ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2n21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472545.1| Oryza sativa (japonica cultivar-group), predic... 339 8e-90
2dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 8e-90
3emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 252 1e-63
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
5gb|AY110636.1| Zea mays CL4177_1 mRNA sequence 250 5e-63
6dbj|AK105181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
7ref|XM_466685.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-04
8gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 46 0.16
9dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 46 0.16
10dbj|BS000191.1| Pan troglodytes chromosome 22 clone:PTB-015O01, ... 46 0.16
11dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 46 0.16
12dbj|AP000329.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 46 0.16
13dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 46 0.16
14gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, compl... 44 0.62
15gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, comp... 44 0.62
16gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, comple... 44 0.62
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.62
18dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.62
19gb|AY105803.1| Zea mays PCO143734 mRNA sequence 44 0.62
20gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
21gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, com... 42 2.5
22gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
23gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, com... 42 2.5
24gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence 42 2.5
25gb|AC023934.6| Homo sapiens chromosome 17, clone RP11-618P13, co... 42 2.5
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
27gb|AC109296.16| Mus musculus chromosome 1, clone RP24-240J15, co... 40 9.7
28gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, co... 40 9.7
29ref|NM_103325.1| Arabidopsis thaliana adenyl-nucleotide exchange... 40 9.7
30ref|NM_179420.1| Arabidopsis thaliana adenyl-nucleotide exchange... 40 9.7
31gb|AC163295.2| Mus musculus BAC clone RP23-132K20 from chromosom... 40 9.7
32ref|XM_591485.2| PREDICTED: Bos taurus similar to dishevelled-as... 40 9.7
33gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 40 9.7
34gb|AC122802.2| Mus musculus BAC clone RP24-136N24 from 6, comple... 40 9.7
35emb|BX957326.8| Zebrafish DNA sequence from clone DKEY-31B16 in ... 40 9.7
36emb|Z93928.1|HS127B14 Human DNA sequence from clone RP1-127B14 o... 40 9.7
37emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 o... 40 9.7
38emb|AL645565.3| Human DNA sequence from clone RP11-397M22 on chr... 40 9.7
39gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3... 40 9.7
40emb|AL133341.12| Human DNA sequence from clone RP3-342O24 on chr... 40 9.7
41gb|AY270320.1| Homo sapiens clone SKT02-D7 putative promoter seq... 40 9.7
42gb|AY117176.1| Arabidopsis thaliana putative heat shock protein ... 40 9.7
43gb|AY065397.1| Arabidopsis thaliana putative heat shock protein ... 40 9.7
44gb|AC005013.3| Homo sapiens BAC clone GS1-165L15 from 7, complet... 40 9.7
45gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Ca... 40 9.7
46emb|BX571977.7| Zebrafish DNA sequence from clone DKEY-9E15, com... 40 9.7
47gb|AC109463.2| Homo sapiens chromosome 5 clone RP11-273E10, comp... 40 9.7
48gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cance... 40 9.7
49gb|AC114309.2| Homo sapiens chromosome 5 clone RP11-261F10, comp... 40 9.7
50gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, com... 40 9.7
51emb|BX814493.1|CNS0AAR9 Arabidopsis thaliana Full-length cDNA Co... 40 9.7
52gb|AC097455.3| Homo sapiens BAC clone RP11-2J13 from 4, complete... 40 9.7
53gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complet... 40 9.7
54gb|AC021199.7|AC021199 Arabidopsis thaliana chromosome 1 BAC F7F... 40 9.7
55gb|AY088050.1| Arabidopsis thaliana clone 40701 mRNA, complete s... 40 9.7
56emb|AL513502.3|HS123J20 Homo sapiens chromosome 9 BAC RP11-123j2... 40 9.7
57emb|AL953894.5| Zebrafish DNA sequence from clone CH211-212B13 i... 40 9.7
58emb|AL450004.4|HS520K3 Homo sapiens chromosome 9 BAC RP11-520K3,... 40 9.7
59emb|AL845477.8| Mouse DNA sequence from clone RP23-206J10 on chr... 40 9.7 
>ref|XM_472545.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score =  339 bits (171), Expect = 8e-90
 Identities = 393/467 (84%)
 Strand = Plus / Minus

