ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3c20 |
|---|---|
| Clone Library Name | barley_pub |
>PAPS2_HUMAN (O95340) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 2 (PAPS synthetase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK2) (SK 2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 614 Score = 72.0 bits (175), Expect = 7e-13 Identities = 31/53 (58%), Positives = 38/53 (71%) Frame = -1 Query: 461 KKMAXFEPSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSLQ 303 K M ++P+R +F FISGT+MR A+ G NPPDGFM P WKVL DYY SL+ Sbjct: 560 KAMDFYDPARHNEFDFISGTRMRKLAREGENPPDGFMAPKAWKVLTDYYRSLE 612
>PAPS2_MOUSE (O88428) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 2 (PAPS synthetase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK2) (SK 2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 621 Score = 70.9 bits (172), Expect = 2e-12 Identities = 30/53 (56%), Positives = 39/53 (73%) Frame = -1 Query: 461 KKMAXFEPSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSLQ 303 K M ++P+R ++F FISGT+MR A+ G +PPDGFM P WKVL DYY SL+ Sbjct: 566 KAMDFYDPARHEEFDFISGTRMRKLAREGEDPPDGFMAPKAWKVLTDYYRSLE 618
>PAPSS_URECA (Q27128) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase (PAPS synthetase) (PAPSS) (Sulfurylase kinase) (SK) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase); Adenylyl-s Length = 610 Score = 65.5 bits (158), Expect = 7e-11 Identities = 25/49 (51%), Positives = 35/49 (71%) Frame = -1 Query: 455 MAXFEPSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNS 309 M ++P R +F+FISGTKMR A+ G PP+GFM P WK++V+YY + Sbjct: 557 MDFYDPERHDEFMFISGTKMRGMARAGETPPNGFMAPSAWKIMVEYYKT 605
>PAPS1_MOUSE (Q60967) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 624 Score = 64.3 bits (155), Expect = 1e-10 Identities = 27/53 (50%), Positives = 36/53 (67%) Frame = -1 Query: 461 KKMAXFEPSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSLQ 303 K+M ++ +DF FISGT+MR A+ G PP+GFM P W VLV+YY SL+ Sbjct: 570 KRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLVEYYKSLE 622
>PAPS1_HUMAN (O43252) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 624 Score = 62.8 bits (151), Expect = 4e-10 Identities = 26/53 (49%), Positives = 35/53 (66%) Frame = -1 Query: 461 KKMAXFEPSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSLQ 303 K+M ++ +DF FISGT+MR A+ G PP+GFM P W VL +YY SL+ Sbjct: 570 KRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLE 622
>PAPS1_CAVPO (O54820) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 624 Score = 61.6 bits (148), Expect = 1e-09 Identities = 25/53 (47%), Positives = 35/53 (66%) Frame = -1 Query: 461 KKMAXFEPSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSLQ 303 K+M ++ +DF FISGT+MR A+ G PP+GFM P W VL +YY +L+ Sbjct: 570 KRMDYYDAEHHEDFEFISGTRMRRLAREGQKPPEGFMAPTAWAVLAEYYKALE 622
>SAT_CHRVI (O66036) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 397 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = -1 Query: 425 DFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSL 306 DF+ +SGT++R G PP F P ++L+DYY SL Sbjct: 355 DFIQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSL 394
>SAT_PORYE (Q60FC6) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 419 Score = 32.7 bits (73), Expect = 0.47 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = -1 Query: 413 ISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSLQTEGATA 285 ISG+KMR +G P M P +VL+DYY + + + ATA Sbjct: 378 ISGSKMREMLNSGSMPDSRVMRPATAQVLMDYY-AAKNKSATA 419
>SAT_ENTHI (O76156) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 423 Score = 32.7 bits (73), Expect = 0.47 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -1 Query: 440 PSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYNSL 306 P +D + +SGT +R G PD F K+L DYY L Sbjct: 359 PHTKKDRVIVSGTMVRKMLSEGKTLPDHFGRAESLKILADYYQHL 403
>SAT2_BACSU (O06736) Probable sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 389 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 440 PSRSQDFLFISGTKMRTFAKTGXNPPDGFMCPGGWKVLV 324 P +D + +SGTK+R + G PP F P VL+ Sbjct: 333 PHSPRDHIHLSGTKVRELLRQGKKPPKEFSRPEVAAVLI 371
>AICDA_MOUSE (Q9WVE0) Activation-induced cytidine deaminase (EC 3.5.4.5)| (Cytidine aminohydrolase) Length = 198 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Frame = -2 Query: 112 CSNFFFQNRKRDFEAW---HRNSKLLT 41 C N F +NR+R F+AW H NS LT Sbjct: 147 CWNTFVENRERTFKAWEGLHENSVRLT 173
>SAT_SYNY3 (P74241) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 390 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 440 PSRSQDFLFISGTKMRTFAKTGXNPPDGFMCP 345 PS +D + +SGTK+R + G PP F P Sbjct: 345 PSGPEDRIHLSGTKVRALLRDGQLPPPEFSRP 376
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -2 Query: 439 LHAVKIFCSSQEPRCALSPKLXRTLLMVSCALVG 338 LH V I C+ PRCA++ +L LL L G Sbjct: 1228 LHRVVITCTEDLPRCAIASRLGLPLLSPEFLLTG 1261
>PHNC_ECO57 (Q8XDV7) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 262 Score = 28.5 bits (62), Expect = 8.9 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +2 Query: 368 GSXQFWRKCASWFLR 412 GS FWR C SWF R Sbjct: 113 GSTPFWRTCFSWFTR 127
>SAT_PYRAB (P56863) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 379 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -1 Query: 413 ISGTKMRTFAKTGXNPPDGFMCPGGWKVLVDYYN 312 ISGTK+R G PP+ M P ++V+ + N Sbjct: 342 ISGTKLRNMIMRGEKPPEYMMRPEVYEVIRSFDN 375 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,009,200 Number of Sequences: 219361 Number of extensions: 894325 Number of successful extensions: 1735 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1735 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
