ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3c22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194623.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase ZRP4 (OSJNBa0023I19.21), mRNA Length = 1101 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Minus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 1052 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 993 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 992 atgccatcgatgtacatcatgaaaacatcaaacaaaa 956
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 1142320 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 1142379 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 1142380 atgccatcgatgtacatcatgaaaacatcaaacaaaa 1142416 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 1119252 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 1119311 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 1119312 atgccatcaacgtacatcatgaaaacatcaaacaaaa 1119348 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 1119405 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 1119464 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 1119465 ttgacacaatcatcatcttgccaagcatgcaaaat 1119499 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 1481988 attatcacctttcctccagc 1482007
>gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, complete sequence Length = 145526 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 26558 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 26617 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 26618 atgccatcgatgtacatcatgaaaacatcaaacaaaa 26654 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 3490 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 3549 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 3550 atgccatcaacgtacatcatgaaaacatcaaacaaaa 3586 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 3643 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 3702 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 3703 ttgacacaatcatcatcttgccaagcatgcaaaat 3737
>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence Length = 157450 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 139773 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 139832 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 139833 atgccatcgatgtacatcatgaaaacatcaaacaaaa 139869 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 116705 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 116764 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 116765 atgccatcaacgtacatcatgaaaacatcaaacaaaa 116801 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 116858 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 116917 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 116918 ttgacacaatcatcatcttgccaagcatgcaaaat 116952
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 1142320 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 1142379 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 1142380 atgccatcgatgtacatcatgaaaacatcaaacaaaa 1142416 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 1119252 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 1119311 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 1119312 atgccatcaacgtacatcatgaaaacatcaaacaaaa 1119348 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 1119405 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 1119464 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 1119465 ttgacacaatcatcatcttgccaagcatgcaaaat 1119499 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 3863252 attatcacctttcctccagc 3863233 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 1481988 attatcacctttcctccagc 1482007
>dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K03, full insert sequence Length = 1483 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Minus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 1088 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 1029 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 1028 atgccatcgatgtacatcatgaaaacatcaaacaaaa 992
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||| ||||||||||| | Sbjct: 1142317 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatactcctctcgctcg 1142376 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || ||||||||||||||||| ||||| ||||||| Sbjct: 1142377 atgccatcgatgtacatcatgaaaacatcaaacaaaa 1142413 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 1119249 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 1119308 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 1119309 atgccatcaacgtacatcatgaaaacatcaaacaaaa 1119345 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 1119402 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 1119461 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 1119462 ttgacacaatcatcatcttgccaagcatgcaaaat 1119496 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 3863173 attatcacctttcctccagc 3863154 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 1481985 attatcacctttcctccagc 1482004
