ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2n17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X94296.1|HVRL24E H.vulgare mRNA for L24 ribosomal protein Length = 708 Score = 967 bits (488), Expect = 0.0 Identities = 495/496 (99%), Gaps = 1/496 (0%) Strand = Plus / Minus Query: 13 ctcatcgagacaatccaaaacgttaagaccattcagcctcacagaaaaggtgcaaattca 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 ctcatcgagacaatccaaaacgttaagaccattcagcctcacagaaaaggtgcaaattca 649 Query: 73 agagggcaaggtaacttgagaaaggtctatgatagtaggataggataagaaacaaggcta 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 agagggcaaggtaacttgagaaaggtctatgatagtaggataggataagaaacaaggcta 589 Query: 133 ggcagcacaactctatgtctatgatgtaatcgactttcaacgcttgccgccgccaccgcc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 ggcagcacaactctatgtctatgatgtaatcgactttcaacgcttgccgccgccaccgcc 529 Query: 193 aagctttgggcccttggaacccttctgcacggcacccttgcccccctgtgacttctggga 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 528 aagctttgggcccttggaacccttctgcacggcacccttgcccccctgtgacttctggga 469 Query: 253 cttggtcacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctcctt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 468 cttggtcacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctcctt 409 Query: 313 gatctcacgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctctt 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 408 gatctcacgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctctt 349 Query: 373 cttctggataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggt 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 cttctggataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggt 289 Query: 433 gcggcgcctcttcttggcagcctcagcatggatgtcctttcttgtgctgcttcctgtaca 492 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 288 gcggcgcctcttcttggcagcctcagcatggatgtcc-ttcttgtgctgcttcctgtaca 230 Query: 493 ttgctgtccagcaaag 508 |||||||||||||||| Sbjct: 229 ttgctgtccagcaaag 214
>gb|BT016791.1| Zea mays clone Contig624 mRNA sequence Length = 772 Score = 347 bits (175), Expect = 2e-92 Identities = 298/337 (88%), Gaps = 4/337 (1%) Strand = Plus / Minus Query: 167 tttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggca 226 ||||| || ||||| ||||| ||||| | ||| |||||||||||||| ||||| || || Sbjct: 593 tttcagcgtttgccaccgccgccgcccaacttggggcccttggaacctttctggacagcg 534 Query: 227 cccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctca 286 ||||| | ||| | |||||||||||||| |||||| |||||||| ||||||||||| Sbjct: 533 ccctt---cgtctgcgccttctgggacttggacacctcagccttcttcgccttcttctcg 477 Query: 287 tccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatca 346 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 476 tccttggtcttcttgatgcgctccttgatctcacgaagagcagcttctctagcagcatca 417 Query: 347 cggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaatc 406 ||||| |||||||||||||| |||||||||||||| ||||||| | ||||| ||||| Sbjct: 416 cggacctcaggcttctcagctctcttcttctggatcacttccaaggaagcacccacaatg 357 Query: 407 gaccgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggatg 466 |||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||| Sbjct: 356 gacctcgagtacggcttcttggtggcgcggcgcctcttcttgacagcttcagcatggatg 297 Query: 467 tcctttcttgtgctgcttcctgtacattgctgtccag 503 ||| ||||||||||||||||||||||||||||||||| Sbjct: 296 tcc-ttcttgtgctgcttcctgtacattgctgtccag 261
>gb|BT018224.1| Zea mays clone EL01N0561E06.c mRNA sequence Length = 767 Score = 333 bits (168), Expect = 3e-88 Identities = 297/338 (87%), Gaps = 4/338 (1%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggc 225 |||||| |||||||| |||||||| || | ||| |||||||||||||||||||| || || Sbjct: 589 ctttcagcgcttgccaccgccaccacccaacttggggcccttggaacccttctggaccgc 530 Query: 226 acccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctc 285 ||||| | ||||| ||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 529 tccctt---cgtctgtgccttctgggacttggtcacctcagcctttttcgccttcttctc 473 Query: 286 atccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatc 345 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 472 atccttggtcttcttgatgcgctccttgatctcgcgaagagcagcttctctagcagcatc 413 Query: 346 acggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaat 405 ||||| || ||||||||||||||||| |||||||| || || || | ||||| ||||| Sbjct: 412 gcggacctcgggcttctcagccctctttttctggatcacctctagggaagcacccacaat 353 Query: 406 cgaccgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggat 465 |||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 352 ggacctcgagtatggcttcttggtggcgcggcgcctcttcttgacagcctcagcatggat 293 Query: 466 gtcctttcttgtgctgcttcctgtacattgctgtccag 503 ||| |||||| |||||||||||||||||||||||||| Sbjct: 292 atcc-ttcttgggctgcttcctgtacattgctgtccag 256
>dbj|AK101927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071P12, full insert sequence Length = 843 Score = 329 bits (166), Expect = 5e-87 Identities = 242/266 (90%), Gaps = 1/266 (0%) Strand = Plus / Minus Query: 238 ctgtgacttctgggacttggtcacctctgccttcttggccttcttctcatccttggtctt 297 ||||| |||||| || || | ||||||||||||||| ||||| |||||||||||||| || Sbjct: 506 ctgtgtcttctgagattttgccacctctgccttctttgcctttttctcatccttggtttt 447 Query: 298 cttgatgcgctccttgatctcacgaagagcggcttctctggcagcatcacggacttcagg 357 |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 446 cttgatgcgctccttgatctcacggagagccgcttctctggctgcatcacggacttcagg 387 Query: 358 cttctcagccctcttcttctggataacttccagtgtggcaccaacaatcgaccgtgagta 417 |||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 386 tttctcactcctcttcttttggataacttccagtgtagcaccaacaattgaccgtgagta 327 Query: 418 cggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggatgtcctttcttgt 477 ||||||||||||||||| |||||||||||| |||| |||||||| |||||| ||||||| Sbjct: 326 tggcttcttggtggtgcgacgcctcttcttgacagcttcagcatgaatgtcc-ttcttgt 268 Query: 478 gctgcttcctgtacattgctgtccag 503 |||||||||||||||| ||||||||| Sbjct: 267 gctgcttcctgtacatagctgtccag 242
