Clone Name | rbasd3d06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY243475.1| Zea mays superal1 (Sal1) mRNA, complete cds Length = 615 Score = 488 bits (246), Expect = e-134 Identities = 346/378 (91%), Gaps = 1/378 (0%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgaccttctc 260 ||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||| Sbjct: 615 tcagccgcgggccttaagctcggcgaggcggcgagaaaggtcatcctcgtcgactttctc 556 Query: 261 cttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagacctc 320 ||| ||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||| Sbjct: 555 cttatccttggcggcagggatggcgtgggcggctgcctgcggcagaccgacggagacctc 496 Query: 321 gaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgtgga 380 ||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 495 gagcccgtagtcgtccgcgacctgctgcatgaggctgttgacctcggtctccggcgtgga 436 Query: 381 gagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgttgac 440 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 gagggaggtggagccggccatggcgccctccatgaactcggcctggacctccatgttgac 376 Query: 441 gaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggcgag 500 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 375 gaactggcgctcgaaattgtccatggtctcggacatcttctggaggttcccggtggcgag 316 Query: 501 ggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatcttggc 560 |||||||||||||||||||||||| ||||||||| |||||| |||||||||||| Sbjct: 315 cgaggagtcgagcgacttgacgatggactgcatggacttgccgatgacctgcatcttgg- 257 Query: 561 cctgcgtgtcgaggcggg 578 |||||||||||||||||| Sbjct: 256 cctgcgtgtcgaggcggg 239
>gb|AY104483.1| Zea mays PCO082662 mRNA sequence Length = 1068 Score = 488 bits (246), Expect = e-134 Identities = 346/378 (91%), Gaps = 1/378 (0%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgaccttctc 260 ||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||| Sbjct: 804 tcagccgcgggccttaagctcggcgaggcggcgagaaaggtcatcctcgtcgactttctc 745 Query: 261 cttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagacctc 320 ||| ||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||| Sbjct: 744 cttatccttggcggcagggatggcgtgggcggctgcctgcggcagaccgacggagacctc 685 Query: 321 gaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgtgga 380 ||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 684 gagcccgtagtcgtccgcgacctgctgcatgaggctgttgacctcggtctccggcgtgga 625 Query: 381 gagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgttgac 440 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 gagggaggtggagccggccatggcgccctccatgaactcggcctggacctccatgttgac 565 Query: 441 gaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggcgag 500 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 564 gaactggcgctcgaaattgtccatggtctcggacatcttctggaggttcccggtggcgag 505 Query: 501 ggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatcttggc 560 |||||||||||||||||||||||| ||||||||| |||||| |||||||||||| Sbjct: 504 cgaggagtcgagcgacttgacgatggactgcatggacttgccgatgacctgcatcttgg- 446 Query: 561 cctgcgtgtcgaggcggg 578 |||||||||||||||||| Sbjct: 445 cctgcgtgtcgaggcggg 428
>gb|AY224520.1| Oryza sativa (japonica cultivar-group) isolate 20533 development protein-like protein mRNA, complete cds Length = 618 Score = 446 bits (225), Expect = e-122 Identities = 342/379 (90%), Gaps = 4/379 (1%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgac---ctt 257 ||||||||||||||| |||||||| |||||||||| ||||||||| || || || ||| Sbjct: 618 tcagccgcgggccttaagctcagccaggcggcgggagaggtcgtcttcatcaacagcctt 559 Query: 258 ctccttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagac 317 |||||| |||||||| || || |||||||| ||||||||||| || | || |||||||| Sbjct: 558 ctccttctccttggcagctggtatggcgtgagcggcggcctgcggcaacccaacggagac 499 Query: 318 ctcgaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgt 377 ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 498 ctcaaggccgtagtcgtcggcgacttgctgcatgaggctgttgacctcggtctcgggcgt 439 Query: 378 ggagagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgtt 437 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 ggagagcgaggtggagccggccatggcgccctccatgaactcggcctggacctccatgtt 379 Query: 438 gacgaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggc 497 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 378 gacgaactggcgctcgaagttgtccatggtctcggacatcttctgcaggttccccgtggc 319 Query: 498 gagggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatctt 557 ||| | ||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 318 gagcgcggagtcgagcgacttgacgatgttggccatggacttgccgatgacctgcatctt 259 Query: 558 ggccctgcgtgtcgaggcg 576 | |||| ||||||||||| Sbjct: 258 cg-cctgggtgtcgaggcg 241