                                                                       
Query: 147 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 206
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 873 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 814

                                                                       
Query: 207 gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 266
            |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 813 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 754

                                                                       
Query: 267 cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaattctgtggattc 326
            ||||||||||| || | |||||| || ||||| ||||| |||||||| |     |||||
Sbjct: 753 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaactgatgagattc 694

                                                                       
Query: 327 ttcacgcgcgatagcctcatgaaccactggatcaaatggcttgccaacagtttccacaac 386
            || || |||||||||||||||| |   |||||||||||||||||||| |||||||||||
Sbjct: 693 ctcgcgtgcgatagcctcatgaatcgaaggatcaaatggcttgccaactgtttccacaac 634

                                                                       
Query: 387 ccctacacctaagcttttcagtgtttctactaattgcttgtatatgccttgatagcttgt 446
            ||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct: 633 tcctacacctaagcttctcaatgtctctactaactgcttgtatatgccttgatagcttgt 574

                                                                       
Query: 447 gctaatcttctgctctttctcagtctctagtgtgacctctacatttgttttctcgaagct 506
           ||||||| |||||||||| ||||||||  | |||| ||||  |||    ||||| || ||
Sbjct: 573 gctaatcgtctgctctttatcagtctccggggtgatctcttgattcaccttctcaaaact 514

                                                                       
Query: 507 atcaaccagaggtaacagactctgtacaagttccacttgtatattcgatgtaaactttgc 566
           |||||||||||  || |||||||| ||||  ||||| |||||||| || |||||| | ||
Sbjct: 513 atcaaccagagtcaatagactctgaacaacatccacctgtatatttgaggtaaacctagc 454

                                                          
Query: 567 acggtccttttcagtctgcttccggaaattctctagatcagcattta 613
           ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 453 acgctccttttcagtctgcttccggaaattctccagatcagcattta 407
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>dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N12, full
           insert sequence
          Length = 1180

 Score =  339 bits (171), Expect = 8e-90
 Identities = 393/467 (84%)
 Strand = Plus / Minus

                                                                       
Query: 147 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 206
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 971 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 912

                                                                       
Query: 207 gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 266
            |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 911 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 852

                                                                       
Query: 267 cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaattctgtggattc 326
            ||||||||||| || | |||||| || ||||| ||||| |||||||| |     |||||
Sbjct: 851 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaactgatgagattc 792

                                                                       
Query: 327 ttcacgcgcgatagcctcatgaaccactggatcaaatggcttgccaacagtttccacaac 386
            || || |||||||||||||||| |   |||||||||||||||||||| |||||||||||
Sbjct: 791 ctcgcgtgcgatagcctcatgaatcgaaggatcaaatggcttgccaactgtttccacaac 732

                                                                       
Query: 387 ccctacacctaagcttttcagtgtttctactaattgcttgtatatgccttgatagcttgt 446
            ||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct: 731 tcctacacctaagcttctcaatgtctctactaactgcttgtatatgccttgatagcttgt 672

                                                                       
Query: 447 gctaatcttctgctctttctcagtctctagtgtgacctctacatttgttttctcgaagct 506
           ||||||| |||||||||| ||||||||  | |||| ||||  |||    ||||| || ||
Sbjct: 671 gctaatcgtctgctctttatcagtctccggggtgatctcttgattcaccttctcaaaact 612

                                                                       
Query: 507 atcaaccagaggtaacagactctgtacaagttccacttgtatattcgatgtaaactttgc 566
           |||||||||||  || |||||||| ||||  ||||| |||||||| || |||||| | ||
Sbjct: 611 atcaaccagagtcaatagactctgaacaacatccacctgtatatttgaggtaaacctagc 552

                                                          
Query: 567 acggtccttttcagtctgcttccggaaattctctagatcagcattta 613
           ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 551 acgctccttttcagtctgcttccggaaattctccagatcagcattta 505



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 95   gagctcccaaacaatggtgctctagcta 122
            ||||||||||| ||||||||||||||||
Sbjct: 1062 gagctcccaaagaatggtgctctagcta 1035
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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
             complete sequence
          Length = 144811

 Score =  252 bits (127), Expect = 1e-63
 Identities = 226/259 (87%)
 Strand = Plus / Plus