>ref|NM_194620.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase ZRP4 (OSJNBa0023I19.18), mRNA Length = 1101 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 1052 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 993 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 992 atgccatcaacgtacatcatgaaaacatcaaacaaaa 956 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 899 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 840 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 839 ttgacacaatcatcatcttgccaagcatgcaaaat 805
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| ||||| ||||| || |||||||||||| |||| ||||||||||| |||| | Sbjct: 10687876 ttgtagtcactaaatccagcctccaagaaaatcttcttccattcatgctcctcccgctcg 10687935 Query: 190 atcccgtcgatgtacatcatgaagacatc 218 || || ||| ||||||||||||| ||||| Sbjct: 10687936 atgccatcggtgtacatcatgaaaacatc 10687964
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0057I13 Length = 156330 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| ||||| ||||| || |||||||||||| |||| ||||||||||| |||| | Sbjct: 140188 ttgtagtcactaaatccagcctccaagaaaatcttcttccattcatgctcctcccgctcg 140247 Query: 190 atcccgtcgatgtacatcatgaagacatc 218 || || ||| ||||||||||||| ||||| Sbjct: 140248 atgccatcggtgtacatcatgaaaacatc 140276
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| ||||| ||||| || |||||||||||| |||| ||||||||||| |||| | Sbjct: 24494 ttgtagtcactaaatccagcctccaagaaaatcttcttccattcatgctcctcccgctcg 24553 Query: 190 atcccgtcgatgtacatcatgaagacatc 218 || || ||| ||||||||||||| ||||| Sbjct: 24554 atgccatcggtgtacatcatgaaaacatc 24582
>dbj|AK072740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134H21, full insert sequence Length = 1466 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| ||||| ||||| || |||||||||||| |||| ||||||||||| |||| | Sbjct: 1082 ttgtagtcactaaatccagcctccaagaaaatcttcttccattcatgctcctcccgctcg 1023 Query: 190 atcccgtcgatgtacatcatgaagacatc 218 || || ||| ||||||||||||| ||||| Sbjct: 1022 atgccatcggtgtacatcatgaaaacatc 994
>dbj|AK069721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O22, full insert sequence Length = 1269 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 130 ttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgctgg 189 |||||||| || || ||||| || |||||||||||| |||| |||||||||||||||| | Sbjct: 954 ttgtagtcactgaatccagcctctaagaaaatcttcttccattcatgctcctctcgctcg 895 Query: 190 atcccgtcgatgtacatcatgaagacatcgaacaaaa 226 || || || | |||||||||||| ||||| ||||||| Sbjct: 894 atgccatcaacgtacatcatgaaaacatcaaacaaaa 858 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 289 attatcacctttcctccagcgtcccttaccgggatggctttcttgcactgacgcagtatc 348 |||||||||||||| ||||| |||||| || |||| || | |||||| | ||||| ||| Sbjct: 801 attatcacctttcccccagcatcccttgccaggattgcctctttgcaccgccgcagaatc 742 Query: 349 ttgatgcaatcttcgtctggccaatcatgcaaaat 383 |||| ||||| || ||| ||||| |||||||||| Sbjct: 741 ttgacacaatcatcatcttgccaagcatgcaaaat 707
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 125 taatcttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctc 184 ||||||||||||| |||||||||||||||| ||||| |||| ||||||| ||||| |||| Sbjct: 15021834 taatcttgtagtcactaaacccagcttcaaggaaaagcttcttccactcttgctcatctc 15021775 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 127 atcttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgc 186 ||||||||||| |||||||| ||||| | ||||| |||| ||||||| ||||| |||||| Sbjct: 15055696 atcttgtagtcactaaacccggcttcgacgaaaaccttcttccactcttgctcgtctcgc 15055637 Query: 187 t 187 | Sbjct: 15055636 t 15055636 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 463 ggagctccggcgacgacgcgagggaggtccagcacggtgca 503 ||||| |||||||||||| | |||||||||||||||||||| Sbjct: 15051238 ggagccccggcgacgacgtgggggaggtccagcacggtgca 15051198 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 271 ccgaccaccatatccatgattatcacctttcctccagcgtc 311 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 14795076 ccgaccactatatccatgattatcacctttccaccggcgtc 14795116 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 274 accaccatatccatgattatcacctttcctcc 305 ||||| ||||||||||||||||||||| |||| Sbjct: 15021691 accactatatccatgattatcaccttttctcc 15021660 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Plus Query: 273 gaccaccatatccatgattatcacctttcctccagc 308 |||||| | ||| ||||||||||||||||||||||| Sbjct: 14758639 gaccacaacatctatgattatcacctttcctccagc 14758674 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 406 gccggtgggatggactcgaacatgtcgccggggacg 441 |||||||||| | ||||||||||||||||| |||| Sbjct: 15051301 gccggtgggacgctctcgaacatgtcgccggcgacg 15051266 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 cagtatcttgatgcaatcttcgtc 365 ||||||||||||||| |||||||| Sbjct: 5374477 cagtatcttgatgcagtcttcgtc 5374454