>dbj|AK058612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A11, full insert sequence Length = 781 Score = 329 bits (166), Expect = 5e-87 Identities = 242/266 (90%), Gaps = 1/266 (0%) Strand = Plus / Minus Query: 238 ctgtgacttctgggacttggtcacctctgccttcttggccttcttctcatccttggtctt 297 ||||| |||||| || || | ||||||||||||||| ||||| |||||||||||||| || Sbjct: 505 ctgtgtcttctgagattttgccacctctgccttctttgcctttttctcatccttggtttt 446 Query: 298 cttgatgcgctccttgatctcacgaagagcggcttctctggcagcatcacggacttcagg 357 |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 445 cttgatgcgctccttgatctcacggagagccgcttctctggctgcatcacggacttcagg 386 Query: 358 cttctcagccctcttcttctggataacttccagtgtggcaccaacaatcgaccgtgagta 417 |||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 385 tttctcactcctcttcttttggataacttccagtgtagcaccaacaattgaccgtgagta 326 Query: 418 cggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggatgtcctttcttgt 477 ||||||||||||||||| |||||||||||| |||| |||||||| |||||| ||||||| Sbjct: 325 tggcttcttggtggtgcgacgcctcttcttgacagcttcagcatgaatgtcc-ttcttgt 267 Query: 478 gctgcttcctgtacattgctgtccag 503 |||||||||||||||| ||||||||| Sbjct: 266 gctgcttcctgtacatagctgtccag 241
>dbj|AK059430.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F02, full insert sequence Length = 779 Score = 321 bits (162), Expect = 1e-84 Identities = 294/336 (87%), Gaps = 4/336 (1%) Strand = Plus / Minus Query: 168 ttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggcac 227 |||| ||||| || || ||||| |||| ||| ||||||||||||||| || | |||||| Sbjct: 584 ttcagcgctttccaccaccaccaccaatcttcgggcccttggaacccctcggggcggcac 525 Query: 228 ccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctcat 287 |||| | ||| ||||||||||||||||| ||||| |||||||| |||||||| |||| Sbjct: 524 cctt---cgactgcgacttctgggacttggttacctcagccttcttcgccttcttttcat 468 Query: 288 ccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatcac 347 ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct: 467 ccttggtcttcttgatgcgttccttgatctcacgaagagcagcttctctagcagcatcac 408 Query: 348 ggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaatcg 407 | ||||||||||| ||||| |||||||| ||||| ||||||| | ||||||||||| | Sbjct: 407 gaacttcaggcttttcagctctcttcttttggatgacttccaacgaagcaccaacaattg 348 Query: 408 accgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggatgt 467 ||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||| | Sbjct: 347 acctagagtatggcttcttggtggtgcggcgcctcttcttgacagcttcagcatggatat 288 Query: 468 cctttcttgtgctgcttcctgtacattgctgtccag 503 || ||||||||||||||||||||||| ||||||||| Sbjct: 287 cc-ttcttgtgctgcttcctgtacatggctgtccag 253
>ref|XM_475453.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 486 Score = 319 bits (161), Expect = 5e-84 Identities = 281/319 (88%), Gaps = 4/319 (1%) Strand = Plus / Minus Query: 185 ccaccgccaagctttgggcccttggaacccttctgcacggcacccttgcccccctgtgac 244 ||||| |||| ||| ||||||||||||||| || | |||||||||| | ||| ||| Sbjct: 470 ccaccaccaatcttcgggcccttggaacccctcggggcggcaccctt---cgactgcgac 414 Query: 245 ttctgggacttggtcacctctgccttcttggccttcttctcatccttggtcttcttgatg 304 |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 413 ttctgggacttggttacctcagccttcttcgccttcttttcatccttggtcttcttgatg 354 Query: 305 cgctccttgatctcacgaagagcggcttctctggcagcatcacggacttcaggcttctca 364 || |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 353 cgttccttgatctcacgaagagcagcttctctagcagcatcacgaacttcaggcttttca 294 Query: 365 gccctcttcttctggataacttccagtgtggcaccaacaatcgaccgtgagtacggcttc 424 || |||||||| ||||| ||||||| | ||||||||||| |||| ||||| |||||| Sbjct: 293 gctctcttcttttggatgacttccaacgaagcaccaacaattgacctagagtatggcttc 234 Query: 425 ttggtggtgcggcgcctcttcttggcagcctcagcatggatgtcctttcttgtgctgctt 484 |||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| Sbjct: 233 ttggtggtgcggcgcctcttcttgacagcttcagcatggatatcc-ttcttgtgctgctt 175 Query: 485 cctgtacattgctgtccag 503 ||||||||| ||||||||| Sbjct: 174 cctgtacatggctgtccag 156
>gb|AY109363.1| Zea mays CL303_3 mRNA sequence Length = 1436 Score = 303 bits (153), Expect = 3e-79 Identities = 292/338 (86%), Gaps = 4/338 (1%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggc 225 |||||| |||||||| ||||| || || | ||| |||||||||||||||||||| || || Sbjct: 1303 ctttcagcgcttgccaccgccgccacccaacttggggcccttggaacccttctggaccgc 1244 Query: 226 acccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctc 285 ||||| | ||| | ||||||||||||||||||||| ||| ||||||||||| Sbjct: 1243 tccctt---cgtctgcgccttctgggacttggtcacctcagccnnnnncgccttcttctc 1187 Query: 286 atccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatc 345 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1186 atccttggtcttcttgatgcgctccttgatctcgcgaagagcagcttctctagcagcatc 1127 Query: 346 acggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaat 405 ||||| || |||||||||||||||||||||||||| || || || | ||||| ||||| Sbjct: 1126 gcggacctcgggcttctcagccctcttcttctggatcacctctagggaagcacccacaat 1067 Query: 406 cgaccgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggat 465 |||| ||||| ||||||||| ||| |||||||||||||||| |||||||||||||||| Sbjct: 1066 ggacctcgagtatggcttcttgttggcgcggcgcctcttcttgacagcctcagcatggat 1007 Query: 466 gtcctttcttgtgctgcttcctgtacattgctgtccag 503 ||| ||||||||||||||||||||||||||||||||| Sbjct: 1006 atcc-ttcttgtgctgcttcctgtacattgctgtccag 970
>gb|BT016435.1| Zea mays clone Contig268 mRNA sequence Length = 793 Score = 301 bits (152), Expect = 1e-78 Identities = 293/338 (86%), Gaps = 4/338 (1%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggc 225 |||||| ||||| || || || ||||| | ||| |||||||||||||||||||| || || Sbjct: 602 ctttcagcgcttcccaccaccgccgcccaacttggggcccttggaacccttctggaccgc 543 Query: 226 acccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctc 285 |||||| | || | ||||||||||||| ||||||| |||||||| || |||||||| Sbjct: 542 accctttgtc---tgcgtcttctgggacttgctcacctccgccttcttcgctttcttctc 486 Query: 286 atccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatc 345 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 485 atccttggtcttcttgatgcgctccttgatctcacgaagagcagcttctctagcagcatc 426 Query: 346 acggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaat 405 ||||| || ||||||||||| |||||||||||||| ||||||| | ||||| ||||| Sbjct: 425 gcggacctctggcttctcagctctcttcttctggattacttccaaggaagcacccacaat 366 Query: 406 cgaccgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggat 465 |||| ||||| ||||||||||||| ||||||||||||||| | || ||||||||||| Sbjct: 365 tgacctggagtatggcttcttggtggcgcggcgcctcttctttaccgcttcagcatggat 306 Query: 466 gtcctttcttgtgctgcttcctgtacattgctgtccag 503 ||| ||||||||||||||||||||||||||||||||| Sbjct: 305 atcc-ttcttgtgctgcttcctgtacattgctgtccag 269
