaccg 183 Query: 431 cgagggggtggtacatcgaacgccatgaacccactgatgcaaattgtctggcctgattgc 490 || || || |||| ||||||||||||||||| |||||||| | || || ||| |||| Sbjct: 182 cgtggtggaggtatgtcgaacgccatgaacccgctgatgcagacggtttgccctccttgc 123 Query: 491 tccagcctcactacgtactgctctggcgtcaaggtgaaagtcttgtttgctagggtgaaa 550 ||||| |||| | |||||||||||| || | | || ||| ||||||| | |||||| Sbjct: 122 tccagtttcacgatgtactgctctggtgtaagaataaatgtcctgtttgcaatggtgaat 63 Query: 551 gcaagatcaggcatctctgagatctggtggcagtcgacggttgattctccgttggggct 609 ||||||| |||||||| ||||| || |||||| ||| ||||||||||| |||||||| Sbjct: 62 gcaagattaggcatcttcgagatttgatggcagctgacagttgattctccattggggct 4
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 418 ccagagcgggccgcgagggggtggtacatcgaacgccatgaacccactgatgcaaattgt 477 |||||| |||||||| || ||||| || ||||||||||||||||| |||||||||| || Sbjct: 10490721 ccagagtgggccgcgtggaggtggcacgtcgaacgccatgaacccgctgatgcaaacagt 10490780 Query: 478 ctggcctgattgctccagcctcactacgtactgc 511 || ||| ||||||||| |||||||||||||| Sbjct: 10490781 ttgaccttgctgctccagcttcactacgtactgc 10490814 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 10490529 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 10490588 Query: 401 aagacgtctccaagtatcc 419 || ||||||||||| |||| Sbjct: 10490589 aacacgtctccaagaatcc 10490607 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 508 ctgctctggcgtcaaggtgaaagtcttgtttgctagggtgaa 549 ||||||||| ||||||||||| ||||||||||||| |||||| Sbjct: 10490900 ctgctctggtgtcaaggtgaaggtcttgtttgctatggtgaa 10490941
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0469E05 Length = 160769 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 418 ccagagcgggccgcgagggggtggtacatcgaacgccatgaacccactgatgcaaattgt 477 |||||| |||||||| || ||||| || ||||||||||||||||| |||||||||| || Sbjct: 135681 ccagagtgggccgcgtggaggtggcacgtcgaacgccatgaacccgctgatgcaaacagt 135740 Query: 478 ctggcctgattgctccagcctcactacgtactgc 511 || ||| ||||||||| |||||||||||||| Sbjct: 135741 ttgaccttgctgctccagcttcactacgtactgc 135774 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 341 gacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggcgcccatg 400 |||| |||||||||||||||| | | |||||||||||| || ||||| || || ||||| Sbjct: 135489 gactcggcgaacccaatcctgtttttgccaaagtcgaagacagtgtggtatgcagccatg 135548 Query: 401 aagacgtctccaagtatcc 419 || ||||||||||| |||| Sbjct: 135549 aacacgtctccaagaatcc 135567 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 508 ctgctctggcgtcaaggtgaaagtcttgtttgctagggtgaa 549 ||||||||| ||||||||||| ||||||||||||| |||||| Sbjct: 135860 ctgctctggtgtcaaggtgaaggtcttgtttgctatggtgaa 135901
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 530 gtcttgtttgctagggtgaaagcaagatcaggcatctctgagatctggtggcagtcgacg 589 ||||||||||| | |||||| ||||||| |||||||| ||||| || |||||| ||| Sbjct: 2117644 gtcttgtttgcaatggtgaatgcaagattaggcatcttcgagatttgatggcagctgaca 2117585 Query: 590 gttgattctccgttggggct 609 ||||||||||| |||||||| Sbjct: 2117584 gttgattctccattggggct 2117565 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 334 tcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggc 393 |||||| || || |||||||| |||||| | ||| ||||||||||| || ||||| || Sbjct: 2118433 tcatgcagatttagcgaacccgatcctgtctttgccgaagtcgaaaaccgtatgataagc 2118374 Query: 394 gcccatgaagacgtctccaagtatcc 419 ||||||||||| |||||||| |||| Sbjct: 2118373 acccatgaagacatctccaagaatcc 2118348 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 446 tcgaacgccatgaacccactgatgca 471 ||||||||||||||||| |||||||| Sbjct: 2118214 tcgaacgccatgaacccgctgatgca 2118189
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 530 gtcttgtttgctagggtgaaagcaagatcaggcatctctgagatctggtggcagtcgacg 589 ||||||||||| | |||||| ||||||| |||||||| ||||| || |||||| ||| Sbjct: 84485 gtcttgtttgcaatggtgaatgcaagattaggcatcttcgagatttgatggcagctgaca 84426 Query: 590 gttgattctccgttggggct 609 ||||||||||| |||||||| Sbjct: 84425 gttgattctccattggggct 84406 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 334 tcatgcggacttggcgaacccaatcctgctctcgccaaagtcgaaaacggtgtgataggc 393 |||||| || || |||||||| |||||| | ||| ||||||||||| || ||||| || Sbjct: 85274 tcatgcagatttagcgaacccgatcctgtctttgccgaagtcgaaaaccgtatgataagc 85215 Query: 394 gcccatgaagacgtctccaagtatcc 419 ||||||||||| |||||||| |||| Sbjct: 85214 acccatgaagacatctccaagaatcc 85189 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 446 tcgaacgccatgaacccactgatgca 471 ||||||||||||||||| |||||||| Sbjct: 85055 tcgaacgccatgaacccgctgatgca 85030