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 125 taatcttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctc 184 ||||||||||||| |||||||||||||||| ||||| |||| ||||||| ||||| |||| Sbjct: 14976117 taatcttgtagtcactaaacccagcttcaaggaaaagcttcttccactcttgctcatctc 14976058 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 127 atcttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgc 186 ||||||||||| |||||||| ||||| | ||||| |||| ||||||| ||||| |||||| Sbjct: 15009979 atcttgtagtcactaaacccggcttcgacgaaaaccttcttccactcttgctcgtctcgc 15009920 Query: 187 t 187 | Sbjct: 15009919 t 15009919 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 463 ggagctccggcgacgacgcgagggaggtccagcacggtgca 503 ||||| |||||||||||| | |||||||||||||||||||| Sbjct: 15005521 ggagccccggcgacgacgtgggggaggtccagcacggtgca 15005481 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 271 ccgaccaccatatccatgattatcacctttcctccagcgtc 311 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 14749359 ccgaccactatatccatgattatcacctttccaccggcgtc 14749399 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 274 accaccatatccatgattatcacctttcctcc 305 ||||| ||||||||||||||||||||| |||| Sbjct: 14975974 accactatatccatgattatcaccttttctcc 14975943 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Plus Query: 273 gaccaccatatccatgattatcacctttcctccagc 308 |||||| | ||| ||||||||||||||||||||||| Sbjct: 14712922 gaccacaacatctatgattatcacctttcctccagc 14712957 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 406 gccggtgggatggactcgaacatgtcgccggggacg 441 |||||||||| | ||||||||||||||||| |||| Sbjct: 15005584 gccggtgggacgctctcgaacatgtcgccggcgacg 15005549 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 cagtatcttgatgcaatcttcgtc 365 ||||||||||||||| |||||||| Sbjct: 5374466 cagtatcttgatgcagtcttcgtc 5374443
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 174521 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 125 taatcttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctc 184 ||||||||||||| |||||||||||||||| ||||| |||| ||||||| ||||| |||| Sbjct: 60013 taatcttgtagtcactaaacccagcttcaaggaaaagcttcttccactcttgctcatctc 60072 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 463 ggagctccggcgacgacgcgagggaggtccagcacggtgca 503 ||||| |||||||||||| | |||||||||||||||||||| Sbjct: 30609 ggagccccggcgacgacgtgggggaggtccagcacggtgca 30649 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 127 atcttgtagtcgctaaacccagcttcaaagaaaatcttcctccactcatgctcctctcgc 186 ||||||||||| |||||||| ||||| | ||||| |||| ||||||| ||||| |||||| Sbjct: 26151 atcttgtagtcactaaacccggcttcgacgaaaaccttcttccactcttgctcgtctcgc 26210 Query: 187 t 187 | Sbjct: 26211 t 26211 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Plus Query: 274 accaccatatccatgattatcacctttcctcc 305 ||||| ||||||||||||||||||||| |||| Sbjct: 60156 accactatatccatgattatcaccttttctcc 60187 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 406 gccggtgggatggactcgaacatgtcgccggggacg 441 |||||||||| | ||||||||||||||||| |||| Sbjct: 30546 gccggtgggacgctctcgaacatgtcgccggcgacg 30581
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 478 acgcgagggaggtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct: 60612 acgcgaggaaggtccagcacagtgcacttgacgtgtgggaaggcct 60567 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| ||||||||||| || ||| | |||||||||||| Sbjct: 5346 aggtccagcacagtgcacttgacatgagggtaggccttggcgatg 5302 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 16568 gaggaaggtccagcacggtgcacttga 16594