                                                                         
Query: 355   ggatcaaatggcttgccaacagtttccacaacccctacacctaagcttttcagtgtttct 414
             |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||
Sbjct: 36084 ggatcaaatggcttgccaactgtttccacaactcctacacctaagcttctcaatgtctct 36143

                                                                         
Query: 415   actaattgcttgtatatgccttgatagcttgtgctaatcttctgctctttctcagtctct 474
             ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct: 36144 actaactgcttgtatatgccttgatagcttgtgctaatcgtctgctctttatcagtctcc 36203

                                                                         
Query: 475   agtgtgacctctacatttgttttctcgaagctatcaaccagaggtaacagactctgtaca 534
              | |||| ||||  |||    ||||| || |||||||||||||  || |||||||| |||
Sbjct: 36204 ggggtgatctcttgattcaccttctcaaaactatcaaccagagtcaatagactctgaaca 36263

                                                                         
Query: 535   agttccacttgtatattcgatgtaaactttgcacggtccttttcagtctgcttccggaaa 594
             |  ||||| |||||||| || |||||| | ||||| ||||||||||||||||||||||||
Sbjct: 36264 acatccacctgtatatttgaggtaaacctagcacgctccttttcagtctgcttccggaaa 36323

                                
Query: 595   ttctctagatcagcattta 613
             ||||| |||||||||||||
Sbjct: 36324 ttctccagatcagcattta 36342



 Score =  111 bits (56), Expect = 3e-21
 Identities = 140/168 (83%)
 Strand = Plus / Plus

                                                                         
Query: 147   tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 206
             ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 35644 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 35703

                                                                         
Query: 207   gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 266
              |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 35704 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 35763

                                                             
Query: 267   cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaa 314
              ||||||||||| || | |||||| || ||||| ||||| ||||||||
Sbjct: 35764 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaa 35811



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 95    gagctcccaaacaatggtgctctagcta 122
             ||||||||||| ||||||||||||||||
Sbjct: 35553 gagctcccaaagaatggtgctctagcta 35580
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  252 bits (127), Expect = 1e-63
 Identities = 226/259 (87%)
 Strand = Plus / Plus

                                                                            
Query: 355      ggatcaaatggcttgccaacagtttccacaacccctacacctaagcttttcagtgtttct 414
                |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||
Sbjct: 21386334 ggatcaaatggcttgccaactgtttccacaactcctacacctaagcttctcaatgtctct 21386393

                                                                            
Query: 415      actaattgcttgtatatgccttgatagcttgtgctaatcttctgctctttctcagtctct 474
                ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct: 21386394 actaactgcttgtatatgccttgatagcttgtgctaatcgtctgctctttatcagtctcc 21386453

                                                                            
Query: 475      agtgtgacctctacatttgttttctcgaagctatcaaccagaggtaacagactctgtaca 534
                 | |||| ||||  |||    ||||| || |||||||||||||  || |||||||| |||
Sbjct: 21386454 ggggtgatctcttgattcaccttctcaaaactatcaaccagagtcaatagactctgaaca 21386513

                                                                            
Query: 535      agttccacttgtatattcgatgtaaactttgcacggtccttttcagtctgcttccggaaa 594
                |  ||||| |||||||| || |||||| | ||||| ||||||||||||||||||||||||
Sbjct: 21386514 acatccacctgtatatttgaggtaaacctagcacgctccttttcagtctgcttccggaaa 21386573

                                   
Query: 595      ttctctagatcagcattta 613
                ||||| |||||||||||||
Sbjct: 21386574 ttctccagatcagcattta 21386592



 Score =  111 bits (56), Expect = 3e-21
 Identities = 140/168 (83%)
 Strand = Plus / Plus

                                                                            
Query: 147      tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 206
                ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 21385894 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 21385953

                                                                            
Query: 207      gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 266
                 |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 21385954 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 21386013

                                                                
Query: 267      cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaa 314
                 ||||||||||| || | |||||| || ||||| ||||| ||||||||
Sbjct: 21386014 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaa 21386061



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 95       gagctcccaaacaatggtgctctagcta 122
                ||||||||||| ||||||||||||||||
Sbjct: 21385803 gagctcccaaagaatggtgctctagcta 21385830
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>gb|AY110636.1| Zea mays CL4177_1 mRNA sequence
          Length = 1088

