ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2n23 |
|---|---|
| Clone Library Name | barley_pub |
>KEULE_ARATH (Q9C5X3) SNARE-interacting protein KEULE| Length = 666 Score = 129 bits (324), Expect = 3e-30 Identities = 63/83 (75%), Positives = 77/83 (92%), Gaps = 1/83 (1%) Frame = -3 Query: 447 DGYSSDSVLKHASSDFQKHGQRIFVFVIGGAXRSELRXAHKLTSKLKREVILGSSSLDDP 268 DGYSSDSVL+HASSDF+K GQRIFVF++GGA RSEL+ HKL++KLKREVILGS+SLDDP Sbjct: 584 DGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVILGSTSLDDP 643 Query: 267 PQFITKLKMMSA-EELTLDDLHI 202 PQFITKLK+++A ++L+LDDL I Sbjct: 644 PQFITKLKLLTANDDLSLDDLQI 666
>SEC1B_ARATH (Q9SZ77) Protein transport Sec1b (AtSec1b)| Length = 662 Score = 103 bits (258), Expect = 2e-22 Identities = 54/83 (65%), Positives = 65/83 (78%), Gaps = 1/83 (1%) Frame = -3 Query: 447 DGYSSDSVLKHASSDFQKHGQRIFVFVIGGAXRSELRXAHKLTSKLKREVILGSSSLDDP 268 DGY SDSVL ASS F++ GQRIFVF++GGA RSELR HKLT KL REVILGSSS DP Sbjct: 580 DGYFSDSVLGRASSGFKRKGQRIFVFIVGGATRSELRVCHKLTEKLDREVILGSSSFLDP 639 Query: 267 PQFITKLKMMS-AEELTLDDLHI 202 F+TK+K ++ EE++LDD+ I Sbjct: 640 LTFLTKMKQLNEEEEISLDDIVI 662
>SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a)| Length = 611 Score = 81.6 bits (200), Expect = 8e-16 Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 2/67 (2%) Frame = -3 Query: 447 DGYSSDSVLKHASSDFQKHG--QRIFVFVIGGAXRSELRXAHKLTSKLKREVILGSSSLD 274 DGYS S+L + DF G +RIFVF+IGGA RSELR HKLTS L+REV+LGS+S D Sbjct: 538 DGYSRHSILHN---DFLFFGPFERIFVFIIGGATRSELRVCHKLTSSLRREVVLGSTSFD 594 Query: 273 DPPQFIT 253 DPPQ+IT Sbjct: 595 DPPQYIT 601
>ROP_DROME (Q07327) Protein ROP| Length = 597 Score = 43.5 bits (101), Expect = 2e-04 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Frame = -3 Query: 396 KHGQRIFVFVIGGAXRSELRXAHKLTSKLKR-EVILGSSSLDDPPQFITKLKMMSAEE 226 K+ R+ VF++GG SE+R A+++T+ ++ EV++GSS + P F++ L +S E+ Sbjct: 540 KNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVLVGSSHILSPEIFLSDLGSLSKED 597
>STXB3_MOUSE (Q60770) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (MUNC-18-3) Length = 592 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Frame = -3 Query: 399 QKHGQRIFVFVIGGAXRSELRXAHKLTSKLKR-EVILGSSSLDDPPQFITKLKMMS 235 +K+G R+ +FVIGG SE+R A++++ K EVI+GS+ + P + + +KM++ Sbjct: 526 RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLN 581
>STXB2_MOUSE (Q64324) Syntaxin-binding protein 2 (UNC-18 homolog 2) (UNC-18B)| (MUSEC1) Length = 593 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 2/53 (3%) Frame = -3 Query: 390 GQRIFVFVIGGAXRSELRXAHKLT--SKLKREVILGSSSLDDPPQFITKLKMM 238 G R+ V+++GG SE+R A+++T ++ K EV++GSS + P +F+ LK + Sbjct: 531 GPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKTL 583
>STXB3_HUMAN (O00186) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (UNC-18-3) (Platelet Sec1 protein) (PSP) Length = 592 Score = 42.4 bits (98), Expect = 5e-04 Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Frame = -3 Query: 399 QKHGQRIFVFVIGGAXRSELRXAHKLTSKLKR-EVILGSSSLDDPPQFITKLKMMS 235 +K+G ++ VFVIGG SE+R A++++ K EVI+GS+ + P + + +KM++ Sbjct: 525 RKNGSKLIVFVIGGITYSEVRGAYEVSQAHKSCEVIIGSTHVLTPKKLLDDIKMLN 580