>gb|BT017947.1| Zea mays clone EL01N0521F01.c mRNA sequence Length = 859 Score = 301 bits (152), Expect = 1e-78 Identities = 293/338 (86%), Gaps = 4/338 (1%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggc 225 |||||| ||||| || || || ||||| | ||| |||||||||||||||||||| || || Sbjct: 656 ctttcagcgcttcccaccaccgccgcccaacttggggcccttggaacccttctggaccgc 597 Query: 226 acccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctc 285 |||||| | || | ||||||||||||| ||||||| |||||||| || |||||||| Sbjct: 596 accctttgtc---tgcgtcttctgggacttgctcacctccgccttcttcgctttcttctc 540 Query: 286 atccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatc 345 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 539 atccttggtcttcttgatgcgctccttgatctcacgaagagcagcttctctagcagcatc 480 Query: 346 acggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaat 405 ||||| || ||||||||||| |||||||||||||| ||||||| | ||||| ||||| Sbjct: 479 gcggacctctggcttctcagctctcttcttctggattacttccaaggaagcacccacaat 420 Query: 406 cgaccgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggat 465 |||| ||||| ||||||||||||| ||||||||||||||| | || ||||||||||| Sbjct: 419 tgacctggagtatggcttcttggtggcgcggcgcctcttctttaccgcttcagcatggat 360 Query: 466 gtcctttcttgtgctgcttcctgtacattgctgtccag 503 ||| ||||||||||||||||||||||||||||||||| Sbjct: 359 atcc-ttcttgtgctgcttcctgtacattgctgtccag 323
>gb|BT018227.1| Zea mays clone EL01N0561F11.c mRNA sequence Length = 1335 Score = 299 bits (151), Expect = 5e-78 Identities = 267/305 (87%), Gaps = 3/305 (0%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggc 225 |||||| |||||||| |||||||| || | ||| |||||||||||||||||||| || || Sbjct: 1111 ctttcagcgcttgccaccgccaccacccaacttggggcccttggaacccttctggaccgc 1052 Query: 226 acccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctc 285 ||||| | ||||| ||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 1051 tccctt---cgtctgtgccttctgggacttggtcacctcagcctttttcgccttcttctc 995 Query: 286 atccttggtcttcttgatgcgctccttgatctcacgaagagcggcttctctggcagcatc 345 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 994 atccttggtcttcttgatgcgctccttgatctcgcgaagagcagcttctctagcagcatc 935 Query: 346 acggacttcaggcttctcagccctcttcttctggataacttccagtgtggcaccaacaat 405 ||||| || |||||||||||||||||||||||||| || || || | ||||| ||||| Sbjct: 934 gcggacctcgggcttctcagccctcttcttctggatcacctctagggaagcacccacaat 875 Query: 406 cgaccgtgagtacggcttcttggtggtgcggcgcctcttcttggcagcctcagcatggat 465 |||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 874 ggacctcgagtatggcttcttggtggcgcggcgcctcttcttgacagcctcagcatggat 815 Query: 466 gtcct 470 |||| Sbjct: 814 atcct 810 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccag 503 ||||||||||||||||||||||||||||||||| Sbjct: 242 ttcttgtgctgcttcctgtacattgctgtccag 210
>ref|NM_186639.1| Oryza sativa (japonica cultivar-group), mRNA Length = 483 Score = 246 bits (124), Expect = 6e-62 Identities = 215/244 (88%), Gaps = 1/244 (0%) Strand = Plus / Minus Query: 259 cacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctc 318 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 396 cacctctgccttcttcgctttcttctcgtcctttgtcttcttgatgcgctccttgatctc 337 Query: 319 acgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctg 378 ||||||||||| ||| || || |||||||| || || ||||||||||| ||||||||||| Sbjct: 336 acgaagagcggattcccttgctgcatcacgaacctctggcttctcagctctcttcttctg 277 Query: 379 gataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcg 438 ||| ||||| || || |||||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 276 gatgacttcaagggtagcaccaactatagaccgggagtacggtttcttggtggtgcggcg 217 Query: 439 cctcttcttggcagcctcagcatggatgtcctttcttgtgctgcttcctgtacattgctg 498 |||||||||| | ||||| || || || ||| |||||||||||||| |||||||| |||| Sbjct: 216 cctcttcttgactgcctcggcgtgaatatcc-ttcttgtgctgctttctgtacatggctg 158 Query: 499 tcca 502 |||| Sbjct: 157 tcca 154
>dbj|AB118010.1| Oryza sativa (japonica cultivar-group) bip123 mRNA for BRI1-KD interacting protein 123, partial cds Length = 461 Score = 196 bits (99), Expect = 5e-47 Identities = 147/163 (90%) Strand = Plus / Minus Query: 238 ctgtgacttctgggacttggtcacctctgccttcttggccttcttctcatccttggtctt 297 ||||| |||||| || || | ||||||||||||||| ||||| |||||||||||||| || Sbjct: 163 ctgtgtcttctgagattttgccacctctgccttctttgcctttttctcatccttggtttt 104 Query: 298 cttgatgcgctccttgatctcacgaagagcggcttctctggcagcatcacggacttcagg 357 |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 103 cttgatgcgctccttgatctcacggagagccgcttctctggctgcatcacggacttcagg 44 Query: 358 cttctcagccctcttcttctggataacttccagtgtggcacca 400 |||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 43 tttctcactcctcttcttttggataacttccagtgtagcacca 1
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 190 bits (96), Expect = 3e-45 Identities = 135/148 (91%) Strand = Plus / Minus Query: 323 agagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggata 382 ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| |||||| Sbjct: 34677852 agagccgcttctctggctgcatcacggacttcaggtttctcactcctcttcttttggata 34677793 Query: 383 acttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgcctc 442 ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 34677792 acttccagtgtagcaccaacaattgaccgtgagtatggcttcttggtggtgcgacgcctc 34677733 Query: 443 ttcttggcagcctcagcatggatgtcct 470 |||||| |||| |||||||| ||||||| Sbjct: 34677732 ttcttgacagcttcagcatgaatgtcct 34677705 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 238 ctgtgacttctgggacttggtcacctctgccttcttggccttcttctcatccttggtctt 297 ||||| |||||| || || | ||||||||||||||| ||||| |||||||||||||| || Sbjct: 34678295 ctgtgtcttctgagattttgccacctctgccttctttgcctttttctcatccttggtttt 34678236 Query: 298 cttgatgcgctccttgatctcac 320 ||||||||||||||||||||||| Sbjct: 34678235 cttgatgcgctccttgatctcac 34678213 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccag 503 ||||||||||||||||||||||| ||||||||| Sbjct: 34677231 ttcttgtgctgcttcctgtacatagctgtccag 34677199
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 190 bits (96), Expect = 3e-45 Identities = 135/148 (91%) Strand = Plus / Minus Query: 323 agagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggata 382 ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| |||||| Sbjct: 129869 agagccgcttctctggctgcatcacggacttcaggtttctcactcctcttcttttggata 129810 Query: 383 acttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgcctc 442 ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 129809 acttccagtgtagcaccaacaattgaccgtgagtatggcttcttggtggtgcgacgcctc 129750 Query: 443 ttcttggcagcctcagcatggatgtcct 470 |||||| |||| |||||||| ||||||| Sbjct: 129749 ttcttgacagcttcagcatgaatgtcct 129722 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 238 ctgtgacttctgggacttggtcacctctgccttcttggccttcttctcatccttggtctt 297 ||||| |||||| || || | ||||||||||||||| ||||| |||||||||||||| || Sbjct: 130312 ctgtgtcttctgagattttgccacctctgccttctttgcctttttctcatccttggtttt 130253 Query: 298 cttgatgcgctccttgatctcac 320 ||||||||||||||||||||||| Sbjct: 130252 cttgatgcgctccttgatctcac 130230 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccag 503 ||||||||||||||||||||||| ||||||||| Sbjct: 129248 ttcttgtgctgcttcctgtacatagctgtccag 129216