 Score =  250 bits (126), Expect = 5e-63
 Identities = 253/294 (86%), Gaps = 1/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 355 ggatcaaatggcttgccaacagtttccacaacccctacacctaagcttttcagtgtttct 414
           |||||||||||||||||||| ||||||||| |  | ||||| ||   | | |||||||| 
Sbjct: 683 ggatcaaatggcttgccaactgtttccacagcttccacacccaaatatcttagtgtttca 624

                                                                       
Query: 415 actaattgcttgtatatgccttgatagcttgtgctaatcttctgctctttctcagtctct 474
           ||||| ||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||
Sbjct: 623 actaactgcttgtatatgccttgatagcttgcgctgatcttttgctccttctcagtctct 564

                                                                       
Query: 475 agtgtgacctctacatttgttttctcgaagctatcaaccagaggtaacagactctgtaca 534
            | |||  ||||| |||| ||||||| || |||||||| ||||||||||||||||| |||
Sbjct: 563 ggggtgttctctagatttattttctcaaaactatcaactagaggtaacagactctgaaca 504

                                                                       
Query: 535 agttccacttgtatattcgatgtaaactttgcacggtccttttcagtctgcttccggaaa 594
           | ||||||  ||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 503 acttccacccgtatatttgatgttaactttgcacggtccttttcagtctgtttccggaaa 444

                                                                 
Query: 595 ttctctagatcagcatttaagcgaagaaacttattcttcccttgaagttatttc 648
           ||||| || || ||||||||||||| |||||| | ||||||  |||||||||||
Sbjct: 443 ttctccaggtcggcatttaagcgaataaacttttccttccc-agaagttatttc 391



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 229 gagaccttcactgcggcaggccttagcaccctctccctcagaaggaaccctcggtggact 288
           ||||||||||| |  ||||||||||||| ||||||| ||| | ||||||||| | |||||
Sbjct: 809 gagaccttcacagtagcaggccttagcagcctctccttcaaatggaaccctctgcggact 750

            
Query: 289 t 289
           |
Sbjct: 749 t 749
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>dbj|AK105181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G08, full
           insert sequence
          Length = 375

 Score =  107 bits (54), Expect = 5e-20
 Identities = 138/166 (83%)
 Strand = Plus / Minus

                                                                       
Query: 147 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 206
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 166 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 107

                                                                       
Query: 207 gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 266
            |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 106 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 47

                                                         
Query: 267 cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttg 312
            ||||||||||| || | |||||| || ||||| ||||| ||||||
Sbjct: 46  tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttg 1



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 95  gagctcccaaacaatggtgctctagcta 122
           ||||||||||| ||||||||||||||||
Sbjct: 257 gagctcccaaagaatggtgctctagcta 230
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>ref|XM_466685.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 999

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 337 atagcctcatgaaccactggatcaaatggcttgccaacagtttccaca 384
           ||||||||||||| ||  ||||||||||| ||||||||||| ||||||
Sbjct: 770 atagcctcatgaagcataggatcaaatggtttgccaacagtctccaca 723
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>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 688   tctcttcctccttgctagtgatt 710
             |||||||||||||||||||||||
Sbjct: 42335 tctcttcctccttgctagtgatt 42357
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>dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 26/28, complete
             sequence
          Length = 100000

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 676   ctgctttacttctctcttcctccttgc 702
             |||| ||||||||||||||||||||||
Sbjct: 69146 ctgccttacttctctcttcctccttgc 69120
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>dbj|BS000191.1| Pan troglodytes chromosome 22 clone:PTB-015O01, map 22, complete
              sequences
          Length = 155412

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 676    ctgctttacttctctcttcctccttgc 702
              |||| ||||||||||||||||||||||
Sbjct: 117345 ctgccttacttctctcttcctccttgc 117319
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>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105
          Length = 340000

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 676    ctgctttacttctctcttcctccttgc 702
              |||| ||||||||||||||||||||||
Sbjct: 251355 ctgccttacttctctcttcctccttgc 251329
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>dbj|AP000329.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
            clone:Q92D1, complete sequence
          Length = 10909