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 478 acgcgagggaggtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct: 11438925 acgcgaggaaggtccagcacagtgcacttgacgtgtgggaaggcct 11438970 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||||||||| |||||||||| ||| ||||||||| ||||||| Sbjct: 7138307 gggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 7138354 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 470 cggcgacgacgcgagggaggtccagcacggtgcacttga 508 ||||||||||| | |||||||||| |||||||||||||| Sbjct: 19030465 cggcgacgacgtgggggaggtccatcacggtgcacttga 19030503 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| ||||||||||| || ||| | |||||||||||| Sbjct: 11494191 aggtccagcacagtgcacttgacatgagggtaggccttggcgatg 11494235 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Plus Query: 388 ttgagtaaaacggtgtccgccggtgggatggactcgaacatgtcgccggggacga 442 ||||||| ||| | |||||| ||||| ||||| | |||||||||||||| ||||| Sbjct: 19030377 ttgagtagaacagcgtccgctggtggaatggattggaacatgtcgccggcgacga 19030431 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 11482969 gaggaaggtccagcacggtgcacttga 11482943 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 ||||||||||||| |||||| ||||||||| |||| Sbjct: 11354614 gtccagcacggtgaacttgatgtgtgggaaggcct 11354648 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||||||||||||||| |||||||| |||| Sbjct: 11330975 gtccagcacggtgcacttgatatgtgggaacgcct 11331009 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| |||||||||| ||| ||| | |||||| ||||| Sbjct: 11549890 aggtccagcaccgtgcacttgatgtgcgggtacgccttgacgatg 11549934 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gggatggctttcttgcactg 338 |||||||||||||||||||| Sbjct: 7137757 gggatggctttcttgcactg 7137776
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 478 acgcgagggaggtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct: 11518114 acgcgaggaaggtccagcacagtgcacttgacgtgtgggaaggcct 11518159 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||||||||| |||||||||| ||| ||||||||| ||||||| Sbjct: 7204278 gggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 7204325 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 470 cggcgacgacgcgagggaggtccagcacggtgcacttga 508 ||||||||||| | |||||||||| |||||||||||||| Sbjct: 19189114 cggcgacgacgtgggggaggtccatcacggtgcacttga 19189152 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| ||||||||||| || ||| | |||||||||||| Sbjct: 11573380 aggtccagcacagtgcacttgacatgagggtaggccttggcgatg 11573424 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Plus Query: 388 ttgagtaaaacggtgtccgccggtgggatggactcgaacatgtcgccggggacga 442 ||||||| ||| | |||||| ||||| ||||| | |||||||||||||| ||||| Sbjct: 19189026 ttgagtagaacagcgtccgctggtggaatggattggaacatgtcgccggcgacga 19189080 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 11562158 gaggaaggtccagcacggtgcacttga 11562132 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 ||||||||||||| |||||| ||||||||| |||| Sbjct: 11433803 gtccagcacggtgaacttgatgtgtgggaaggcct 11433837 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||||||||||||||| |||||||| |||| Sbjct: 11410164 gtccagcacggtgcacttgatatgtgggaacgcct 11410198 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| |||||||||| ||| ||| | |||||| ||||| Sbjct: 11629079 aggtccagcaccgtgcacttgatgtgcgggtacgccttgacgatg 11629123 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gggatggctttcttgcactg 338 |||||||||||||||||||| Sbjct: 7203728 gggatggctttcttgcactg 7203747
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 271 ccgaccaccatatccatgattatcacctttcctcc 305 |||||||| |||||||||||||||||||||||||| Sbjct: 100093 ccgaccactatatccatgattatcacctttcctcc 100059
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10, complete sequence Length = 143073 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 271 ccgaccaccatatccatgattatcacctttcctcc 305 |||||||| |||||||||||||||||||||||||| Sbjct: 5850 ccgaccactatatccatgattatcacctttcctcc 5816
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 271 ccgaccaccatatccatgattatcacctttcctcc 305 |||||||| |||||||||||||||||||||||||| Sbjct: 25365489 ccgaccactatatccatgattatcacctttcctcc 25365455
>dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G03, full insert sequence Length = 1357 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 271 ccgaccaccatatccatgattatcacctttcctcc 305 |||||||| |||||||||||||||||||||||||| Sbjct: 934 ccgaccactatatccatgattatcacctttcctcc 900
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146519 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 271 ccgaccaccatatccatgattatcacctttcctccagcgtc 311 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 124810 ccgaccactatatccatgattatcacctttccaccggcgtc 124770
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133207 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 271 ccgaccaccatatccatgattatcacctttcctccagcgtc 311 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 23724 ccgaccactatatccatgattatcacctttccaccggcgtc 23684 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 273 gaccaccatatccatgattatcacctttcctccagc 308 |||||| | ||| ||||||||||||||||||||||| Sbjct: 60161 gaccacaacatctatgattatcacctttcctccagc 60126
