ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y284_METJA (Q57732) Hypothetical protein MJ0284 37 0.038
2ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein) 30 7.9
3ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L) 30 7.9
4AMHR2_HUMAN (Q16671) Anti-Muellerian hormone type-2 receptor pre... 30 7.9
5PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC ... 30 7.9
6ATRN_RAT (Q99J86) Attractin precursor (Zitter protein) 30 7.9

>Y284_METJA (Q57732) Hypothetical protein MJ0284|
          Length = 219

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 21/76 (27%), Positives = 41/76 (53%)
 Frame = -3

Query: 636 KRKGADMEFLSMGLKVASQAVYSLHKTSTREYIKKSALRNCNAISAEVLCELRYDLPRTY 457
           ++K AD  FL   L++    +Y++H   T++++ K        I+   + E  + +P  Y
Sbjct: 134 QKKHADRVFLDKALEIGD-IIYTIHNYPTKDFVIKYVEDKGGKITH--IYEAFFRIPAIY 190

Query: 456 RFHKQKELDIAVDLWR 409
            FHK+K ++I V ++R
Sbjct: 191 EFHKKKVVEIPVVIFR 206



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>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)|
          Length = 1428

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 181  NFTAPCQGWLAFSLYQYFL---QCMILFLSCWISGLRKNSVEFKVK 53
            NFT P +  +AFS +  F+   Q  + F SC++S L   +V +K+K
Sbjct: 1258 NFTWPIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIK 1303



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>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)|
          Length = 1429

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 181  NFTAPCQGWLAFSLYQYFL---QCMILFLSCWISGLRKNSVEFKVK 53
            NFT P +  +AFS +  F+   Q  + F SC++S L   +V +K+K
Sbjct: 1259 NFTWPIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIK 1304



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>AMHR2_HUMAN (Q16671) Anti-Muellerian hormone type-2 receptor precursor (EC|
           2.7.11.30) (Anti-Muellerian hormone type II receptor)
           (AMH type II receptor) (MIS type II receptor) (MISRII)
           (MRII)
          Length = 573

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 432 QAPSVCGTCRSVVDRSEAHTELQH*LRCSYARLTS*CILSWKSCVENTLLEMQ 590
           +AP V G+ +++ +  +  TEL   +RC Y+R    C   W    +   +EMQ
Sbjct: 28  EAPGVRGSTKTLGELLDTGTELPRAIRCLYSRC---CFGIWNLTQDRAQVEMQ 77



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>PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 359

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 233 ERQANPGGLAAMPWVAMELYSTLPGLAGV--LSVPVLPSVYDL 111
           E  A PG      W + E Y  L GLAG   + VP+    +DL
Sbjct: 100 EATAEPGAEVVYAWRSFEAYPLLTGLAGATPIHVPLREETHDL 142



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>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)|
          Length = 1432

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 181  NFTAPCQGWLAFSLYQYFL---QCMILFLSCWISGLRKNSVEFKVK 53
            NFT P +  +AFS +  F+   Q  + F SC++S L   +V +K+K
Sbjct: 1262 NFTWPIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIK 1307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,089,974
Number of Sequences: 219361
Number of extensions: 2181805
Number of successful extensions: 5226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5222
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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