>emb|X56136.1|HVASPROT Barley mRNA for aspartic proteinase Length = 1800 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 380 acggtgtgataggcgcccatgaagacgtctccaagtatccagagcgggccgcgagg 435 |||||||| || | |||||||||||||||||| || |||||||| || |||||||| Sbjct: 1516 acggtgtggtacgggcccatgaagacgtctcccaggatccagagaggaccgcgagg 1461
>gb|U61396.2| Vigna unguiculata aspartic proteinase mRNA, complete cds Length = 1842 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 395 cccatgaagacgtctccaagtatccagagcgggccgcgagggggtg 440 |||||||||||||| ||||| |||||||| ||||| ||||| |||| Sbjct: 1604 cccatgaagacgtccccaaggatccagagagggccacgaggaggtg 1559
>emb|AJ579366.1|CRE579366 Chlamydomonas reinhardtii mRNA for aspartic proteinase (chlapsin gene) Length = 2443 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 372 agtcgaaaacggtgtgataggcgcccatgaagacgtctccaagtatcca 420 ||||||| ||||||||||||||||||| ||| | |||||| || ||||| Sbjct: 1842 agtcgaacacggtgtgataggcgcccaggaatatgtctcccaggatcca 1794
>ref|NM_001030432.1| Xenopus tropicalis pgc protein (pgc), mRNA Length = 1623 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 400 gaagacgtctccaagtatccaga 422 ||||||||||||||||||||||| Sbjct: 1093 gaagacgtctccaagtatccaga 1071
>gb|BC091055.1| Xenopus tropicalis pgc protein, mRNA (cDNA clone MGC:108312 IMAGE:7021967), complete cds Length = 1623 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 400 gaagacgtctccaagtatccaga 422 ||||||||||||||||||||||| Sbjct: 1093 gaagacgtctccaagtatccaga 1071
>emb|CR377229.8| Zebrafish DNA sequence from clone CH211-273M23 in linkage group 17, complete sequence Length = 142019 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 21 agaaaatacattaggacaattgt 43 ||||||||||||||||||||||| Sbjct: 68898 agaaaatacattaggacaattgt 68876
>emb|BX247902.6| Zebrafish DNA sequence from clone CH211-231D21 in linkage group 8, complete sequence Length = 160910 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 21 agaaaatacattaggacaattgt 43 ||||||||||||||||||||||| Sbjct: 23634 agaaaatacattaggacaattgt 23612
>emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in linkage group 1, complete sequence Length = 198219 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 21 agaaaatacattaggacaattgt 43 ||||||||||||||||||||||| Sbjct: 147614 agaaaatacattaggacaattgt 147636
>gb|BC072252.1| Xenopus laevis MGC82347 protein, mRNA (cDNA clone MGC:82347 IMAGE:4175443), complete cds Length = 2017 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 398 atgaagacgtctccaagtatccagag 423 ||||| |||||||||||||||||||| Sbjct: 1158 atgaaaacgtctccaagtatccagag 1133
>emb|AJ338042.1|HSA338042 Homo sapiens genomic sequence surrounding NotI site, clone NL1-AC5R Length = 738 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 catgctaagagacggtgcattg 91 |||||||||||||||||||||| Sbjct: 170 catgctaagagacggtgcattg 149
>emb|AJ323282.1|HSA323282 Homo sapiens genomic sequence surrounding NotI site, clone NB1-319R Length = 480 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 catgctaagagacggtgcattg 91 |||||||||||||||||||||| Sbjct: 98 catgctaagagacggtgcattg 77
>gb|AC055761.11| Homo sapiens 3 BAC RP11-73L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148114 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tctggcctgattgctccagcc 497 ||||||||||||||||||||| Sbjct: 133810 tctggcctgattgctccagcc 133830
>gb|AF266465.1|AF266465 Manihot esculenta aspartic protease mRNA, partial cds Length = 710 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 395 cccatgaagacgtctccaagtatccagagcgggccgcgagggggtggtacatc 447 |||||||| || ||||| ||||||||||| || || ||||| ||||| ||||| Sbjct: 420 cccatgaaaacatctcccagtatccagaggggcccacgaggtggtggcacatc 368
>dbj|AB091762.1| Glycine max soyAP4 mRNA for aspartic proteinase 4, partial cds Length = 664 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 395 cccatgaagacgtctccaagtatccagagcgggccgcgagg 435 ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct: 450 cccatgaagacatctccaaggatccatagagggccacgagg 410
>gb|BC017023.1| Homo sapiens dipeptidase 1 (renal), mRNA (cDNA clone MGC:8990 IMAGE:3846046), complete cds Length = 1583 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 1071 gacgtctccaagtatccaga 1090
