ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 44 0.20
2dbj|AK148701.1| Mus musculus 2 days neonate sympathetic ganglion... 44 0.20
3gb|AC156033.6| Mus musculus BAC clone RP23-377G8 from chromosome... 44 0.20
4dbj|AK042921.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 44 0.20
5emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 ... 44 0.20
6gb|AY868979.1| Uncultured alpha proteobacterium clone I3K-0178 1... 42 0.81
7gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.81
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
9emb|AL663103.4| Mouse DNA sequence from clone RP23-267D13 on chr... 40 3.2
10gb|AC005549.1|AC005549 Homo sapiens chromosome 17, clone hRPK.21... 40 3.2
11emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on ch... 40 3.2

>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 186    ttgctcttttttgttgcttctt 207
              ||||||||||||||||||||||
Sbjct: 387064 ttgctcttttttgttgcttctt 387043



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>dbj|AK148701.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120437D01
            product:hypothetical protein, full insert sequence
          Length = 2040

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 192  ttttttgttgcttcttgtcatg 213
            ||||||||||||||||||||||
Sbjct: 1544 ttttttgttgcttcttgtcatg 1523



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>gb|AC156033.6| Mus musculus BAC clone RP23-377G8 from chromosome 12, complete sequence
          Length = 216718

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 192   ttttttgttgcttcttgtcatg 213
             ||||||||||||||||||||||
Sbjct: 92790 ttttttgttgcttcttgtcatg 92769



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>dbj|AK042921.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730039L15
            product:unclassifiable, full insert sequence
          Length = 2134

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 192  ttttttgttgcttcttgtcatg 213
            ||||||||||||||||||||||
Sbjct: 1638 ttttttgttgcttcttgtcatg 1617



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>emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 in linkage group 3,
            complete sequence
          Length = 159132

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 183  gaattgctcttttttgttgctt 204
            ||||||||||||||||||||||
Sbjct: 3344 gaattgctcttttttgttgctt 3323



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>gb|AY868979.1| Uncultured alpha proteobacterium clone I3K-0178 16S ribosomal RNA
          gene, partial sequence
          Length = 452

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 26 aaccgatggcaaatgaagatg 46
          |||||||||||||||||||||
Sbjct: 45 aaccgatggcaaatgaagatg 25



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>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    gataaaaataaaccagcttca 118
             |||||||||||||||||||||
Sbjct: 97995 gataaaaataaaccagcttca 97975



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 98       gataaaaataaaccagcttca 118
                |||||||||||||||||||||
Sbjct: 19502588 gataaaaataaaccagcttca 19502568



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>emb|AL663103.4| Mouse DNA sequence from clone RP23-267D13 on chromosome 11, complete
             sequence
          Length = 238478

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   tttttgttgcttcttgtcat 212
             ||||||||||||||||||||
Sbjct: 16270 tttttgttgcttcttgtcat 16289



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>gb|AC005549.1|AC005549 Homo sapiens chromosome 17, clone hRPK.215_E_13, complete sequence
          Length = 147416

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     aaatgaagatgtatgcaaat 55
              ||||||||||||||||||||
Sbjct: 138344 aaatgaagatgtatgcaaat 138363



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>emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on chromosome 13, complete
             sequence
          Length = 117646

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aaaataaaccagcttcaacc 121
             ||||||||||||||||||||
Sbjct: 24552 aaaataaaccagcttcaacc 24571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,292,287
Number of Sequences: 3902068
Number of extensions: 2292287
Number of successful extensions: 40217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40188
Number of HSP's gapped (non-prelim): 29
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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