>gb|AF298827.1|AF298827 Prunus avium 60S ribosomal protein L24 (RL24) mRNA, complete cds Length = 690 Score = 184 bits (93), Expect = 2e-43 Identities = 205/241 (85%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 263 tctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacga 322 |||||||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||| Sbjct: 443 tctgccttcttggccttcttttcatccttggttttcttgatcctctccttgatttcacgg 384 Query: 323 agagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggata 382 ||||| ||||| || ||||||||||| || || |||||||||| ||| ||||||||||| Sbjct: 383 agagcagcttcccttgcagcatcacgaacctcgggcttctcagttctcctcttctggata 324 Query: 383 acttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgcctc 442 || || ||||||||||| ||||| |||| |||||| |||||||||||||| || | |||| Sbjct: 323 acctcgagtgtggcacccacaatagaccttgagtaaggcttcttggtggtacgtctcctc 264 Query: 443 ttcttggcagcctcagcatggatgtcctttcttgtgctgcttcctgtacattgctgtcca 502 ||||| |||| || | || |||||| |||||||||||||||||||| |||||||| Sbjct: 263 ttcttcacagcttcttgagcaatatccttt-ttgtgctgcttcctgtacatggctgtcca 205 Query: 503 g 503 | Sbjct: 204 g 204
>ref|NM_115162.2| Arabidopsis thaliana structural constituent of ribosome AT3G53020 mRNA, complete cds Length = 787 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 504 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 445 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 444 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 385 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 384 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 340
>gb|AY093180.1| Arabidopsis thaliana 60S ribosomal protein-like (At3g53020) mRNA, complete cds Length = 728 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 458 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 399 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 398 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 339 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 338 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 294
>dbj|AB199790.1| Arabidopsis thaliana STV1 mRNA for ribosomal protein L24, complete cds Length = 684 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 439 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 380 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 379 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 320 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 319 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 275
>gb|AY058129.1| Arabidopsis thaliana AT3g53020/F8J2_190 mRNA, complete cds Length = 787 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 504 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 445 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 444 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 385 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 384 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 340
>gb|BT006545.1| Arabidopsis thaliana At3g53020 gene, complete cds Length = 492 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 391 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 332 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 331 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 272 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 271 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 227
>emb|BX822812.1|CNS0A77L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZF02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 708 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 425 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 366 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 365 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 306 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 305 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 261
>emb|BX826253.1|CNS0A6AJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL94ZD11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 765 Score = 161 bits (81), Expect = 3e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 482 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 423 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 422 cagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaattactt 363 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 362 ccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 318
>emb|BX821500.1|CNS0A99G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL45ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 658 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 418 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 359 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| |||| ||||||||| ||||| | Sbjct: 358 cagcttctctagcggcatcacgaacttcaggcttctctgcccgcttcttctgaataacct 299 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 298 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 259
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02, complete sequence Length = 127642 Score = 157 bits (79), Expect = 4e-35 Identities = 133/151 (88%) Strand = Plus / Plus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 |||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| ||| Sbjct: 76307 cgaagagcagcttctctagcagcatcacgaacttcaggcttttcagctctcttcttttgg 76366 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 || ||||||| | ||||||||||| |||| ||||| ||||||||||||||||||||| Sbjct: 76367 atgacttccaacgaagcaccaacaattgacctagagtatggcttcttggtggtgcggcgc 76426 Query: 440 ctcttcttggcagcctcagcatggatgtcct 470 ||||||||| |||| ||||||||||| |||| Sbjct: 76427 ctcttcttgacagcttcagcatggatatcct 76457 Score = 125 bits (63), Expect = 2e-25 Identities = 131/153 (85%), Gaps = 3/153 (1%) Strand = Plus / Plus Query: 168 ttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggcac 227 |||| ||||| || || ||||| |||| ||| ||||||||||||||| || | |||||| Sbjct: 75784 ttcagcgctttccaccaccaccaccaatcttcgggcccttggaacccctcggggcggcac 75843 Query: 228 ccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctcat 287 |||| | ||| ||||||||||||||||| ||||| |||||||| |||||||| |||| Sbjct: 75844 cctt---cgactgcgacttctgggacttggttacctcagccttcttcgccttcttttcat 75900 Query: 288 ccttggtcttcttgatgcgctccttgatctcac 320 ||||||||||||||||||| ||||||||||||| Sbjct: 75901 ccttggtcttcttgatgcgttccttgatctcac 75933 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 471 ttcttgtgctgcttcctgtacattgctgtccag 503 ||||||||||||||||||||||| ||||||||| Sbjct: 76942 ttcttgtgctgcttcctgtacatggctgtccag 76974