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||||||||| |||||||||| ||| ||||||||| ||||||| Sbjct: 44248 gggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 44201 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gggatggctttcttgcactg 338 |||||||||||||||||||| Sbjct: 44798 gggatggctttcttgcactg 44779
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||||||||| |||||||||| ||| ||||||||| ||||||| Sbjct: 51527 gggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 51574 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gggatggctttcttgcactg 338 |||||||||||||||||||| Sbjct: 50977 gggatggctttcttgcactg 50996
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 470 cggcgacgacgcgagggaggtccagcacggtgcacttga 508 ||||||||||| | |||||||||| |||||||||||||| Sbjct: 133663 cggcgacgacgtgggggaggtccatcacggtgcacttga 133701 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Plus Query: 388 ttgagtaaaacggtgtccgccggtgggatggactcgaacatgtcgccggggacga 442 ||||||| ||| | |||||| ||||| ||||| | |||||||||||||| ||||| Sbjct: 133575 ttgagtagaacagcgtccgctggtggaatggattggaacatgtcgccggcgacga 133629
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 470 cggcgacgacgcgagggaggtccagcacggtgcacttga 508 ||||||||||| | |||||||||| |||||||||||||| Sbjct: 33283 cggcgacgacgtgggggaggtccatcacggtgcacttga 33321 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Plus Query: 388 ttgagtaaaacggtgtccgccggtgggatggactcgaacatgtcgccggggacga 442 ||||||| ||| | |||||| ||||| ||||| | |||||||||||||| ||||| Sbjct: 33195 ttgagtagaacagcgtccgctggtggaatggattggaacatgtcgccggcgacga 33249
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| ||||||||||| || ||| | |||||||||||| Sbjct: 119597 aggtccagcacagtgcacttgacatgagggtaggccttggcgatg 119553 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 130819 gaggaaggtccagcacggtgcacttga 130845 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| |||||||||| ||| ||| | |||||| ||||| Sbjct: 63898 aggtccagcaccgtgcacttgatgtgcgggtacgccttgacgatg 63854
>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence Length = 111620 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Plus Query: 121 ggagtaatcttgtagtcgctaaacccagc 149 ||||||||||||||||||||||| ||||| Sbjct: 26359 ggagtaatcttgtagtcgctaaaaccagc 26387 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 121 ggagtaatcttgtagtcgctaaacccagc 149 ||||||||||||||||| ||||| ||||| Sbjct: 45674 ggagtaatcttgtagtcactaaaaccagc 45702
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Plus Query: 276 caccatatccatgattatcacctttcctccagc 308 |||||||| ||||||||||||||||||||||| Sbjct: 9843193 caccatatttatgattatcacctttcctccagc 9843225 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Plus Query: 148 gcttcaaagaaaatcttcctccactcatgctcctctcgct 187 |||||||| |||||||| |||||||||||||||| |||| Sbjct: 7317190 gcttcaaaaaaaatctttttccactcatgctcctcacgct 7317229 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaa 518 ||||||||||||||| |||||||||| || ||||| Sbjct: 9844765 gggaggtccagcacgctgcacttgacatgggggaa 9844799 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 286 atgattatcacctttcctccagc 308 ||||||||||||||||||||||| Sbjct: 9833319 atgattatcacctttcctccagc 9833341 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 325 gctttcttgcactgacgcagtatcttgatgcaatc 359 |||||||||||||| | ||||||||||||||||| Sbjct: 7317364 gctttcttgcactgttgaagtatcttgatgcaatc 7317398
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Plus Query: 276 caccatatccatgattatcacctttcctccagc 308 |||||||| ||||||||||||||||||||||| Sbjct: 133435 caccatatttatgattatcacctttcctccagc 133467 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaa 518 ||||||||||||||| |||||||||| || ||||| Sbjct: 135007 gggaggtccagcacgctgcacttgacatgggggaa 135041 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 286 atgattatcacctttcctccagc 308 ||||||||||||||||||||||| Sbjct: 123561 atgattatcacctttcctccagc 123583
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Plus Query: 276 caccatatccatgattatcacctttcctccagc 308 |||||||| ||||||||||||||||||||||| Sbjct: 39828 caccatatttatgattatcacctttcctccagc 39860 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaa 518 ||||||||||||||| |||||||||| || ||||| Sbjct: 41400 gggaggtccagcacgctgcacttgacatgggggaa 41434 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 286 atgattatcacctttcctccagc 308 ||||||||||||||||||||||| Sbjct: 29954 atgattatcacctttcctccagc 29976
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| ||||||||||| || ||| | |||||||||||| Sbjct: 757 aggtccagcacagtgcacttgacatgagggtaggccttggcgatg 713
