ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2o01 |
|---|---|
| Clone Library Name | barley_pub |
>RS10C_ARATH (Q9LTF2) 40S ribosomal protein S10-3| Length = 179 Score = 124 bits (312), Expect = 2e-28 Identities = 66/124 (53%), Positives = 75/124 (60%) Frame = -1 Query: 649 AKHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 AKHP +D NL+VIKLMQSFKSKEYVRETF+W HYYW+LTN+GIEFLRT+LNLPS++VP Sbjct: 30 AKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPA 89 Query: 469 TLKKSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFAGEKGGAP 290 TLKKSAK +F GEKGGAP Sbjct: 90 TLKKSAK--PGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAP 147 Query: 289 ADYQ 278 ADYQ Sbjct: 148 ADYQ 151
>RS10_ORYSA (Q9AYP4) 40S ribosomal protein S10| Length = 183 Score = 122 bits (305), Expect = 1e-27 Identities = 66/124 (53%), Positives = 73/124 (58%) Frame = -1 Query: 649 AKHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 AKHPQ+D NL+VIK MQSFKSKEYVRETFSWQ+YYWYLTNDGIE L +LNLPSEIVP Sbjct: 30 AKHPQIDVPNLQVIKFMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLLNYLNLPSEIVPA 89 Query: 469 TLKKSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFAGEKGGAP 290 TLKKSA+ DF GEKGGAP Sbjct: 90 TLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAP 149 Query: 289 ADYQ 278 A++Q Sbjct: 150 AEFQ 153
>RS10A_ARATH (Q9SW09) 40S ribosomal protein S10-1| Length = 177 Score = 120 bits (300), Expect = 5e-27 Identities = 53/66 (80%), Positives = 61/66 (92%) Frame = -1 Query: 646 KHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 KHP +D NL+VIKLMQSFKSKEYVRETF+W HYYW+LTN+GIEFLRT+LNLPS++VP T Sbjct: 31 KHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPAT 90 Query: 466 LKKSAK 449 LKKSAK Sbjct: 91 LKKSAK 96
>RS10B_ARATH (Q9FFS8) 40S ribosomal protein S10-2| Length = 180 Score = 109 bits (273), Expect = 6e-24 Identities = 50/67 (74%), Positives = 60/67 (89%), Gaps = 1/67 (1%) Frame = -1 Query: 646 KHPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 +HP +++ NL+VIKLMQSFKSKEYVRETF+W HYYW+LTN+GI+FLRT+LNLPSEIVP Sbjct: 31 QHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPA 90 Query: 469 TLKKSAK 449 TLKK K Sbjct: 91 TLKKQQK 97
>RS10_SPOFR (Q962R9) 40S ribosomal protein S10| Length = 158 Score = 94.0 bits (232), Expect = 3e-19 Identities = 42/67 (62%), Positives = 55/67 (82%), Gaps = 1/67 (1%) Frame = -1 Query: 646 KHPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 KHP ++ NL+VIK MQS KS+ YV+E F+W+H+YWYLTN+GIE+LR FL+LP EIVP Sbjct: 31 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 90 Query: 469 TLKKSAK 449 TLK+S + Sbjct: 91 TLKRSVR 97
>RS10_DICDI (O77082) 40S ribosomal protein S10| Length = 153 Score = 90.9 bits (224), Expect = 3e-18 Identities = 37/67 (55%), Positives = 57/67 (85%), Gaps = 1/67 (1%) Frame = -1 Query: 649 AKHPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVP 473 AKHPQ++ SNL+V+++++SFKS+++V ETF+WQ+YYW LT +GI++LRT+L +P +VP Sbjct: 30 AKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPESVVP 89 Query: 472 NTLKKSA 452 T+KK A Sbjct: 90 ATMKKQA 96
>RS10_LUMRU (O77302) 40S ribosomal protein S10| Length = 156 Score = 89.7 bits (221), Expect = 7e-18 Identities = 38/66 (57%), Positives = 50/66 (75%) Frame = -1 Query: 646 KHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 KH ++D NL VI+ MQS S+ YV+E F W+HYYWYL N+GI++LR FL+LP EIVP T Sbjct: 31 KHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPAT 90 Query: 466 LKKSAK 449 LK+ + Sbjct: 91 LKRQTR 96
>RS10_XENLA (Q07254) 40S ribosomal protein S10| Length = 165 Score = 89.0 bits (219), Expect = 1e-17 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 3/67 (4%) Frame = -1 Query: 646 KHPQV---DASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIV 476 KHP++ + NL V+K MQS KS+ YV+E F+W+H+YWYLTN+GI++LR FL+LP EIV Sbjct: 31 KHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIV 90 Query: 475 PNTLKKS 455 P TL++S Sbjct: 91 PATLRRS 97