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 157 bits (79), Expect = 4e-35 Identities = 133/151 (88%) Strand = Plus / Plus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 |||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| ||| Sbjct: 23795486 cgaagagcagcttctctagcagcatcacgaacttcaggcttttcagctctcttcttttgg 23795545 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 || ||||||| | ||||||||||| |||| ||||| ||||||||||||||||||||| Sbjct: 23795546 atgacttccaacgaagcaccaacaattgacctagagtatggcttcttggtggtgcggcgc 23795605 Query: 440 ctcttcttggcagcctcagcatggatgtcct 470 ||||||||| |||| ||||||||||| |||| Sbjct: 23795606 ctcttcttgacagcttcagcatggatatcct 23795636 Score = 125 bits (63), Expect = 2e-25 Identities = 131/153 (85%), Gaps = 3/153 (1%) Strand = Plus / Plus Query: 168 ttcaacgcttgccgccgccaccgccaagctttgggcccttggaacccttctgcacggcac 227 |||| ||||| || || ||||| |||| ||| ||||||||||||||| || | |||||| Sbjct: 23794963 ttcagcgctttccaccaccaccaccaatcttcgggcccttggaacccctcggggcggcac 23795022 Query: 228 ccttgcccccctgtgacttctgggacttggtcacctctgccttcttggccttcttctcat 287 |||| | ||| ||||||||||||||||| ||||| |||||||| |||||||| |||| Sbjct: 23795023 cctt---cgactgcgacttctgggacttggttacctcagccttcttcgccttcttttcat 23795079 Query: 288 ccttggtcttcttgatgcgctccttgatctcac 320 ||||||||||||||||||| ||||||||||||| Sbjct: 23795080 ccttggtcttcttgatgcgttccttgatctcac 23795112 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 471 ttcttgtgctgcttcctgtacattgctgtccag 503 ||||||||||||||||||||||| ||||||||| Sbjct: 23796121 ttcttgtgctgcttcctgtacatggctgtccag 23796153
>ref|NM_129217.2| Arabidopsis thaliana structural constituent of ribosome AT2G36620 mRNA, complete cds Length = 682 Score = 151 bits (76), Expect = 3e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 437 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 378 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| | Sbjct: 377 cagcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacct 318 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 317 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 278 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 234 ttcttgtgctgctttcggtacatagcagtccagcaaag 197
>gb|AY114728.1| Arabidopsis thaliana 60S ribosomal protein L24 (At2g36620) mRNA, complete cds Length = 529 Score = 151 bits (76), Expect = 3e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 391 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 332 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| | Sbjct: 331 cagcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacct 272 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 271 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 232 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 188 ttcttgtgctgctttcggtacatagcagtccagcaaag 151
>gb|AY072350.1| Arabidopsis thaliana 60S ribosomal protein L24 (At2g36620) mRNA, complete cds Length = 674 Score = 151 bits (76), Expect = 3e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 431 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 372 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| | Sbjct: 371 cagcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacct 312 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 311 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 272 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 228 ttcttgtgctgctttcggtacatagcagtccagcaaag 191
>gb|AY058086.1| Arabidopsis thaliana At2g36620/F1O11.25 mRNA, complete cds Length = 675 Score = 151 bits (76), Expect = 3e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 429 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 370 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| | Sbjct: 369 cagcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacct 310 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 309 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 270 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 226 ttcttgtgctgctttcggtacatagcagtccagcaaag 189
>gb|AY085323.1| Arabidopsis thaliana clone 14564 mRNA, complete sequence Length = 677 Score = 151 bits (76), Expect = 3e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 437 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 378 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| | Sbjct: 377 cagcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacct 318 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 317 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 278 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 234 ttcttgtgctgctttcggtacatagcagtccagcaaag 197
>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24 gene) Length = 1310 Score = 151 bits (76), Expect = 3e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| || | Sbjct: 418 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcacgtaggg 359 Query: 327 cggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataactt 386 | |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| | Sbjct: 358 cagcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacct 299 Query: 387 ccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||| || ||||| |||||||||| |||||| |||||||| Sbjct: 298 ccaaagtagcaccgacaatcgaccttgagtaaggcttctt 259 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 215 ttcttgtgctgctttcggtacatagcagtccagcaaag 178
