ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3d06 |
|---|---|
| Clone Library Name | barley_pub |
>CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5) (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2) Length = 199 Score = 86.7 bits (213), Expect = 5e-17 Identities = 44/114 (38%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L T NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA L+ Sbjct: 145 PQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLARLR 196
>CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 85.9 bits (211), Expect = 8e-17 Identities = 44/114 (38%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L T NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA L+ Sbjct: 145 PQGQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLARLR 196
>CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 85.5 bits (210), Expect = 1e-16 Identities = 43/114 (37%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA L+ Sbjct: 145 PQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLARLR 196
>CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 85.1 bits (209), Expect = 1e-16 Identities = 43/114 (37%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V++L+ ++AD+ GL++S+ LPQ +L++RLA L+ Sbjct: 145 PQNQVDNLLHEMADEAGLDLSMELPQ--GQTGSVGTSVASTEQDELSQRLARLR 196
>CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2| (Chromatin-modifying protein 1b-2) (CHMP1b-2) Length = 199 Score = 85.1 bits (209), Expect = 1e-16 Identities = 43/114 (37%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA L+ Sbjct: 145 PQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGASVASTEQDELSQRLARLR 196
>CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1| (Chromatin-modifying protein 1b-1) (CHMP1b-1) Length = 199 Score = 85.1 bits (209), Expect = 1e-16 Identities = 43/114 (37%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA L+ Sbjct: 145 PQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLARLR 196
>CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 84.7 bits (208), Expect = 2e-16 Identities = 43/114 (37%), Positives = 69/114 (60%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M+ + K+M + K+LD +L+T +LQK+S MD FE+Q N++V ME +M+ +T+L+T Sbjct: 82 MKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTT 141 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+SL+ Q+A++ GLEV L Q L+RRLA L+ Sbjct: 142 PQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195
>CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) (Vacuolar protein sorting 46-1) (Vps46-1) (hVps46-1) Length = 196 Score = 84.7 bits (208), Expect = 2e-16 Identities = 43/114 (37%), Positives = 69/114 (60%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M+ + K+M + K+LD +L+T +LQK+S MD FE+Q N++V ME +M+ +T+L+T Sbjct: 82 MKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTT 141 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+SL+ Q+A++ GLEV L Q L+RRLA L+ Sbjct: 142 PQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195
>CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 84.0 bits (206), Expect = 3e-16 Identities = 42/114 (36%), Positives = 73/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+T Sbjct: 85 MGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V++L+ ++AD+ GL++++ LPQ +L++RLA L+ Sbjct: 145 PQNQVDNLLHEMADEAGLDLNMELPQ--GQTGSVGTSVASTEQDELSQRLARLR 196
>CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 83.2 bits (204), Expect = 5e-16 Identities = 42/114 (36%), Positives = 74/114 (64%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M + KSM +VK +D++L + NL+K+S M+ FERQF ++VQ ME +M+ +T+L+T Sbjct: 85 MNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTT 144 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V++LM ++AD+ GL++++ LPQ +L++RLA+L+ Sbjct: 145 PQGQVDTLMMEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLAKLR 196
>CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 80.1 bits (196), Expect = 4e-15 Identities = 41/114 (35%), Positives = 68/114 (59%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M+ + K+M + K+LD +L+ +LQK+S MD FE+Q N++V ME +++ +T+L+T Sbjct: 82 MKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTT 141 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+SL+ Q+A++ GLEV L Q L+RRLA L+ Sbjct: 142 PQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195
>CHM1A_XENLA (Q6NUD8) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 78.2 bits (191), Expect = 2e-14 Identities = 39/114 (34%), Positives = 68/114 (59%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M+ + K+M + K+LD +L++ +LQK+S MD F++Q N++V ME +M+ + +L+T Sbjct: 82 MKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTT 141 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V++L+ Q+A++ GLEV L Q L+RRLA L+ Sbjct: 142 PQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESSTRTQEDQLSRRLASLR 195
>CHM1A_BRARE (Q6PHF0) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 198 Score = 77.8 bits (190), Expect = 2e-14 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M+ + K+M + K+LD +L++ +LQK+S MD FE Q N++V ME +M+ +T+LST Sbjct: 82 MKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLST 141 Query: 374 PETEVNSLMQQVADDYGLEVSVGLPQ--XXXXXXXXAXXXXXXXXXDLTRRLAELK 213 P+ +V+ L+ Q+A++ GLEV L Q L+RRLA L+ Sbjct: 142 PQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQEKEDQLSRRLAALR 197