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 446 bits (225), Expect = e-122 Identities = 342/379 (90%), Gaps = 4/379 (1%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgac---ctt 257 ||||||||||||||| |||||||| |||||||||| ||||||||| || || || ||| Sbjct: 25832643 tcagccgcgggccttaagctcagccaggcggcgggagaggtcgtcttcatcaacagcctt 25832584 Query: 258 ctccttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagac 317 |||||| |||||||| || || |||||||| ||||||||||| || | || |||||||| Sbjct: 25832583 ctccttctccttggcagctggtatggcgtgagcggcggcctgcggcaacccaacggagac 25832524 Query: 318 ctcgaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgt 377 ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 25832523 ctcaaggccgtagtcgtcggcgacttgctgcatgaggctgttgacctcggtctcgggcgt 25832464 Query: 378 ggagagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgtt 437 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 25832463 ggagagcgaggtggagccggccatggcgccctccatgaactcggcctggacctccatgtt 25832404 Query: 438 gacgaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggc 497 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 25832403 gacgaactggcgctcgaagttgtccatggtctcggacatcttctgcaggttccccgtggc 25832344 Query: 498 gagggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatctt 557 ||| | ||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 25832343 gagcgcggagtcgagcgacttgacgatgttggccatggacttgccgatgacctgcatctt 25832284 Query: 558 ggccctgcgtgtcgaggcg 576 | |||| ||||||||||| Sbjct: 25832283 cg-cctgggtgtcgaggcg 25832266
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 446 bits (225), Expect = e-122 Identities = 342/379 (90%), Gaps = 4/379 (1%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgac---ctt 257 ||||||||||||||| |||||||| |||||||||| ||||||||| || || || ||| Sbjct: 114847 tcagccgcgggccttaagctcagccaggcggcgggagaggtcgtcttcatcaacagcctt 114788 Query: 258 ctccttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagac 317 |||||| |||||||| || || |||||||| ||||||||||| || | || |||||||| Sbjct: 114787 ctccttctccttggcagctggtatggcgtgagcggcggcctgcggcaacccaacggagac 114728 Query: 318 ctcgaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgt 377 ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 114727 ctcaaggccgtagtcgtcggcgacttgctgcatgaggctgttgacctcggtctcgggcgt 114668 Query: 378 ggagagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgtt 437 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 114667 ggagagcgaggtggagccggccatggcgccctccatgaactcggcctggacctccatgtt 114608 Query: 438 gacgaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggc 497 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 114607 gacgaactggcgctcgaagttgtccatggtctcggacatcttctgcaggttccccgtggc 114548 Query: 498 gagggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatctt 557 ||| | ||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 114547 gagcgcggagtcgagcgacttgacgatgttggccatggacttgccgatgacctgcatctt 114488 Query: 558 ggccctgcgtgtcgaggcg 576 | |||| ||||||||||| Sbjct: 114487 cg-cctgggtgtcgaggcg 114470
>dbj|AK104266.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G07, full insert sequence Length = 1020 Score = 446 bits (225), Expect = e-122 Identities = 342/379 (90%), Gaps = 4/379 (1%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgac---ctt 257 ||||||||||||||| |||||||| |||||||||| ||||||||| || || || ||| Sbjct: 725 tcagccgcgggccttaagctcagccaggcggcgggagaggtcgtcttcatcaacagcctt 666 Query: 258 ctccttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagac 317 |||||| |||||||| || || |||||||| ||||||||||| || | || |||||||| Sbjct: 665 ctccttctccttggcagctggtatggcgtgagcggcggcctgcggcaacccaacggagac 606 Query: 318 ctcgaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgt 377 ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 605 ctcaaggccgtagtcgtcggcgacttgctgcatgaggctgttgacctcggtctcgggcgt 546 Query: 378 ggagagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgtt 437 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 ggagagcgaggtggagccggccatggcgccctccatgaactcggcctggacctccatgtt 486 Query: 438 gacgaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggc 497 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 485 gacgaactggcgctcgaagttgtccatggtctcggacatcttctgcaggttccccgtggc 426 Query: 498 gagggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatctt 557 ||| | ||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 425 gagcgcggagtcgagcgacttgacgatgttggccatggacttgccgatgacctgcatctt 366 Query: 558 ggccctgcgtgtcgaggcg 576 | |||| ||||||||||| Sbjct: 365 cg-cctgggtgtcgaggcg 348