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 ||||||||||| ||||||||||| || ||| | |||||||||||| Sbjct: 762 aggtccagcacagtgcacttgacatgagggtaggccttggcgatg 718
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B11 Length = 166004 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Plus Query: 148 gcttcaaagaaaatcttcctccactcatgctcctctcgct 187 |||||||| |||||||| |||||||||||||||| |||| Sbjct: 23775 gcttcaaaaaaaatctttttccactcatgctcctcacgct 23814 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 325 gctttcttgcactgacgcagtatcttgatgcaatc 359 |||||||||||||| | ||||||||||||||||| Sbjct: 23949 gctttcttgcactgttgaagtatcttgatgcaatc 23983
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Plus Query: 148 gcttcaaagaaaatcttcctccactcatgctcctctcgct 187 |||||||| |||||||| |||||||||||||||| |||| Sbjct: 152194 gcttcaaaaaaaatctttttccactcatgctcctcacgct 152233 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 325 gctttcttgcactgacgcagtatcttgatgcaatc 359 |||||||||||||| | ||||||||||||||||| Sbjct: 152368 gctttcttgcactgttgaagtatcttgatgcaatc 152402
>ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 676 gaggaaggtccagcacggtgcacttga 650
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 ||||||||||||| |||||| ||||||||| |||| Sbjct: 140972 gtccagcacggtgaacttgatgtgtgggaaggcct 141006 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||||||||||||||| |||||||| |||| Sbjct: 117333 gtccagcacggtgcacttgatatgtgggaacgcct 117367
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 16264582 gaggaaggtccagcacggtgcacttga 16264608 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 16220135 gaggaaggtccagcacggtgcacttga 16220109
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 796 gaggaaggtccagcacggtgcacttga 770
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 85020 gaggaaggtccagcacggtgcacttga 85046 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 482 gagggaggtccagcacggtgcacttga 508 |||| |||||||||||||||||||||| Sbjct: 40573 gaggaaggtccagcacggtgcacttga 40547
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 489 gtccagcacggtgcacttgacgtgtgggaatgcct 523 |||||||||||||||||||| |||||||| |||| Sbjct: 772 gtccagcacggtgcacttgatatgtgggaacgcct 738
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Minus Query: 493 agcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||||||||||| || |||||| |||||| ||||| Sbjct: 733 agcacggtgcacttgatgtctgggaaggccttgacgatg 695
>gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA, complete cds Length = 1458 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 266 cagaaccgaccaccatatccatgattatcacctttcctccagc 308 ||||||| |||||||| | |||||||||||||| |||||||| Sbjct: 982 cagaaccaaccaccatgtttatgattatcaccttccctccagc 940
>gb|AC092906.11| Homo sapiens 3 BAC RP11-731M17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78457 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 151 tcaaagaaaatcttcctccact 172 |||||||||||||||||||||| Sbjct: 37619 tcaaagaaaatcttcctccact 37598
>gb|AY111551.1| Zea mays CL10273_1 mRNA sequence Length = 505 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Plus Query: 277 accatatccatgattatcacctttcctccagcgtccct 314 |||||||| | |||||||||||||||||| || ||||| Sbjct: 316 accatatcaacgattatcacctttcctcctgcatccct 353
>gb|AY110291.1| Zea mays CL2555_1 mRNA sequence Length = 1319 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgcctt 524 |||||||||||| | ||||||||||| ||||| ||||| Sbjct: 715 aggtccagcacgctacacttgacgtgcgggaacgcctt 678
>gb|L14063.1|MZEOMT Zea mays O-methyltransferase mRNA, complete cds Length = 1268 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 487 aggtccagcacggtgcacttgacgtgtgggaatgcctt 524 |||||||||||| | ||||||||||| ||||| ||||| Sbjct: 715 aggtccagcacgctacacttgacgtgcgggaacgcctt 678
>gb|AC102324.9| Mus musculus chromosome 1, clone RP24-476A18, complete sequence Length = 129634 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 caatcatgcaaaatgcacttg 390 ||||||||||||||||||||| Sbjct: 78372 caatcatgcaaaatgcacttg 78352
>ref|XM_640234.1| Dictyostelium discoideum hypothetical protein (DDB0216958), partial mRNA Length = 4941 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 accaccatatccatgattatc 294 ||||||||||||||||||||| Sbjct: 2079 accaccatatccatgattatc 2059
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 541 gcggtgccgtgggcgccaccc 561 ||||||||||||||||||||| Sbjct: 22677910 gcggtgccgtgggcgccaccc 22677930
>gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genomic sequence, complete sequence Length = 124170 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 541 gcggtgccgtgggcgccaccc 561 ||||||||||||||||||||| Sbjct: 15574 gcggtgccgtgggcgccaccc 15594