>gb|BT013177.1| Lycopersicon esculentum clone 134253R, mRNA sequence Length = 781 Score = 131 bits (66), Expect = 2e-27 Identities = 162/194 (83%) Strand = Plus / Minus Query: 260 acctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctca 319 |||||||| ||||| |||||||| |||||||| ||||||||||| | ||||| || ||| Sbjct: 430 acctctgctttcttagccttcttttcatcctttgtcttcttgatcctttccttaatttca 371 Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 |||||||| || || ||||||||||| || ||||| ||| | |||| |||||||||||| Sbjct: 370 cgaagagcagcctccctggcagcatctcgaacttctggcctttcagttctcttcttctgg 311 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 || || |||| || ||||| ||||| |||| ||||| |||||||||||||| || ||| Sbjct: 310 attacctccaaggttgcacccacaatagacctagagtaaggcttcttggtggtacgtcgc 251 Query: 440 ctcttcttggcagc 453 |||||||| ||||| Sbjct: 250 ctcttcttagcagc 237
>gb|AY310816.1| Nicotiana benthamiana clone 12-370 unknown mRNA Length = 476 Score = 129 bits (65), Expect = 1e-26 Identities = 158/189 (83%) Strand = Plus / Minus Query: 259 cacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctc 318 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| || Sbjct: 240 cacctctgccttcttggccttcttctcatcctttgtcttcttgatcctttccttgatttc 181 Query: 319 acgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctg 378 ||| ||||| || || || |||||||| | ||||| ||| | |||| ||||||||||| Sbjct: 180 acggagagcagcctccctagcagcatctctaacttctggcctttcagttctcttcttctg 121 Query: 379 gataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcg 438 |||||| ||||| || ||||| ||||| |||| ||||| |||||||| || | || || Sbjct: 120 gataacctccagggttgcacccacaatggacctggagtaaggcttctttgttgcacgtcg 61 Query: 439 cctcttctt 447 ||||||||| Sbjct: 60 cctcttctt 52 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgt 499 |||||||||||||||||| |||| ||||| Sbjct: 29 ttcttgtgctgcttcctgcacatagctgt 1
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 1e-26 Identities = 113/129 (87%) Strand = Plus / Minus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 |||||||||| ||| || || |||||||| || || ||||||||||| |||||||||||| Sbjct: 6898304 cgaagagcggattcccttgctgcatcacgaacctctggcttctcagctctcttcttctgg 6898245 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 || ||||| || || |||||||| || ||||| |||||||| |||||||||||||||||| Sbjct: 6898244 atgacttcaagggtagcaccaactatagaccgggagtacggtttcttggtggtgcggcgc 6898185 Query: 440 ctcttcttg 448 ||||||||| Sbjct: 6898184 ctcttcttg 6898176 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 259 cacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctc 318 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 6898697 cacctctgccttcttcgctttcttctcgtcctttgtcttcttgatgcgctccttgatctc 6898638 Query: 319 ac 320 || Sbjct: 6898637 ac 6898636 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtcca 502 |||||||||||||| |||||||| |||||||| Sbjct: 6897875 ttcttgtgctgctttctgtacatggctgtcca 6897844
>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0668C05 Length = 142081 Score = 129 bits (65), Expect = 1e-26 Identities = 113/129 (87%) Strand = Plus / Minus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 |||||||||| ||| || || |||||||| || || ||||||||||| |||||||||||| Sbjct: 22119 cgaagagcggattcccttgctgcatcacgaacctctggcttctcagctctcttcttctgg 22060 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 || ||||| || || |||||||| || ||||| |||||||| |||||||||||||||||| Sbjct: 22059 atgacttcaagggtagcaccaactatagaccgggagtacggtttcttggtggtgcggcgc 22000 Query: 440 ctcttcttg 448 ||||||||| Sbjct: 21999 ctcttcttg 21991 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 259 cacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctc 318 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 22512 cacctctgccttcttcgctttcttctcgtcctttgtcttcttgatgcgctccttgatctc 22453 Query: 319 ac 320 || Sbjct: 22452 ac 22451 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtcca 502 |||||||||||||| |||||||| |||||||| Sbjct: 21690 ttcttgtgctgctttctgtacatggctgtcca 21659
>emb|AJ225027.1|CAR225027 Cicer arietinum mRNA for ribosomal protein L24 Length = 697 Score = 129 bits (65), Expect = 1e-26 Identities = 155/185 (83%) Strand = Plus / Minus Query: 263 tctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacga 322 ||||| |||||||| |||||||||||||| || |||||||| | |||||| || |||||| Sbjct: 421 tctgctttcttggctttcttctcatccttagttttcttgattctctccttaatttcacga 362 Query: 323 agagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggata 382 ||||| ||||| || || |||||||| |||||||||||||||| || |||||||| || Sbjct: 361 agagcagcttccctagcggcatcacgaacttcaggcttctcagttcttttcttctgaatg 302 Query: 383 acttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgcctc 442 ||||||| || ||||||||||| |||| ||||| ||||| ||||| | || |||||| Sbjct: 301 acttccaaagtagcaccaacaatggacctagagtatggctttttggtagcacgacgcctc 242 Query: 443 ttctt 447 ||||| Sbjct: 241 ttctt 237
>dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_B03 Length = 108992 Score = 129 bits (65), Expect = 1e-26 Identities = 113/129 (87%) Strand = Plus / Minus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 |||||||||| ||| || || |||||||| || || ||||||||||| |||||||||||| Sbjct: 54559 cgaagagcggattcccttgctgcatcacgaacctctggcttctcagctctcttcttctgg 54500 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 || ||||| || || |||||||| || ||||| |||||||| |||||||||||||||||| Sbjct: 54499 atgacttcaagggtagcaccaactatagaccgggagtacggtttcttggtggtgcggcgc 54440 Query: 440 ctcttcttg 448 ||||||||| Sbjct: 54439 ctcttcttg 54431 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 259 cacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctc 318 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 54952 cacctctgccttcttcgctttcttctcgtcctttgtcttcttgatgcgctccttgatctc 54893 Query: 319 ac 320 || Sbjct: 54892 ac 54891 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtcca 502 |||||||||||||| |||||||| |||||||| Sbjct: 54130 ttcttgtgctgctttctgtacatggctgtcca 54099
>gb|DQ268857.1| Solanum tuberosum clone 174B08 ribosomal protein L24-like protein mRNA, complete cds Length = 706 Score = 115 bits (58), Expect = 1e-22 Identities = 145/174 (83%) Strand = Plus / Minus Query: 258 tcacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatct 317 ||||||||||||||||||||||||| || ||||| || |||||||| | |||||||| | Sbjct: 447 tcacctctgccttcttggccttcttttcgtcctttgttttcttgattctttccttgattt 388 Query: 318 cacgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttct 377 |||||||||| || || ||||||||||| || ||||| ||| | ||||| |||||||||| Sbjct: 387 cacgaagagcagcctccctggcagcatctcgaacttctggcctttcagctctcttcttct 328 Query: 378 ggataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 |||| || |||| || ||||| ||||| |||| ||||| || ||||| |||| Sbjct: 327 ggattacctccaaggttgcacccacaatggacctagagtaaggtttctttgtgg 274 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtcca 502 ||||||||||||||||||||||| || ||||| Sbjct: 235 ttcttgtgctgcttcctgtacatggcagtcca 204