>dbj|AK099061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155P17, full insert sequence Length = 1009 Score = 446 bits (225), Expect = e-122 Identities = 342/379 (90%), Gaps = 4/379 (1%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgac---ctt 257 ||||||||||||||| |||||||| |||||||||| ||||||||| || || || ||| Sbjct: 726 tcagccgcgggccttaagctcagccaggcggcgggagaggtcgtcttcatcaacagcctt 667 Query: 258 ctccttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagac 317 |||||| |||||||| || || |||||||| ||||||||||| || | || |||||||| Sbjct: 666 ctccttctccttggcagctggtatggcgtgagcggcggcctgcggcaacccaacggagac 607 Query: 318 ctcgaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgt 377 ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 606 ctcaaggccgtagtcgtcggcgacttgctgcatgaggctgttgacctcggtctcgggcgt 547 Query: 378 ggagagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgtt 437 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 ggagagcgaggtggagccggccatggcgccctccatgaactcggcctggacctccatgtt 487 Query: 438 gacgaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggc 497 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 486 gacgaactggcgctcgaagttgtccatggtctcggacatcttctgcaggttccccgtggc 427 Query: 498 gagggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatctt 557 ||| | ||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 426 gagcgcggagtcgagcgacttgacgatgttggccatggacttgccgatgacctgcatctt 367 Query: 558 ggccctgcgtgtcgaggcg 576 | |||| ||||||||||| Sbjct: 366 cg-cctgggtgtcgaggcg 349
>dbj|AK061733.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C12, full insert sequence Length = 1100 Score = 446 bits (225), Expect = e-122 Identities = 342/379 (90%), Gaps = 4/379 (1%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtcctcgtcgac---ctt 257 ||||||||||||||| |||||||| |||||||||| ||||||||| || || || ||| Sbjct: 796 tcagccgcgggccttaagctcagccaggcggcgggagaggtcgtcttcatcaacagcctt 737 Query: 258 ctccttgtccttggcggcggggatggcgtgtgcggcggcctggggtaggccgacggagac 317 |||||| |||||||| || || |||||||| ||||||||||| || | || |||||||| Sbjct: 736 ctccttctccttggcagctggtatggcgtgagcggcggcctgcggcaacccaacggagac 677 Query: 318 ctcgaggccgtagtcgtcggcgacctgctgcatgagggagttgacctcggtctcgggcgt 377 ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 676 ctcaaggccgtagtcgtcggcgacttgctgcatgaggctgttgacctcggtctcgggcgt 617 Query: 378 ggagagggaggtggaacctgccatggcgccctccatgaactcggcctggacctccatgtt 437 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 ggagagcgaggtggagccggccatggcgccctccatgaactcggcctggacctccatgtt 557 Query: 438 gacgaactggcgctcgaagttgtccatggtctcggacatcttctggaggttgccggtggc 497 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 556 gacgaactggcgctcgaagttgtccatggtctcggacatcttctgcaggttccccgtggc 497 Query: 498 gagggaggagtcgagcgacttgacgatgttgcccatggactttccgatggcctgcatctt 557 ||| | ||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 496 gagcgcggagtcgagcgacttgacgatgttggccatggacttgccgatgacctgcatctt 437 Query: 558 ggccctgcgtgtcgaggcg 576 | |||| ||||||||||| Sbjct: 436 cg-cctgggtgtcgaggcg 419
>gb|AY217740.1| Nicotiana benthamiana putative developmental protein mRNA, complete cds Length = 875 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||| ||||| || || || ||||| || || ||||| ||||||| |||||||| || Sbjct: 522 ctccataaactcagcttgaacttccatattaacaaactgttgctcgaacttgtccatcgt 463 Query: 468 ctcggacatcttctggag 485 |||||||||||||||||| Sbjct: 462 ctcggacatcttctggag 445
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtc 245 |||||| ||||||||||||||||| || |||| |||||||||||| Sbjct: 14786012 tcagccacgggccttgagctcagcaagtcggcaggtgaggtcgtc 14785968 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gtcgtcctcgtcgaccttctcctt 263 ||||||| |||||||||||||||| Sbjct: 3292512 gtcgtccccgtcgaccttctcctt 3292535
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtc 245 |||||| ||||||||||||||||| || |||| |||||||||||| Sbjct: 14740295 tcagccacgggccttgagctcagcaagtcggcaggtgaggtcgtc 14740251 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gtcgtcctcgtcgaccttctcctt 263 ||||||| |||||||||||||||| Sbjct: 3292457 gtcgtccccgtcgaccttctcctt 3292480
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146519 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtc 245 |||||| ||||||||||||||||| || |||| |||||||||||| Sbjct: 133874 tcagccacgggccttgagctcagcaagtcggcaggtgaggtcgtc 133918
