ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3c19 |
|---|---|
| Clone Library Name | barley_pub |
>TS101_RAT (Q6IRE4) Tumor susceptibility gene 101 protein| Length = 391 Score = 46.2 bits (108), Expect = 5e-05 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -2 Query: 417 IQPADVLSRQMLECTATDLALEDTIYALDKAVQEGSVPFDGYLRSVRALAREQFFQRVLC 238 I P L +Q+L A + A+EDTI+ L +A++ G + D +L+ VR L+R+QF R L Sbjct: 319 IIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALM 378 Query: 237 TK 232 K Sbjct: 379 QK 380
>TS101_MOUSE (Q61187) Tumor susceptibility gene 101 protein| Length = 391 Score = 46.2 bits (108), Expect = 5e-05 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -2 Query: 417 IQPADVLSRQMLECTATDLALEDTIYALDKAVQEGSVPFDGYLRSVRALAREQFFQRVLC 238 I P L +Q+L A + A+EDTI+ L +A++ G + D +L+ VR L+R+QF R L Sbjct: 319 IIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALM 378 Query: 237 TK 232 K Sbjct: 379 QK 380
>TS101_HUMAN (Q99816) Tumor susceptibility gene 101 protein| Length = 390 Score = 46.2 bits (108), Expect = 5e-05 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -2 Query: 417 IQPADVLSRQMLECTATDLALEDTIYALDKAVQEGSVPFDGYLRSVRALAREQFFQRVLC 238 I P L +Q+L A + A+EDTI+ L +A++ G + D +L+ VR L+R+QF R L Sbjct: 318 IIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALM 377 Query: 237 TK 232 K Sbjct: 378 QK 379
>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive| alpha-factor receptor and arginine permease (Vacuolar protein sorting-associated protein VPS23) Length = 385 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = -2 Query: 390 QMLECTATDLALEDTIYALDKAVQEGSVPFDGYLRSVRALAREQFFQR 247 Q+ A D AL DTI L + + G++P D +++ R LAR+QF R Sbjct: 327 QLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 374
>MA1C1_HUMAN (Q9NR34) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IC) (Alpha-1,2-mannosidase IC) (Mannosidase alpha class 1C member 1) (HMIC) Length = 630 Score = 31.2 bits (69), Expect = 1.7 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Frame = +1 Query: 31 LIEFLLVSAHIDDNGNQLYTEPLFLTMDESIGHKACILTYPSSWLGGVLWCP*GHPSNLR 210 LI+ L+S D +Y E L + LTY + W GG+L GH Sbjct: 396 LIKSWLMSGKTDMEAKNMYYEALEAIETYLLNVSPGGLTYIAEWRGGILDHKMGH----- 450 Query: 211 LLLC----IVDLGAEDTLEELLPCECTHAPEVAVEGHRSFLDS 327 L C ++ LGAED EE A ++ H S+ S Sbjct: 451 -LACFSGGMIALGAEDAKEEKRAHYRELAAQITKTCHESYARS 492
>AMY_STRLI (Q05884) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 919 Score = 30.0 bits (66), Expect = 3.7 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +3 Query: 249 AGRTAPVRVH----ARS*GSRRRAPILPGQPCRARRWCPQAPNQ*LCTQASAWTARRLAG 416 AGRTA R+H AR G+ RR P G+P +ARR + + A LA Sbjct: 700 AGRTASGRLHHRHPARRGGAHRRLPGPRGRPLQARRRELRRLGPVRLGRPRRREAHHLAR 759 Query: 417 WPPLPRQCR 443 PPL R R Sbjct: 760 HPPLHRPGR 768
>RNZ_GLOVI (Q7NDW3) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 317 Score = 29.6 bits (65), Expect = 4.8 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +1 Query: 361 QISSCALKHLPGQHVGWLDGPLC---LGSVVTSPLTVLGDPGLND 486 Q+ HL G H+ L G L LGS T+P+ + G PGL + Sbjct: 54 QLEKVFFTHLHGDHLFGLVGLLASRALGSAGTTPVKLYGPPGLQE 98
>ASB5_RABIT (Q862Z2) Ankyrin repeat and SOCS box protein 5 (ASB-5)| Length = 329 Score = 28.9 bits (63), Expect = 8.2 Identities = 22/51 (43%), Positives = 26/51 (50%) Frame = +1 Query: 181 CP*GHPSNLRLLLCIVDLGAEDTLEELLPCECTHAPEVAVEGHRSFLDSLV 333 C G S LLL + GA+ LE LP TH E A +GH FLD L+ Sbjct: 144 CSQGSTSCTELLL---EYGAKAQLESCLPSP-TH--EAASKGHHEFLDLLI 188
>RNZ_SHIFL (P0A8V1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 379 LKHLPGQHVGWLDGPLCLGSV--VTSPLTVLGDPGLND 486 + HL G H+ L G LC S+ + PLT+ G G+ + Sbjct: 62 ISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIRE 99
>RNZ_ECOLI (P0A8V0) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 379 LKHLPGQHVGWLDGPLCLGSV--VTSPLTVLGDPGLND 486 + HL G H+ L G LC S+ + PLT+ G G+ + Sbjct: 62 ISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIRE 99
>RNZ_ECO57 (Q8XCZ0) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 379 LKHLPGQHVGWLDGPLCLGSV--VTSPLTVLGDPGLND 486 + HL G H+ L G LC S+ + PLT+ G G+ + Sbjct: 62 ISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIRE 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,318,080 Number of Sequences: 219361 Number of extensions: 1335726 Number of successful extensions: 3791 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3678 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3789 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