>emb|AL133284.13| Human DNA sequence from clone RP11-67K19 on chromosome 9q33.1-34.11 Contains part of the ASTN2 gene for astrotactin 2 (KIAA0634), the TRIM32 gene for tripartite motif-containing 32, and a novel gene, complete sequence Length = 155466 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 caagttcatctgttcctttctact 234 ||||||||||| |||||||||||| Sbjct: 136136 caagttcatctcttcctttctact 136159
>gb|AC010538.9| Homo sapiens chromosome 16 clone RP11-368I7, complete sequence Length = 210031 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 103819 gacgtctccaagtatccaga 103800
>gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, complete sequence Length = 159205 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgctaagagacggtgcattg 91 |||||||||||||||||||| Sbjct: 23109 tgctaagagacggtgcattg 23090
>gb|BT008048.1| Synthetic construct Homo sapiens dipeptidase 1 (renal) mRNA, partial cds Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 949 gacgtctccaagtatccaga 968
>gb|BT006664.1| Homo sapiens dipeptidase 1 (renal) mRNA, complete cds Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 949 gacgtctccaagtatccaga 968
>gb|AC105104.7| Homo sapiens chromosome 18, clone RP11-909J22, complete sequence Length = 131296 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgctaagagacggtgcattg 91 |||||||||||||||||||| Sbjct: 56683 tgctaagagacggtgcattg 56664
>emb|CR620135.1| full-length cDNA clone CS0DF016YG17 of Fetal brain of Homo sapiens (human) Length = 1772 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 1309 gacgtctccaagtatccaga 1328
>ref|NM_004413.1| Homo sapiens dipeptidase 1 (renal) (DPEP1), mRNA Length = 1738 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 1244 gacgtctccaagtatccaga 1263
>emb|CR457404.1| Homo sapiens full open reading frame cDNA clone RZPDo834C0519D for gene DPEP1, dipeptidase 1 (renal); complete cds, incl. stopcodon Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 949 gacgtctccaagtatccaga 968
>dbj|D13137.2| Homo sapiens gene for dipeptidase precursor, complete cds Length = 2640 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 2044 gacgtctccaagtatccaga 2063
>gb|AC134978.4| Homo sapiens chromosome 18, clone RP11-671C19, complete sequence Length = 177630 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgctaagagacggtgcattg 91 |||||||||||||||||||| Sbjct: 109761 tgctaagagacggtgcattg 109742
>gb|S70330.1|S70329S2 Homo sapiens renal dipeptidase (RDP) gene, complete cds Length = 3570 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 2901 gacgtctccaagtatccaga 2920
>gb|AY891566.1| Synthetic construct Homo sapiens clone FLH025931.01L dipeptidase 1 (DPEP`) mRNA, partial cds Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 949 gacgtctccaagtatccaga 968
>gb|AY888966.1| Synthetic construct Homo sapiens clone FLH025936.01X dipeptidase 1 (DPEP1) mRNA, complete cds Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 949 gacgtctccaagtatccaga 968
>gb|AY888965.1| Synthetic construct Homo sapiens clone FLH025935.01X dipeptidase 1 (DPEP1) mRNA, complete cds Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 949 gacgtctccaagtatccaga 968
>emb|AJ340773.1|HSA340773 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GC2RS Length = 692 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgctaagagacggtgcattg 91 |||||||||||||||||||| Sbjct: 168 tgctaagagacggtgcattg 149
>emb|AJ326143.1|HSA326143 Homo sapiens genomic sequence surrounding NotI site, clone NL1-DF20R Length = 968 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgctaagagacggtgcattg 91 |||||||||||||||||||| Sbjct: 168 tgctaagagacggtgcattg 149
>gb|J05257.1|HUMMDP4 Homo sapiens (clones MDP4, MDP7) microsomal dipeptidase (MDP) mRNA, complete cds Length = 1738 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 1244 gacgtctccaagtatccaga 1263
>gb|AC008435.6| Homo sapiens chromosome 5 clone CTC-326G7, complete sequence Length = 88546 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gtgcttattacatcaacctc 141 |||||||||||||||||||| Sbjct: 57304 gtgcttattacatcaacctc 57323
>dbj|D13138.1|HUMDIPM Human mRNA for dipeptidase Length = 1489 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gacgtctccaagtatccaga 422 |||||||||||||||||||| Sbjct: 992 gacgtctccaagtatccaga 1011 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,752,778 Number of Sequences: 3902068 Number of extensions: 4752778 Number of successful extensions: 86822 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86680 Number of HSP's gapped (non-prelim): 125 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)