>gb|AC157542.11| Mus musculus chromosome 1, clone RP23-115I1, complete sequence Length = 211677 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 caatcatgcaaaatgcacttg 390 ||||||||||||||||||||| Sbjct: 130800 caatcatgcaaaatgcacttg 130780
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 gaatgccttggcgatgatcgc 536 ||||||||||||||||||||| Sbjct: 4235666 gaatgccttggcgatgatcgc 4235646
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 541 gcggtgccgtgggcgccaccc 561 ||||||||||||||||||||| Sbjct: 22670939 gcggtgccgtgggcgccaccc 22670959
>gb|AC115604.2| Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence Length = 60220 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 accaccatatccatgattatc 294 ||||||||||||||||||||| Sbjct: 9851 accaccatatccatgattatc 9831
>ref|XM_474786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 40.1 bits (20), Expect = 9.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||| |||||| ||||||||| || || || |||||||||||| Sbjct: 674 gggaggtcaagcacgctgcacttgatgtccggaaacgccttggcgatg 627
>gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0056A20, complete sequence Length = 151163 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 561 attatcacctttcctccagc 580
>gb|AC144801.2| Mus musculus BAC clone RP24-276M2 from chromosome 18, complete sequence Length = 174303 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gatttatatttaagggtaga 91 |||||||||||||||||||| Sbjct: 4309 gatttatatttaagggtaga 4290
>gb|AC131651.3| Mus musculus BAC clone RP24-98G17 from chromosome 18, complete sequence Length = 162740 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gatttatatttaagggtaga 91 |||||||||||||||||||| Sbjct: 133822 gatttatatttaagggtaga 133803
>ref|XM_781023.1| PREDICTED: Strongylocentrotus purpuratus similar to carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (LOC580997), mRNA Length = 4356 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 catgaagacatcgaacaaaacctc 230 ||||||||||||||||| |||||| Sbjct: 1005 catgaagacatcgaacagaacctc 982
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence Length = 137874 Score = 40.1 bits (20), Expect = 9.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||| |||||| ||||||||| || || || |||||||||||| Sbjct: 84455 gggaggtcaagcacgctgcacttgatgtccggaaacgccttggcgatg 84408
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 94742 attatcacctttcctccagc 94761
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 145048 attatcacctttcctccagc 145029
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 484 gggaggtccagcacggtgcacttgacgtgtgggaatgccttggcgatg 531 |||||||| |||||| ||||||||| || || || |||||||||||| Sbjct: 6530207 gggaggtcaagcacgctgcacttgatgtccggaaacgccttggcgatg 6530160
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 25774678 attatcacctttcctccagc 25774697
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 cagtatcttgatgcaatcttcgtc 365 ||||||||||||||| |||||||| Sbjct: 46544 cagtatcttgatgcagtcttcgtc 46521
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attatcacctttcctccagc 308 |||||||||||||||||||| Sbjct: 46889 attatcacctttcctccagc 46908
>emb|BX537113.8| Zebrafish DNA sequence from clone CH211-207G17 in linkage group 16, complete sequence Length = 218597 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aagatttatatttaagggta 89 |||||||||||||||||||| Sbjct: 3681 aagatttatatttaagggta 3662
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 cagtatcttgatgcaatcttcgtc 365 ||||||||||||||| |||||||| Sbjct: 91331 cagtatcttgatgcagtcttcgtc 91354
>gb|CP000206.1| Drosophila melanogaster genomic scaffold 211000022280664 Length = 169021 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ccagcttcaaagaaaatctt 164 |||||||||||||||||||| Sbjct: 87246 ccagcttcaaagaaaatctt 87227
>emb|AL683857.8| Mouse DNA sequence from clone RP23-46O18 on chromosome X, complete sequence Length = 238677 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 accatatccatgattatcac 296 |||||||||||||||||||| Sbjct: 11490 accatatccatgattatcac 11471 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,073,722 Number of Sequences: 3902068 Number of extensions: 5073722 Number of successful extensions: 141859 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140850 Number of HSP's gapped (non-prelim): 1009 length of query: 696 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 673 effective length of database: 17,143,297,704 effective search space: 11537439354792 effective search space used: 11537439354792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