>STXB2_HUMAN (Q15833) Syntaxin-binding protein 2 (Unc-18 homolog 2) (Unc-18B)| (Unc18-2) Length = 593 Score = 42.0 bits (97), Expect = 7e-04 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 2/53 (3%) Frame = -3 Query: 390 GQRIFVFVIGGAXRSELRXAHKLT--SKLKREVILGSSSLDDPPQFITKLKMM 238 G R+ V+V+GG SE+R A+++T ++ K EV++GSS + P +F+ LK + Sbjct: 531 GPRLIVYVMGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKAL 583
>UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Uncoordinated| protein 18) Length = 591 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Frame = -3 Query: 396 KHGQRIFVFVIGGAXRSELRXAHKLTSKLKR-EVILGSSSLDDPPQFITKLK 244 + G R+ +++IGG SE+R +++T+ K EV++GS + P +F+T L+ Sbjct: 532 RSGPRLIIYIIGGVTFSEMRACYEVTAARKPWEVVIGSDRIITPDKFLTNLR 583
>STXB2_RAT (Q62753) Syntaxin-binding protein 2 (Unc-18 homolog 2) (Unc-18B)| (Unc18-2) Length = 594 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%) Frame = -3 Query: 390 GQRIFVFVIGGAXRSELRXAHKLT--SKLKREVILGSSSLDDPPQFITKLKMM 238 G R+ V+++GG SE+R A+++T ++ K EV++GSS + P +F+ L+ + Sbjct: 532 GPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLRTL 584
>STXB2_CANFA (Q28288) Syntaxin-binding protein 2 (Unc-18 homolog 2) (Unc-18B)| (Unc18-2) Length = 593 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%) Frame = -3 Query: 390 GQRIFVFVIGGAXRSELRXAHKLTSKL--KREVILGSSSLDDPPQFITKLKMM 238 G R+ ++V+GG SE+R A+++T K EV++GSS + P +F+ LK + Sbjct: 531 GPRLIIYVMGGVAMSEMRAAYEVTRATDGKWEVLIGSSHILTPTRFLDDLKTL 583
>STXB1_RAT (P61765) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (rbSec1) (p67) Length = 594 Score = 37.7 bits (86), Expect = 0.013 Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = -3 Query: 396 KHGQRIFVFVIGGAXRSELRXAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 235 + G R+ +F++GG +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>STXB1_MOUSE (O08599) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) Length = 594 Score = 37.7 bits (86), Expect = 0.013 Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = -3 Query: 396 KHGQRIFVFVIGGAXRSELRXAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 235 + G R+ +F++GG +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>STXB1_HUMAN (P61764) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 37.7 bits (86), Expect = 0.013 Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = -3 Query: 396 KHGQRIFVFVIGGAXRSELRXAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 235 + G R+ +F++GG +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>STXB1_BOVIN (P61763) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 37.7 bits (86), Expect = 0.013 Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = -3 Query: 396 KHGQRIFVFVIGGAXRSELRXAHKLT-SKLKREVILGSSSLDDPPQFITKLKMMS 235 + G R+ +F++GG +E+R A+++T + K EV++GS+ + P + + LK ++ Sbjct: 532 RSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLN 586
>SEC1_YEAST (P30619) Protein transport protein SEC1| Length = 724 Score = 35.8 bits (81), Expect = 0.050 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Frame = -3 Query: 411 SSDFQKH--GQRIFVFVIGGAXRSELRXAHKLTSKLKREVILGSSSLDDPPQFITKLKMM 238 SS+ +K+ QR F +VIGG E++ A+ ++ R++ +GS + P +F+ +++ + Sbjct: 580 SSNIKKNIPRQRFFYYVIGGISIPEIKAAYDQSNLKNRDIFIGSDEILTPTKFLDEVERL 639