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133207 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 201 tcagccgcgggccttgagctcagcgaggcggcgggtgaggtcgtc 245 |||||| ||||||||||||||||| || |||| |||||||||||| Sbjct: 32788 tcagccacgggccttgagctcagcaagtcggcaggtgaggtcgtc 32832
>ref|NM_105962.2| Arabidopsis thaliana unknown protein AT1G73040 mRNA, complete cds Length = 1201 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactg 446 |||||||||||| || |||||||||||||| || ||||| Sbjct: 1132 ctccatgaactcagcttggacctccatgttcacaaactg 1170
>ref|NM_105961.2| Arabidopsis thaliana unknown protein AT1G73030 mRNA, complete cds Length = 998 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 520 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 461 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 460 ctctgacatcttctg 446
>gb|AY081673.1| Arabidopsis thaliana similar to developmental protein DG1118 (At1g73030) mRNA, complete cds Length = 692 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 408 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 349 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 348 ctctgacatcttctg 334
>gb|AY059851.1| Arabidopsis thaliana Highly similar to developmental protein DG1118 (At1g73030; F3N23.23) mRNA, complete cds Length = 952 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 520 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 461 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 460 ctctgacatcttctg 446
>emb|BX816668.1|CNS0ABMG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 865 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 503 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 444 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 443 ctctgacatcttctg 429
>emb|BX818756.1|CNS0AB5K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL9ZH06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 935 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 481 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 422 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 421 ctctgacatcttctg 407
>gb|AY084868.1| Arabidopsis thaliana clone 119909 mRNA, complete sequence Length = 950 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 517 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 458 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 457 ctctgacatcttctg 443
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 314 agacctcgaggccgtagtcgtcggcga 340 |||||||||||||| |||||||||||| Sbjct: 1569898 agacctcgaggccggagtcgtcggcga 1569924
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 408 ctccatgaactcggcctggacctccatgttgacgaactggcgctcgaagttgtccatggt 467 |||||||||||| || |||||||||||||| || ||||| |||||| ||||| || Sbjct: 77216 ctccatgaactcagcttggacctccatgttcacaaactgcttctcgaatgaatccattgt 77157 Query: 468 ctcggacatcttctg 482 ||| ||||||||||| Sbjct: 77156 ctctgacatcttctg 77142
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 314 agacctcgaggccgtagtcgtcggcga 340 |||||||||||||| |||||||||||| Sbjct: 1245768 agacctcgaggccggagtcgtcggcga 1245794
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 cctgccatggcgccctccatg 414 ||||||||||||||||||||| Sbjct: 1079094 cctgccatggcgccctccatg 1079074 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ggccgtagtcgtcggcgacct 343 ||||||||||||||||||||| Sbjct: 601753 ggccgtagtcgtcggcgacct 601773
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 gcgaggcggcgggtgaggtcg 243 ||||||||||||||||||||| Sbjct: 968811 gcgaggcggcgggtgaggtcg 968831
>ref|NM_187324.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1415 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ggaggttgccggtggcgagg 501 |||||||||||||||||||| Sbjct: 566 ggaggttgccggtggcgagg 547
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ccttgtccttggcggcggggatgg 283 ||||||| |||||||||||||||| Sbjct: 753574 ccttgtctttggcggcggggatgg 753597
>ref|XM_382202.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02026.1) partial mRNA Length = 5715 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 tcgtcgaccttctccttgtccttg 270 ||||||||||| |||||||||||| Sbjct: 2366 tcgtcgaccttttccttgtccttg 2343
>ref|XM_571355.1| Cryptococcus neoformans var. neoformans JEC21 Pol II transcription elongation factor (CNF02620) partial mRNA Length = 3996 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 ccttgtccttggcggcggggatgg 283 ||||||| |||||||||||||||| Sbjct: 2452 ccttgtctttggcggcggggatgg 2429