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 676  ctgctttacttctctcttcctccttgc 702
            |||| ||||||||||||||||||||||
Sbjct: 7536 ctgccttacttctctcttcctccttgc 7510
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>dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 6/9, complete sequence
          Length = 100000

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 676   ctgctttacttctctcttcctccttgc 702
             |||| ||||||||||||||||||||||
Sbjct: 61114 ctgccttacttctctcttcctccttgc 61088
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>gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, complete sequence
          Length = 149408

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    aaacagagctcccaaacaatgg 111
             ||||||||||||||||||||||
Sbjct: 70767 aaacagagctcccaaacaatgg 70746
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>gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, complete sequence
          Length = 171165

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    aaacagagctcccaaacaatgg 111
             ||||||||||||||||||||||
Sbjct: 93183 aaacagagctcccaaacaatgg 93162
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>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence
          Length = 159620

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    aaacagagctcccaaacaatgg 111
             ||||||||||||||||||||||
Sbjct: 77391 aaacagagctcccaaacaatgg 77370
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 355      ggatcaaatggcttgccaacagtttccaca 384
                ||||||||||| ||||||||||| ||||||
Sbjct: 24112846 ggatcaaatggtttgccaacagtctccaca 24112817
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A05
          Length = 174290

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 355   ggatcaaatggcttgccaacagtttccaca 384
             ||||||||||| ||||||||||| ||||||
Sbjct: 71587 ggatcaaatggtttgccaacagtctccaca 71558
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>gb|AY105803.1| Zea mays PCO143734 mRNA sequence
          Length = 1421

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 355 ggatcaaatggcttgccaacagtttc 380
           ||||||||||| ||||||||||||||
Sbjct: 858 ggatcaaatggtttgccaacagtttc 833
to top
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
             complete sequence
          Length = 146712

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 630   cttcccttgaagttatttcaa 650
             |||||||||||||||||||||
Sbjct: 10307 cttcccttgaagttatttcaa 10287
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>gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, complete sequence
          Length = 210979

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 674   agctgctttacttctctcttc 694
             |||||||||||||||||||||
Sbjct: 83004 agctgctttacttctctcttc 83024
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>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11,
             complete sequence
          Length = 162772

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 630   cttcccttgaagttatttcaa 650
             |||||||||||||||||||||
Sbjct: 90121 cttcccttgaagttatttcaa 90101
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>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence
          Length = 130895

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 398    agcttttcagtgtttctacta 418
              |||||||||||||||||||||
Sbjct: 101661 agcttttcagtgtttctacta 101641
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>gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence
          Length = 187599

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 624   cttattcttcccttgaagttatttc 648
             ||||||||||| |||||||||||||
Sbjct: 14064 cttattcttccattgaagttatttc 14088
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>gb|AC023934.6| Homo sapiens chromosome 17, clone RP11-618P13, complete sequence
          Length = 157069

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 624   cttattcttcccttgaagttatttc 648
             ||||||||||| |||||||||||||
Sbjct: 60158 cttattcttccattgaagttatttc 60182
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 630      cttcccttgaagttatttcaa 650
                |||||||||||||||||||||
Sbjct: 25147466 cttcccttgaagttatttcaa 25147446
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>gb|AC109296.16| Mus musculus chromosome 1, clone RP24-240J15, complete sequence
          Length = 161257

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 367    ttgccaacagtttccacaacccct 390
              ||||||||||| ||||||||||||
Sbjct: 143021 ttgccaacagtctccacaacccct 142998
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>gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   ttgccaacagtttccacaacccct 390
             ||||||||||| ||||||||||||
Sbjct: 29381 ttgccaacagtctccacaacccct 29358
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>ref|NM_103325.1| Arabidopsis thaliana adenyl-nucleotide exchange factor/ chaperone
           binding / protein homodimerization AT1G36390 transcript
           variant AT1G36390.1 mRNA, complete cds
          Length = 1027