>RS10B_DROME (Q9VWG3) 40S ribosomal protein S10b| Length = 160 Score = 89.0 bits (219), Expect = 1e-17 Identities = 40/67 (59%), Positives = 55/67 (82%), Gaps = 1/67 (1%) Frame = -1 Query: 646 KHPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 KHP++++ NL VIK MQS S+ V+E F+W+HYYWYLTN+GIE LR++L+LP EIVP+ Sbjct: 31 KHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPS 90 Query: 469 TLKKSAK 449 TLK+ A+ Sbjct: 91 TLKRPAR 97
>RS10_ICTPU (Q90YR4) 40S ribosomal protein S10| Length = 166 Score = 87.8 bits (216), Expect = 2e-17 Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 3/70 (4%) Frame = -1 Query: 649 AKHPQV---DASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEI 479 AKHP++ + NL V+K MQS KS YV+E F+W+H+YWYLTN+GI++LR FL+LP EI Sbjct: 30 AKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEI 89 Query: 478 VPNTLKKSAK 449 VP TL++ + Sbjct: 90 VPATLRRQTR 99
>RS10_RAT (P63326) 40S ribosomal protein S10| Length = 165 Score = 87.8 bits (216), Expect = 2e-17 Identities = 38/67 (56%), Positives = 54/67 (80%), Gaps = 3/67 (4%) Frame = -1 Query: 646 KHPQV---DASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIV 476 KHP++ + NL V+K MQS KS+ YV+E F+W+H+YWYLTN+GI++LR +L+LP EIV Sbjct: 31 KHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIV 90 Query: 475 PNTLKKS 455 P TL++S Sbjct: 91 PATLRRS 97
>RS10_MOUSE (P63325) 40S ribosomal protein S10| Length = 165 Score = 87.8 bits (216), Expect = 2e-17 Identities = 38/67 (56%), Positives = 54/67 (80%), Gaps = 3/67 (4%) Frame = -1 Query: 646 KHPQV---DASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIV 476 KHP++ + NL V+K MQS KS+ YV+E F+W+H+YWYLTN+GI++LR +L+LP EIV Sbjct: 31 KHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIV 90 Query: 475 PNTLKKS 455 P TL++S Sbjct: 91 PATLRRS 97
>RS10_HUMAN (P46783) 40S ribosomal protein S10| Length = 165 Score = 87.8 bits (216), Expect = 2e-17 Identities = 38/67 (56%), Positives = 54/67 (80%), Gaps = 3/67 (4%) Frame = -1 Query: 646 KHPQV---DASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIV 476 KHP++ + NL V+K MQS KS+ YV+E F+W+H+YWYLTN+GI++LR +L+LP EIV Sbjct: 31 KHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIV 90 Query: 475 PNTLKKS 455 P TL++S Sbjct: 91 PATLRRS 97
>RS10A_DROME (Q9VB14) 40S ribosomal protein S10a| Length = 163 Score = 80.9 bits (198), Expect = 3e-15 Identities = 36/67 (53%), Positives = 53/67 (79%), Gaps = 1/67 (1%) Frame = -1 Query: 646 KHPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 KH ++D NL+VIK+MQS S+ +V+E F+W+H+YW LTN+GIE LR +L+LP EIVP+ Sbjct: 31 KHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPS 90 Query: 469 TLKKSAK 449 TL ++ + Sbjct: 91 TLTQTTR 97
>RS10B_YEAST (P46784) 40S ribosomal protein S10-B| Length = 105 Score = 80.5 bits (197), Expect = 4e-15 Identities = 35/61 (57%), Positives = 45/61 (73%) Frame = -1 Query: 649 AKHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 AKH ++D NL VIK +QS SK YV+ FSWQ+YY+ LT +G+E+LR +LNLP IVP Sbjct: 30 AKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPG 89 Query: 469 T 467 T Sbjct: 90 T 90
>RS10A_YEAST (Q08745) 40S ribosomal protein S10-A| Length = 105 Score = 80.5 bits (197), Expect = 4e-15 Identities = 35/61 (57%), Positives = 45/61 (73%) Frame = -1 Query: 649 AKHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPN 470 AKH ++D NL VIK +QS SK YV+ FSWQ+YY+ LT +G+E+LR +LNLP IVP Sbjct: 30 AKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPG 89 Query: 469 T 467 T Sbjct: 90 T 90
>PLEC1_MOUSE (Q9QXS1) Plectin-1 (PLTN) (PCN) (Fragment)| Length = 964 Score = 77.0 bits (188), Expect = 4e-14 Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 1/63 (1%) Frame = -1 Query: 643 HPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 HP V +NL+V++ M S K++ VRETF+W H+YWYLTN+GI+ LR +L+LP EIVP + Sbjct: 37 HPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPAS 96 Query: 466 LKK 458 L++ Sbjct: 97 LQR 99
>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)| Length = 4687 Score = 77.0 bits (188), Expect = 4e-14 Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 1/63 (1%) Frame = -1 Query: 643 HPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 HP V +NL+V++ M S K++ VRETF+W H+YWYLTN+GI+ LR +L+LP EIVP + Sbjct: 37 HPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPAS 96 Query: 466 LKK 458 L++ Sbjct: 97 LQR 99
