ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3c19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
2dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
3dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
4dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
5emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259... 42 1.7
6gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-38... 42 1.7
7ref|XM_454508.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E12419g ... 40 6.8
8ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 6.8
9emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.8
10gb|CP000183.1| Drosophila melanogaster genomic scaffold 21100002... 40 6.8
11dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 4e-35
 Identities = 184/219 (84%)
 Strand = Plus / Plus

                                                                            
Query: 173      tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 232
                |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 35855553 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 35855612

                                                                            
Query: 233      ttggtgcagaggacacgctggaagaactgctcccgtgcgagtgcacgcacgctcctgagg 292
                |||||  | ||||| || ||||| |||||||||||||| || || |||||||||||||||
Sbjct: 35855613 ttggttgacaggacgcgttggaaaaactgctcccgtgcaagcgctcgcacgctcctgagg 35855672

                                                                            
Query: 293      tagccgtcgaagggcaccgatccttcctggacagccttgtcgagcgcgtagatggtgtcc 352
                ||||| || || ||||| || || ||||| |  |||||||| ||||| || |||||||||
Sbjct: 35855673 tagccatcaaatggcacagaaccctcctgaatggccttgtcaagcgcataaatggtgtcc 35855732

                                                       
Query: 353      tcaagcgccaaatcagtagctgtgcactcaagcatctgc 391
                || || |||||||| | ||| ||||||||||||||||||
Sbjct: 35855733 tcgagtgccaaatccgcagcagtgcactcaagcatctgc 35855771
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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score =  157 bits (79), Expect = 4e-35
 Identities = 184/219 (84%)
 Strand = Plus / Plus

                                                                         
Query: 173   tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 232
             |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 46099 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 46158

                                                                         
Query: 233   ttggtgcagaggacacgctggaagaactgctcccgtgcgagtgcacgcacgctcctgagg 292
             |||||  | ||||| || ||||| |||||||||||||| || || |||||||||||||||
Sbjct: 46159 ttggttgacaggacgcgttggaaaaactgctcccgtgcaagcgctcgcacgctcctgagg 46218

                                                                         
Query: 293   tagccgtcgaagggcaccgatccttcctggacagccttgtcgagcgcgtagatggtgtcc 352
             ||||| || || ||||| || || ||||| |  |||||||| ||||| || |||||||||
Sbjct: 46219 tagccatcaaatggcacagaaccctcctgaatggccttgtcaagcgcataaatggtgtcc 46278

                                                    
Query: 353   tcaagcgccaaatcagtagctgtgcactcaagcatctgc 391
             || || |||||||| | ||| ||||||||||||||||||
Sbjct: 46279 tcgagtgccaaatccgcagcagtgcactcaagcatctgc 46317
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>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
            insert sequence
          Length = 1547

 Score =  157 bits (79), Expect = 4e-35
 Identities = 184/219 (84%)
 Strand = Plus / Minus

                                                                        
Query: 173  tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 232
            |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 1292 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 1233

                                                                        
Query: 233  ttggtgcagaggacacgctggaagaactgctcccgtgcgagtgcacgcacgctcctgagg 292
            |||||  | ||||| || ||||| |||||||||||||| || || |||||||||||||||
Sbjct: 1232 ttggttgacaggacgcgttggaaaaactgctcccgtgcaagcgctcgcacgctcctgagg 1173

                                                                        
Query: 293  tagccgtcgaagggcaccgatccttcctggacagccttgtcgagcgcgtagatggtgtcc 352
            ||||| || || ||||| || || ||||| |  |||||||| ||||| || |||||||||
Sbjct: 1172 tagccatcaaatggcacagaaccctcctgaatggccttgtcaagcgcataaatggtgtcc 1113

                                                   
Query: 353  tcaagcgccaaatcagtagctgtgcactcaagcatctgc 391
            || || |||||||| | ||| ||||||||||||||||||
Sbjct: 1112 tcgagtgccaaatccgcagcagtgcactcaagcatctgc 1074
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>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
            insert sequence
          Length = 1562

 Score =  157 bits (79), Expect = 4e-35
 Identities = 184/219 (84%)
 Strand = Plus / Minus

                                                                        
Query: 173  tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 232
            |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 1307 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 1248

                                                                        
Query: 233  ttggtgcagaggacacgctggaagaactgctcccgtgcgagtgcacgcacgctcctgagg 292
            |||||  | ||||| || ||||| |||||||||||||| || || |||||||||||||||
Sbjct: 1247 ttggttgacaggacgcgttggaaaaactgctcccgtgcaagcgctcgcacgctcctgagg 1188

                                                                        
Query: 293  tagccgtcgaagggcaccgatccttcctggacagccttgtcgagcgcgtagatggtgtcc 352
            ||||| || || ||||| || || ||||| |  |||||||| ||||| || |||||||||
Sbjct: 1187 tagccatcaaatggcacagaaccctcctgaatggccttgtcaagcgcataaatggtgtcc 1128

                                                   
Query: 353  tcaagcgccaaatcagtagctgtgcactcaagcatctgc 391
            || || |||||||| | ||| ||||||||||||||||||
Sbjct: 1127 tcgagtgccaaatccgcagcagtgcactcaagcatctgc 1089
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>emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259P1 on chromosome 22 Contains
             STSs, GSSs, genomic markers D22S1154, D22S310 and D22S690
             and a gt repeat polymorphism, complete sequence
          Length = 48084

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   tgcgcctgctgctgtgcattg 226
             |||||||||||||||||||||
Sbjct: 15106 tgcgcctgctgctgtgcattg 15086
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>gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-383D22, complete sequence
          Length = 211466

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aatgggaaccaactttacact 90
             |||||||||||||||||||||
Sbjct: 62329 aatgggaaccaactttacact 62309
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>ref|XM_454508.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E12419g predicted mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ctcggcagtgtcgtcaccag 449
           ||||||||||||||||||||
Sbjct: 282 ctcggcagtgtcgtcaccag 263
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>ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1)
            partial mRNA
          Length = 3987

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   ccccagctaatagagttctt 44
            ||||||||||||||||||||
Sbjct: 1370 ccccagctaatagagttctt 1351
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     ctcggcagtgtcgtcaccag 449
               ||||||||||||||||||||
Sbjct: 1096109 ctcggcagtgtcgtcaccag 1096090
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>gb|CP000183.1| Drosophila melanogaster genomic scaffold 211000022280458
          Length = 100390

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   aacctgcgcctgctgctgtg 221
             ||||||||||||||||||||
Sbjct: 52682 aacctgcgcctgctgctgtg 52663



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   aacctgcgcctgctgctgtg 221
             ||||||||||||||||||||
Sbjct: 50686 aacctgcgcctgctgctgtg 50667
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>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
              sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     caatgggaaccaactttaca 88
              ||||||||||||||||||||
Sbjct: 148214 caatgggaaccaactttaca 148233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,290,246
Number of Sequences: 3902068
Number of extensions: 3290246
Number of successful extensions: 60884
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60867
Number of HSP's gapped (non-prelim): 17
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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