>ref|XM_502562.1| Yarrowia lipolytica CLIB122, YALI0D08184g predicted mRNA Length = 1947 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cctcgtcgaccttctccttg 264 |||||||||||||||||||| Sbjct: 1687 cctcgtcgaccttctccttg 1668
>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two novel genes (FLJ36774) and five CpG islands, complete sequence Length = 158335 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ggagagggaggtggaacctg 397 |||||||||||||||||||| Sbjct: 131592 ggagagggaggtggaacctg 131573
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 cgtagtcgtcggcgacctgctgca 349 ||||||||||||| |||||||||| Sbjct: 962139 cgtagtcgtcggcaacctgctgca 962162
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 agtcgagcgacttgacgatgttgc 529 ||||||||| |||||||||||||| Sbjct: 120194 agtcgagcggcttgacgatgttgc 120171
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 gttgccggtggcgagggagg 505 |||||||||||||||||||| Sbjct: 300218 gttgccggtggcgagggagg 300199
>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence Length = 199866 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 atggagaagcgagtgaacat 162 |||||||||||||||||||| Sbjct: 163529 atggagaagcgagtgaacat 163548
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 511 agcgacttgacgatgttgcccatg 534 ||||||||| |||||||||||||| Sbjct: 1842805 agcgacttggcgatgttgcccatg 1842828
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ggaggttgccggtggcgagg 501 |||||||||||||||||||| Sbjct: 17443488 ggaggttgccggtggcgagg 17443469
>gb|AE004882.1| Pseudomonas aeruginosa PAO1, section 443 of 529 of the complete genome Length = 12294 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ccttgtccttggcggcgggg 279 |||||||||||||||||||| Sbjct: 2265 ccttgtccttggcggcgggg 2246
>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0434A03 Length = 146505 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ggaggttgccggtggcgagg 501 |||||||||||||||||||| Sbjct: 111712 ggaggttgccggtggcgagg 111693
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tctccttgtccttggcggcg 276 |||||||||||||||||||| Sbjct: 2193413 tctccttgtccttggcggcg 2193394
>gb|AF068696.1|AF068696 Trypanosoma brucei rhodesiense ESAG 3-c pseudogene, partial sequence Length = 2031 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 catcttggccctgcgtgtcg 571 |||||||||||||||||||| Sbjct: 781 catcttggccctgcgtgtcg 762
>dbj|AK063422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C06, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ggaggttgccggtggcgagg 501 |||||||||||||||||||| Sbjct: 566 ggaggttgccggtggcgagg 547
>dbj|AP002754.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-855O10, complete sequence Length = 185766 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tggagagggaggtggaacctgcca 400 ||||||||||||||| |||||||| Sbjct: 133620 tggagagggaggtggcacctgcca 133597
>dbj|AP002380.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-467L20, complete sequence Length = 188788 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tggagagggaggtggaacctgcca 400 ||||||||||||||| |||||||| Sbjct: 30707 tggagagggaggtggcacctgcca 30684
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gtcgtcctcgtcgaccttctcctt 263 ||||||| |||||||||||||||| Sbjct: 82898 gtcgtccccgtcgaccttctcctt 82921
>gb|AC004770.1|AC004770 Homo sapiens chromosome 11, BAC CIT-HSP-311e8 (BC269730) containing the hFEN1 gene, complete sequence Length = 185035 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tggagagggaggtggaacctgcca 400 ||||||||||||||| |||||||| Sbjct: 170611 tggagagggaggtggcacctgcca 170634
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cctcgtcgaccttctccttg 264 |||||||||||||||||||| Sbjct: 1043864 cctcgtcgaccttctccttg 1043883
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gaactcggcctggacctcca 433 |||||||||||||||||||| Sbjct: 3236360 gaactcggcctggacctcca 3236379
>dbj|AB039603.1| Pseudomonas mendocina rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, strain:IMV B-171 Length = 810 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 241 tcgtcctcgtcgaccttctccttgtccttggc 272 |||||||| ||| |||| |||||||||||||| Sbjct: 275 tcgtcctcttcgtccttttccttgtccttggc 244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,964,563 Number of Sequences: 3902068 Number of extensions: 3964563 Number of successful extensions: 89163 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88100 Number of HSP's gapped (non-prelim): 1053 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)