>RS10B_SCHPO (O13614) 40S ribosomal protein S10-B| Length = 147 Score = 73.2 bits (178), Expect = 6e-13 Identities = 30/66 (45%), Positives = 48/66 (72%) Frame = -1 Query: 646 KHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 KHP+V NL+VIK QS S+ Y++ ++W +Y+ LTN+G+E+LR +L+LP+E+VP T Sbjct: 31 KHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPAT 90 Query: 466 LKKSAK 449 K+ + Sbjct: 91 HKRQVR 96
>RS10A_SCHPO (O14112) 40S ribosomal protein S10-A| Length = 144 Score = 73.2 bits (178), Expect = 6e-13 Identities = 30/66 (45%), Positives = 48/66 (72%) Frame = -1 Query: 646 KHPQVDASNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 KHP+V NL+VIK QS S+ Y++ ++W +Y+ LTN+G+E+LR +L+LP+E+VP T Sbjct: 31 KHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPAT 90 Query: 466 LKKSAK 449 K+ + Sbjct: 91 HKRQVR 96
>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)| Length = 4684 Score = 70.1 bits (170), Expect = 5e-12 Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%) Frame = -1 Query: 643 HPQVDA-SNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNT 467 HP V +NL+V++ M S +++ VRETF+W H++WYLTN+GI LR +L+LP EIV + Sbjct: 37 HPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFFWYLTNEGIAHLRQYLHLPPEIVAAS 96 Query: 466 LKK 458 L++ Sbjct: 97 LQR 99
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 39.3 bits (90), Expect = 0.010 Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 13/72 (18%) Frame = +1 Query: 208 QNRTCHRRLHGQRAWH------------HQHP*KLAGSQQELHPSHQQNHQEHHV-GLLC 348 Q++T H LH H HQHP P HQQNH HH L Sbjct: 111 QDQTPHHHLHSHPHQHQTLPPHHPYPHQHQHP----AHHPHPQPHHQQNHPHHHSHSHLH 166 Query: 349 NHPCHHT*ACHP 384 HP HH + HP Sbjct: 167 AHPAHHQTSPHP 178
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 38.5 bits (88), Expect = 0.017 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 13/72 (18%) Frame = +1 Query: 208 QNRTCHRRLHGQRAWH------------HQHP*KLAGSQQELHPSHQQNHQEHHV-GLLC 348 Q++T H +H H HQHP P HQQNH HH L Sbjct: 266 QDQTPHHHMHSHPHQHQTLPPHHPYPHQHQHP----AHHPHPQPHHQQNHPHHHSHSHLH 321 Query: 349 NHPCHHT*ACHP 384 HP HH + HP Sbjct: 322 AHPAHHQTSPHP 333
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 34.7 bits (78), Expect = 0.25 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 181 CSFFTPWKVQNRTCHRR--LHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEH 330 C++ P+ Q++ ++ H Q A QH + +Q LH SHQQ Q+H Sbjct: 6 CNYLNPYAQQHQAQQQQHAQHQQHAQQQQHHLHMQQAQHHLHLSHQQAQQQH 57
>YJI3_YEAST (P47030) Hypothetical 68.8 kDa protein in EXO70-ARP4 intergenic| region Length = 604 Score = 32.7 bits (73), Expect = 0.95 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 307 HQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDPWGGHR 417 H +HQ H+ H HHT + H NE+ PW HR Sbjct: 399 HHHHHQLHNPNSHHLHTHHHT-SSHKFNEDKPWKSHR 434
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQN--EE 396 H H HH H L H +H +H+EHH H HH H + Sbjct: 101 HHHHHHHPPHHHHH---LGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHH 157 Query: 397 DPWGGH 414 PW H Sbjct: 158 HPWFHH 163 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/53 (32%), Positives = 19/53 (35%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACH 381 H HG HH H G H H +H HH +H HH A H Sbjct: 228 HHHHHGHHHHHHHHH----GHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 276 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/53 (32%), Positives = 19/53 (35%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACH 381 H HG HH H G H H +H HH +H HH A H Sbjct: 218 HHHHHGHHHHHHHHH----GHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHH 266 Score = 31.2 bits (69), Expect = 2.8 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Frame = +1 Query: 253 HHQHP*KLAGSQQELHPSHQQNHQ-EHHVGLLCNHPCHHT*ACHPQNEE 396 HH HP HP H +H HH L +H HH A H +EE Sbjct: 94 HHHHP----------HPHHHHHHHPPHHHHHLGHHHHHHHAAHHHHHEE 132 Score = 31.2 bits (69), Expect = 2.8 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Frame = +1 Query: 235 