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 ggatcaaatggcttgccaacagtt 378
           |||||||| |||||||||||||||
Sbjct: 700 ggatcaaaaggcttgccaacagtt 677
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>ref|NM_179420.1| Arabidopsis thaliana adenyl-nucleotide exchange factor/ chaperone
           binding / protein homodimerization AT1G36390 transcript
           variant AT1G36390.2 mRNA, complete cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 ggatcaaatggcttgccaacagtt 378
           |||||||| |||||||||||||||
Sbjct: 699 ggatcaaaaggcttgccaacagtt 676
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>gb|AC163295.2| Mus musculus BAC clone RP23-132K20 from chromosome 14, complete
             sequence
          Length = 212576

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   cacaacccctacacctaagc 400
             ||||||||||||||||||||
Sbjct: 62559 cacaacccctacacctaagc 62578
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>ref|XM_591485.2| PREDICTED: Bos taurus similar to dishevelled-associated activator
           of morphogenesis 1 (LOC513742), partial mRNA
          Length = 2383

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 680 tttacttctctcttcctcct 699
           ||||||||||||||||||||
Sbjct: 213 tttacttctctcttcctcct 194
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aaagggacccatttaaaatc 61
              ||||||||||||||||||||
Sbjct: 116560 aaagggacccatttaaaatc 116541
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>gb|AC122802.2| Mus musculus BAC clone RP24-136N24 from 6, complete sequence
          Length = 185938

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   tgaaccactggatcaaatgg 365
             ||||||||||||||||||||
Sbjct: 91829 tgaaccactggatcaaatgg 91848
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>emb|BX957326.8| Zebrafish DNA sequence from clone DKEY-31B16 in linkage group 23,
              complete sequence
          Length = 259092

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     atattaacagtacaaacaga 96
              ||||||||||||||||||||
Sbjct: 159589 atattaacagtacaaacaga 159608
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>emb|Z93928.1|HS127B14 Human DNA sequence from clone RP1-127B14 on chromosome Xq22, complete
             sequence
          Length = 126263

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 253   agcaccctctccctcagaaggaac 276
             ||||||||||| ||||||||||||
Sbjct: 32436 agcaccctctctctcagaaggaac 32459
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>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete
             sequence
          Length = 176947

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   cctccacaggctcctccgaa 192
             ||||||||||||||||||||
Sbjct: 11528 cctccacaggctcctccgaa 11547
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>emb|AL645565.3| Human DNA sequence from clone RP11-397M22 on chromosome 9 Contains a CpG
              island, complete sequence
          Length = 146309

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 643    tatttcaagctgtgatactg 662
              ||||||||||||||||||||
Sbjct: 137700 tatttcaagctgtgatactg 137681
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>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete
              sequence
          Length = 252632

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    tactaattgcttgtatatgc 433
              ||||||||||||||||||||
Sbjct: 141316 tactaattgcttgtatatgc 141335
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>emb|AL133341.12| Human DNA sequence from clone RP3-342O24 on chromosome 20 Contains ESTs
             and GSSs, complete sequence
          Length = 35033

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    tgttgtttaaaagggacccattta 56
             |||||||||||||| |||||||||
Sbjct: 28927 tgttgtttaaaaggcacccattta 28904
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>gb|AY270320.1| Homo sapiens clone SKT02-D7 putative promoter sequence
          Length = 295

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 33 tgttgtttaaaagggacccattta 56
          |||||||||||||| |||||||||
Sbjct: 65 tgttgtttaaaaggcacccattta 88
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>gb|AY117176.1| Arabidopsis thaliana putative heat shock protein (At1g36390) mRNA,
           complete cds
          Length = 871

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 ggatcaaatggcttgccaacagtt 378
           |||||||| |||||||||||||||
Sbjct: 653 ggatcaaaaggcttgccaacagtt 630
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>gb|AY065397.1| Arabidopsis thaliana putative heat shock protein (At1g36390) mRNA,
           complete cds
          Length = 1024

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 ggatcaaatggcttgccaacagtt 378
           |||||||| |||||||||||||||
Sbjct: 702 ggatcaaaaggcttgccaacagtt 679
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>gb|AC005013.3| Homo sapiens BAC clone GS1-165L15 from 7, complete sequence
          Length = 195917

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   agcaccctctccctcagaag 272
             ||||||||||||||||||||
Sbjct: 85400 agcaccctctccctcagaag 85381
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>gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 115294