>HIS4_GEOKA (Q5KVC9) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 31.6 bits (70), Expect = 0.95 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = -3 Query: 387 QRIFVFV-IGGAXRSELRXAHKLTSKLKREVILGSSSLDDPPQFITKL 247 +R+ V V +GG R+E H L + + R VILGS+++ DPP F+ K+ Sbjct: 74 RRLSVHVQVGGGIRTEEDIVHYLENGVAR-VILGSAAISDPP-FVKKM 119
>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3036 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -2 Query: 193 IMHMYSGASSGILLYFGIFFVIVWFV 116 I+H S ASS LLYF +FFV W + Sbjct: 756 ILHAASAASSNGLLYFILFFVAAWCI 781
>HIS4_BACSU (O35006) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = -3 Query: 366 IGGAXRSELRXAHKLTSKLKREVILGSSSLDDPPQFITKLKMMSAEELTL 217 IGG RSE L++ ++R VILGSS++ +PP F+ K+ E++ + Sbjct: 82 IGGGIRSENDVYEYLSAGVER-VILGSSAVSNPP-FVKKMLKQYGEKIAI 129
>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 30.4 bits (67), Expect = 2.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 193 IMHMYSGASSGILLYFGIFFVIVWFV 116 ++H S AS LYF IFFV W++ Sbjct: 756 VLHAASAASCNGFLYFVIFFVAAWYI 781
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.6 bits (65), Expect = 3.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 193 IMHMYSGASSGILLYFGIFFVIVWFV 116 ++H S A+ LLYF IFFV W + Sbjct: 756 VLHAASAANCHGLLYFAIFFVAAWHI 781
>MUTS2_STAHJ (Q4L5E9) MutS2 protein| Length = 783 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +3 Query: 372 KQIYAGHAFGNHSMHASIQNHLNNH 446 +Q+Y H G ++ ++QNHLN H Sbjct: 735 EQVYIIHGKGTGALQKAVQNHLNKH 759
>Y3654_ANASP (Q8YR05) Hypothetical RNA methyltransferase alr3654 (EC 2.1.1.-)| Length = 460 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 134 CDRLVCSTLVASKPHAINLLSCIIFIL 54 CDR+V +L+ASKP I +SC + L Sbjct: 389 CDRIVIESLLASKPARIVYVSCKVATL 415
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 193 IMHMYSGASSGILLYFGIFFVIVWFV 116 I+H S ASS +L F IFF+ W++ Sbjct: 756 ILHAASAASSHGMLCFIIFFIAAWYI 781
>YICG_SHIFL (P0AGM4) UPF0126 inner membrane protein yicG| Length = 205 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/26 (34%), Positives = 21/26 (80%) Frame = +3 Query: 369 QKQIYAGHAFGNHSMHASIQNHLNNH 446 QK++YAG +F + ++ ++Q++++NH Sbjct: 145 QKELYAGVSFASAVLYIALQHYVSNH 170
>YICG_ECOLI (P0AGM2) UPF0126 inner membrane protein yicG| Length = 205 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/26 (34%), Positives = 21/26 (80%) Frame = +3 Query: 369 QKQIYAGHAFGNHSMHASIQNHLNNH 446 QK++YAG +F + ++ ++Q++++NH Sbjct: 145 QKELYAGVSFASAVLYIALQHYVSNH 170
>YICG_ECOL6 (P0AGM3) UPF0126 inner membrane protein yicG| Length = 205 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/26 (34%), Positives = 21/26 (80%) Frame = +3 Query: 369 QKQIYAGHAFGNHSMHASIQNHLNNH 446 QK++YAG +F + ++ ++Q++++NH Sbjct: 145 QKELYAGVSFASAVLYIALQHYVSNH 170
>VPS45_YEAST (P38932) Vacuolar protein sorting-associated protein 45| Length = 577 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = -3 Query: 387 QRIFVFVIGGAXRSELRXAHKL--TSKLKREVILGSSSLDDPPQFITKLK 244 Q + +FVIGG E R H T + V+LG +S+ +++ ++ Sbjct: 525 QDVILFVIGGVTYEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMDSIR 574 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,992,499 Number of Sequences: 219361 Number of extensions: 1071588 Number of successful extensions: 2684 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2676 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