HGQRAWHHQHP*KLAGSQQELHPSHQQNH----QEHHVGLLCNHPCHHT*ACHPQNEEDP 402 H HH HP ++ P H+++H +EHH H HH H + P Sbjct: 56 HLHEEHHHHHP------EEHHEPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPP 109 Query: 403 WGGHRVG 423 H +G Sbjct: 110 HHHHHLG 116 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/64 (28%), Positives = 21/64 (32%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDP 402 H H A HH H A H +H HH G +H HH H + D Sbjct: 195 HHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDA 254 Query: 403 WGGH 414 H Sbjct: 255 HHHH 258 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/64 (28%), Positives = 22/64 (34%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDP 402 H H A HH H + H H +H HH +H HH A H + D Sbjct: 256 HHHHHHHDAHHHHH--HHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHDA 313 Query: 403 WGGH 414 H Sbjct: 314 HHHH 317 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/53 (30%), Positives = 19/53 (35%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACH 381 H HG HH H + H H +H HH +H HH A H Sbjct: 238 HHHHHGHHHHHHHHH----DAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 286 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/64 (26%), Positives = 20/64 (31%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDP 402 H H A HH H H +H HH G +H HH H + D Sbjct: 205 HHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDA 264 Query: 403 WGGH 414 H Sbjct: 265 HHHH 268
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELH------PSHQQNHQEHH 333 HR +H + H+H Q H P HQQ HQ HH Sbjct: 7 HRHMHSPSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHH 49 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +1 Query: 193 TPWKVQNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHV 336 +P Q+ + + Q HHQH QQ H HQQ Q+H V Sbjct: 12 SPSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHHHQQQQQQHPV 59
>DTX_DROME (Q23985) Protein deltex| Length = 738 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 235 HGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHH 366 H + HQH + QQ H QQ HQ+ + +H HH Sbjct: 259 HQVQQQQHQHQHQQQQQQQHHHQHQQQQHQQQQQHQMQHHQIHH 302 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +1 Query: 82 SSRCSQNSNINRLDSTQRLHWI*-----RPVGCSHLLKCSFFTPWKVQNRTCHRRLHGQR 246 +S SQ + + +L T+ LH + P+ SH ++ + Q++ H++ Q+ Sbjct: 225 ASVSSQYNTLPKLGDTKSLHRVPMTRQQHPLPTSHQVQ-------QQQHQHQHQQQQ-QQ 276 Query: 247 AWHHQHP*KLAGSQQELHPSHQQNHQEHH 333 HHQH QQ+ H QQ+ +HH Sbjct: 277 QHHHQH-------QQQQHQQQQQHQMQHH 298
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +1 Query: 211 NRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQ--EHHVG 339 +R HR H ++ HH + +QQ+ H HQQ Q +H VG Sbjct: 535 HREHHRENHHNQSHHHMQQQQQHQNQQQQHQQHQQLQQQLQHTVG 579
>SOS_DROME (P26675) Protein son of sevenless| Length = 1596 Score = 30.0 bits (66), Expect = 6.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 286 QQELHPSHQQNHQEHHVGLLCNHPCHH 366 QQ+ HP+ H +HH L +HP H Sbjct: 1515 QQQTHPAIYSQHHQHHATHLPHHPHQH 1541
>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)| Length = 623 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Frame = +1 Query: 235 HGQRAWHHQHP*KLAGSQQELHPSH--QQNHQEHHVGLLCNHP 357 H HH HP Q LH H QQ Q+ LL HP Sbjct: 76 HHHHHHHHSHPHHQLAQQTGLHSHHTMQQQLQQQQQSLLLQHP 118
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = +1 Query: 223 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQ--EHHVGLLCNHPCHH 366 H + Q HHQ + QQ+ H HQQ Q +HH H HH Sbjct: 158 HHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHH 207
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = +1 Query: 208 QNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPS----HQQNHQEHH 333 Q + ++ H Q+ H QH QQ+LH H Q HQ HH Sbjct: 1032 QQQAAAQQQHQQQQQHQQHQ---QHQQQQLHSPLHHHHHQGHQSHH 1074 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,591,255 Number of Sequences: 219361 Number of extensions: 1441390 Number of successful extensions: 4875 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4379 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4714 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