>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2 Length = 99814 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 323 agagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggata 382 ||||| ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 84379 agagcagcttccctggctgcatcacgaacttcaggcttctcagctctcttcttctgaatt 84438 Query: 383 acttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtgg 431 ||||||| || ||||||||||| |||| |||||| ||||||||||||| Sbjct: 84439 acttccaaggtagcaccaacaatggaccttgagtatggcttcttggtgg 84487 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcac 320 ||||||| |||||||| ||||| |||||||| ||||| | ||||||||||||| Sbjct: 84230 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcac 84283
>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181, complete sequence Length = 185320 Score = 89.7 bits (45), Expect = 8e-15 Identities = 114/137 (83%) Strand = Plus / Minus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 ||||||||||||||||| |||||||| || || |||||||| |||| ||| | ||||| Sbjct: 61611 cgaagagcggcttctctagcagcatctcgaacctcaggcttttcagttctccttttctga 61552 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 |||||||||| ||| ||||||||||| |||| ||||| ||||| ||||| | ||| ||| Sbjct: 61551 ataacttccaatgtagcaccaacaattgacctggagtaaggctttttggtagagcgacgc 61492 Query: 440 ctcttcttggcagcctc 456 ||||| | |||||||| Sbjct: 61491 ttcttcctcgcagcctc 61475 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 263 tctgccttcttggccttcttctcatccttggtcttcttga 302 ||||||||||| ||| ||||||||||||| || ||||||| Sbjct: 61816 tctgccttctttgccctcttctcatcctttgttttcttga 61777
>dbj|AP004955.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19K21, TM0132, complete sequence Length = 59303 Score = 89.7 bits (45), Expect = 8e-15 Identities = 114/137 (83%) Strand = Plus / Minus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 ||||||||||||||||| |||||||| || || |||||||| |||| ||| | ||||| Sbjct: 41091 cgaagagcggcttctctagcagcatctcgaacctcaggcttttcagttctccttttctga 41032 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggtggtgcggcgc 439 |||||||||| ||| ||||||||||| |||| ||||| ||||| ||||| | ||| ||| Sbjct: 41031 ataacttccaatgtagcaccaacaattgacctggagtaaggctttttggtagagcgacgc 40972 Query: 440 ctcttcttggcagcctc 456 ||||| | |||||||| Sbjct: 40971 ttcttcctcgcagcctc 40955 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 263 tctgccttcttggccttcttctcatccttggtcttcttga 302 ||||||||||| ||| ||||||||||||| || ||||||| Sbjct: 41296 tctgccttctttgccctcttctcatcctttgttttcttga 41257
>gb|AC006919.6| Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence Length = 104364 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 329 gcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataacttcc 388 |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| ||| Sbjct: 99856 gcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacctcc 99915 Query: 389 agtgtggcaccaacaatcgaccgtgagtacggcttctt 426 | || ||||| |||||||||| |||||| |||||||| Sbjct: 99916 aaagtagcaccgacaatcgaccttgagtaaggcttctt 99953 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcac 320 ||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| Sbjct: 99700 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcac 99753 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Plus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 100085 ttcttgtgctgctttcggtacatagcagtccagcaaag 100122
>gb|AC006282.4| Arabidopsis thaliana chromosome 2 clone F13K3 map g6825, complete sequence Length = 92376 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 329 gcttctctggcagcatcacggacttcaggcttctcagccctcttcttctggataacttcc 388 |||||||| || |||||||| |||||||||||||| || | ||||||||| ||||| ||| Sbjct: 2180 gcttctctagcggcatcacgaacttcaggcttctctgctcgcttcttctgaataacctcc 2239 Query: 389 agtgtggcaccaacaatcgaccgtgagtacggcttctt 426 | || ||||| |||||||||| |||||| |||||||| Sbjct: 2240 aaagtagcaccgacaatcgaccttgagtaaggcttctt 2277 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcac 320 ||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| Sbjct: 2024 ccttctttgccttcttctcgtccttggtcttcttgattctctccttgatctcac 2077 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Plus Query: 471 ttcttgtgctgcttcctgtacattgctgtccagcaaag 508 |||||||||||||| | |||||| || ||||||||||| Sbjct: 2409 ttcttgtgctgctttcggtacatagcagtccagcaaag 2446
>emb|AJ617049.1| Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np221 Length = 322 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 258 tcacctctgccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatct 317 |||||||||| ||||| |||||||| |||||||| ||||||||||| | |||||||| | Sbjct: 235 tcacctctgctttcttagccttcttttcatcctttgtcttcttgattctttccttgattt 294 Query: 318 cacgaagagcggcttctctggcagcatc 345 |||| ||||| || || || |||||||| Sbjct: 295 cacggagagcagcctccctagcagcatc 322 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 179 ccgccgccaccgccaagctttgggccctt 207 |||||||| ||||||||||| |||||||| Sbjct: 150 ccgccgccgccgccaagcttagggccctt 178
>gb|AC146788.13| Medicago truncatula clone mth2-11a6, complete sequence Length = 116349 Score = 67.9 bits (34), Expect = 3e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 ||||| || ||||||||||||||||| || || || ||||| || | |||||||| || Sbjct: 106370 cgaagggcagcttctctggcagcatcccgaacctctggcttttctgatctcttcttttga 106429 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggt 429 |||||||||| || ||||||||||| |||| |||||| ||||| ||||| Sbjct: 106430 ataacttccaaagtagcaccaacaatggaccttgagtaaggctttttggt 106479 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 263 tctgccttcttggccttcttctcatccttggtcttctt 300 ||||||||||| ||||||||||||||||| || ||||| Sbjct: 106154 tctgccttcttcgccttcttctcatcctttgttttctt 106191
>gb|AC139525.3| Medicago truncatula clone mth2-26o22, complete sequence Length = 103039 Score = 67.9 bits (34), Expect = 3e-08 Identities = 91/110 (82%) Strand = Plus / Minus Query: 320 cgaagagcggcttctctggcagcatcacggacttcaggcttctcagccctcttcttctgg 379 ||||| || ||||||||||||||||| || || || ||||| || | |||||||| || Sbjct: 13375 cgaagggcagcttctctggcagcatcccgaacctctggcttttctgatctcttcttttga 13316 Query: 380 ataacttccagtgtggcaccaacaatcgaccgtgagtacggcttcttggt 429 |||||||||| || ||||||||||| |||| |||||| ||||| ||||| Sbjct: 13315 ataacttccaaagtagcaccaacaatggaccttgagtaaggctttttggt 13266 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 263 tctgccttcttggccttcttctcatccttggtcttctt 300 ||||||||||| ||||||||||||||||| || ||||| Sbjct: 13591 tctgccttcttcgccttcttctcatcctttgttttctt 13554