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 673   aagctgctttacttctctct 692
             ||||||||||||||||||||
Sbjct: 42177 aagctgctttacttctctct 42158
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>emb|BX571977.7| Zebrafish DNA sequence from clone DKEY-9E15, complete sequence
          Length = 82992

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    atattaacagtacaaacaga 96
             ||||||||||||||||||||
Sbjct: 77652 atattaacagtacaaacaga 77671
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>gb|AC109463.2| Homo sapiens chromosome 5 clone RP11-273E10, complete sequence
          Length = 23936

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 633   cccttgaagttatttcaagc 652
             ||||||||||||||||||||
Sbjct: 20711 cccttgaagttatttcaagc 20692
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>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181191

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     tgtgttgtttaaaagggacc 50
              ||||||||||||||||||||
Sbjct: 142525 tgtgttgtttaaaagggacc 142506
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>gb|AC114309.2| Homo sapiens chromosome 5 clone RP11-261F10, complete sequence
          Length = 41260

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 633   cccttgaagttatttcaagc 652
             ||||||||||||||||||||
Sbjct: 33437 cccttgaagttatttcaagc 33456
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>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 443    ttgtgctaatcttctgctctttctcagtctct 474
              |||| |||||||||||||| |||||| |||||
Sbjct: 189293 ttgttctaatcttctgctccttctcattctct 189324
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>emb|BX814493.1|CNS0AAR9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZA09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 988

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 ggatcaaatggcttgccaacagtt 378
           |||||||| |||||||||||||||
Sbjct: 685 ggatcaaaaggcttgccaacagtt 662
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>gb|AC097455.3| Homo sapiens BAC clone RP11-2J13 from 4, complete sequence
          Length = 147327

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 466   tcagtctctagtgtgacctctacatttgtttt 497
             |||||||||| ||  |||||||||||||||||
Sbjct: 73739 tcagtctctaatgaaacctctacatttgtttt 73708
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>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence
          Length = 175644

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 685   ttctctcttcctccttgcta 704
             ||||||||||||||||||||
Sbjct: 50428 ttctctcttcctccttgcta 50447
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>gb|AC021199.7|AC021199 Arabidopsis thaliana chromosome 1 BAC F7F23 genomic sequence, complete
             sequence
          Length = 73252

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 355   ggatcaaatggcttgccaacagtt 378
             |||||||| |||||||||||||||
Sbjct: 53874 ggatcaaaaggcttgccaacagtt 53897
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>gb|AY088050.1| Arabidopsis thaliana clone 40701 mRNA, complete sequence
          Length = 1027

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 ggatcaaatggcttgccaacagtt 378
           |||||||| |||||||||||||||
Sbjct: 700 ggatcaaaaggcttgccaacagtt 677
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>emb|AL513502.3|HS123J20 Homo sapiens chromosome 9 BAC RP11-123j20, complete sequence
          Length = 174636

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 643   tatttcaagctgtgatactg 662
             ||||||||||||||||||||
Sbjct: 88464 tatttcaagctgtgatactg 88483
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>emb|AL953894.5| Zebrafish DNA sequence from clone CH211-212B13 in linkage group 18,
              complete sequence
          Length = 222376

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 433    ccttgatagcttgtgctaatcttc 456
              |||||| |||||||||||||||||
Sbjct: 157635 ccttgaaagcttgtgctaatcttc 157658
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>emb|AL450004.4|HS520K3 Homo sapiens chromosome 9 BAC RP11-520K3, complete sequence
          Length = 174662

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 643    tatttcaagctgtgatactg 662
              ||||||||||||||||||||
Sbjct: 170630 tatttcaagctgtgatactg 170649
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>emb|AL845477.8| Mouse DNA sequence from clone RP23-206J10 on chromosome 2, complete
             sequence
          Length = 103901

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 522   cagactctgtacaagttccacttg 545
             |||||||| |||||||||||||||
Sbjct: 48983 cagactctttacaagttccacttg 49006


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,310,732
Number of Sequences: 3902068
Number of extensions: 6310732
Number of successful extensions: 126767
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126546
Number of HSP's gapped (non-prelim): 216
length of query: 710
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 687
effective length of database: 17,143,297,704
effective search space: 11777445522648
effective search space used: 11777445522648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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