>DID2_YEAST (P69771) Vacuolar protein sorting protein 46 (Charged| multivesicular body protein 1) (DOA4-independent degradation protein 2) (Fifty two inhibitor 1) Length = 204 Score = 56.2 bits (134), Expect = 7e-08 Identities = 26/80 (32%), Positives = 46/80 (57%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M+ + SMG + K +D +L NLQ+++ MD FE+QF +++ E S ++ Sbjct: 89 MRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLV 148 Query: 374 PETEVNSLMQQVADDYGLEV 315 +V+ LM +VAD+ G+E+ Sbjct: 149 DNDKVDELMSKVADENGMEL 168
>CHM2B_XENTR (Q6NVL7) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASD 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>CHM2B_CHICK (Q5F3A2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASD 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 EEEESQDIVNQVLDEIGIEIS 175
>CH2BA_XENLA (Q7SYR0) Charged multivesicular body protein 2b-A| (Chromatin-modifying protein 2b-A) (CHMP2b-A) Length = 214 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASE 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>CH2BB_XENLA (Q66IV6) Charged multivesicular body protein 2b-B| (Chromatin-modifying protein 2b-B) (CHMP2b-B) Length = 214 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASE 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5) (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2) Length = 213 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -1 Query: 554 MQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLST 375 M K+M + K +D QK +TM NF+++ + ME+ E + + S Sbjct: 102 MSTTAKTMQAVNKKMDP-------QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154 Query: 374 PETEVNSLMQQVADDYGLEVS 312 E E ++ QV D+ G+E+S Sbjct: 155 DEEESQDIVNQVLDEIGIEIS 175
>Y1053_ARCFU (O29209) Hypothetical protein AF1053| Length = 269 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 485 LQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEV 360 L + ET++N E F N++ AE GA+AG S P+ +V Sbjct: 42 LLDLRETLNNLENPFQNLQNLAE---GALAGGASYQPPQIQV 80
>ATM_DROME (Q5EAK6) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Telomere| fusion protein) Length = 2767 Score = 30.0 bits (66), Expect = 5.0 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Frame = +1 Query: 307 PTETSRP*SSATCCMRELT--SVSG------VEREVEPAMAPSMNSAWTSMLTNWRSKLS 462 P E R S C R + S+SG + ++P M PSM+S SM T Sbjct: 1198 PQEMMRLFGSLAICNRTASWYSLSGESLFKCLNFHIDPEMRPSMDSRIQSMTTLQTKHSR 1257 Query: 463 MVSDIFWRLPVAREESSDLTMLPMDFPMACILA 561 ++ DIF RL +S + DF + C +A Sbjct: 1258 VLVDIFGRLKTNCYSASFSSQALHDFFLYCEVA 1290
>PRTP_EHV1V (Q6S6N9) Probable processing and transport protein| Length = 766 Score = 30.0 bits (66), Expect = 5.0 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = -1 Query: 497 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 345 AT L T+D+F+R F + + + ++G + GS ++S P+ + +L++ Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393
>PRTP_EHV1B (Q6DLH9) Probable processing and transport protein| Length = 766 Score = 30.0 bits (66), Expect = 5.0 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = -1 Query: 497 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 345 AT L T+D+F+R F + + + ++G + GS ++S P+ + +L++ Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393
>PRTP_EHV1 (P68351) Probable processing and transport protein| Length = 766 Score = 30.0 bits (66), Expect = 5.0 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = -1 Query: 497 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 345 AT L T+D+F+R F + + + ++G + GS ++S P+ + +L++ Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393
>RM43_MOUSE (Q99N89) 39S ribosomal protein L43, mitochondrial precursor (L43mt)| (MRP-L43) (Mitochondrial ribosomal protein bMRP36a) Length = 183 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 428 VQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEV 315 + AE++ GA+ S E+ SL+Q++AD GL+V Sbjct: 75 IVAEYLNGAVREENVNSKSVEEIKSLVQKLADQSGLDV 112
>GARR_ECOLI (P0ABQ2) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)| (Tartronate semialdehyde reductase) (TSAR) Length = 294 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -1 Query: 530 GNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSL 381 GN+ K + + N+ MSE + + VN ++ + + G +AGST L Sbjct: 166 GNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVL 215
>GARR_ECOL6 (P0ABQ3) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)| (Tartronate semialdehyde reductase) (TSAR) Length = 294 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -1 Query: 530 GNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSL 381 GN+ K + + N+ MSE + + VN ++ + + G +AGST L Sbjct: 166 GNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVL 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,449,993 Number of Sequences: 219361 Number of extensions: 799779 Number of successful extensions: 2899 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2899 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