>dbj|AK221088.1| Arabidopsis thaliana mRNA for 60S ribosomal protein - like, partial cds, clone: RAFL22-82-K11 Length = 343 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttggtcttcttgatgcgctccttgatctcacgaagag 326 ||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||| |||| Sbjct: 68 ccttcttagccttcttttcatctttggtctttttgattctttccttgatctcacgcagag 9 Query: 327 cggcttc 333 | ||||| Sbjct: 8 cagcttc 2
>gb|AY310767.1| Nicotiana benthamiana clone 7-269 unknown mRNA Length = 375 Score = 58.0 bits (29), Expect = 3e-05 Identities = 114/141 (80%), Gaps = 1/141 (0%) Strand = Plus / Minus Query: 308 tccttgatctcacg-aagagcggcttctctggcagcatcacggacttcaggcttctcagc 366 |||||||| ||||| |||||| || || || |||||||| | ||||| ||| | |||| Sbjct: 358 tccttgatttcacggaagagcagcctccctagcagcatctctaacttctggcctttcagt 299 Query: 367 cctcttcttctggataacttccagtgtggcaccaacaatcgaccgtgagtacggcttctt 426 ||||||||||||||||| ||||| || ||||| ||||| |||| ||||| |||||||| Sbjct: 298 tctcttcttctggataacctccagggttgcacccacaatggacctggagtaaggcttctt 239 Query: 427 ggtggtgcggcgcctcttctt 447 || | || ||||||||||| Sbjct: 238 tgttgcacgtcgcctcttctt 218 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtcca 502 ||||||||||||||||||||||| |||||||| Sbjct: 195 ttcttgtgctgcttcctgtacatagctgtcca 164
>dbj|AK106230.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B01, full insert sequence Length = 2034 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 471 ttcttgtgctgcttcctgtacattgctgtccag 503 ||||||||||||||||||||||| ||||||||| Sbjct: 284 ttcttgtgctgcttcctgtacatggctgtccag 252
>gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, complete sequence Length = 97951 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 262 ctctgccttcttggccttcttctc 285 |||||||||||||||||||||||| Sbjct: 83575 ctctgccttcttggccttcttctc 83598
>gb|DQ401085.1| Chlamydomonas sp. ICE-L 60S ribosomal protein mRNA, complete cds Length = 634 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 347 cggacttcaggcttctcagccctcttcttctg 378 ||||| ||||||||||||||||||||| |||| Sbjct: 341 cggacctcaggcttctcagccctcttcctctg 310
>ref|XM_504493.1| Yarrowia lipolytica CLIB122, YALI0E28153g predicted mRNA Length = 5574 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 270 tcttggccttcttctcatccttggtcttcttgatg 304 ||||||||||||||||| |||| ||||| |||||| Sbjct: 4567 tcttggccttcttctcagccttagtctttttgatg 4533
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 270 tcttggccttcttctcatccttggtcttcttgatg 304 ||||||||||||||||| |||| ||||| |||||| Sbjct: 3325574 tcttggccttcttctcagccttagtctttttgatg 3325540 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 3019354 gccttcttggccttcttctc 3019373
>ref|NM_014303.2| Homo sapiens pescadillo homolog 1, containing BRCT domain (zebrafish) (PES1), mRNA Length = 2279 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1829 tgccttcttggccttcttctca 1808
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 280 cttctcatccttggtcttcttg 301 |||||||||||||||||||||| Sbjct: 659019 cttctcatccttggtcttcttg 658998
>ref|XM_811165.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510565.50) partial mRNA Length = 1818 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 289 cttggtcttcttgatgcgctccttgatctc 318 |||| ||||||||||||||| ||||||||| Sbjct: 179 cttgatcttcttgatgcgcttcttgatctc 150
>gb|AC131249.43| Medicago truncatula clone mth2-8p18, complete sequence Length = 104866 Score = 44.1 bits (22), Expect = 0.44 Identities = 40/46 (86%) Strand = Plus / Plus Query: 317 tcacgaagagcggcttctctggcagcatcacggacttcaggcttct 362 ||||||||||| ||||| || |||||||| || || |||||||||| Sbjct: 47993 tcacgaagagcagcttccctagcagcatctcgaacctcaggcttct 48038
>gb|BC018848.1| Homo sapiens cDNA clone IMAGE:3141182, **** WARNING: chimeric clone **** Length = 3082 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 662 tgccttcttggccttcttctca 641
>emb|AL360089.13| Human DNA sequence from clone RP11-284P20 on chromosome 9 Contains the 3' end of a novel gene, a pescadillo homolog 1, containing BRCT domain (zebrafish) (PES1) pseudogene, a novel gene and a ribosomal protein L3 (RPL3) pseudogene, complete sequence Length = 129263 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 53600 tgccttcttggccttcttctca 53579
>dbj|AK125778.1| Homo sapiens cDNA FLJ43790 fis, clone TESTI2053399, moderately similar to Homo sapiens pescadillo 1, containing BRCT domain (zebrafish) (PES1) Length = 1732 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1310 tgccttcttggccttcttctca 1289
>dbj|AK127185.1| Homo sapiens cDNA FLJ45250 fis, clone BRHIP2008756, moderately similar to Homo sapiens pescadillo 1, containing BRCT domain (zebrafish) (PES1) Length = 2691 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 2261 tgccttcttggccttcttctca 2240
>emb|CR620678.1| full-length cDNA clone CS0DA004YI10 of Neuroblastoma of Homo sapiens (human) Length = 2144 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1751 tgccttcttggccttcttctca 1730
>emb|CR620248.1| full-length cDNA clone CS0DG005YL14 of B cells (Ramos cell line) of Homo sapiens (human) Length = 2206 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1777 tgccttcttggccttcttctca 1756
>emb|CR611212.1| full-length cDNA clone CS0DE011YP13 of Placenta of Homo sapiens (human) Length = 2170 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1793 tgccttcttggccttcttctca 1772
>emb|CR608268.1| full-length cDNA clone CS0DI042YA02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2207 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1802 tgccttcttggccttcttctca 1781
>emb|CR608043.1| full-length cDNA clone CS0DF016YB22 of Fetal brain of Homo sapiens (human) Length = 2196 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1802 tgccttcttggccttcttctca 1781
>emb|CR607661.1| full-length cDNA clone CS0DA001YJ13 of Neuroblastoma of Homo sapiens (human) Length = 2239 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1809 tgccttcttggccttcttctca 1788
>emb|CR607111.1| full-length cDNA clone CS0DA005YI24 of Neuroblastoma of Homo sapiens (human) Length = 2194 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1803 tgccttcttggccttcttctca 1782
>dbj|AK096320.1| Homo sapiens cDNA FLJ39001 fis, clone NT2RI2022584, highly similar to Homo sapiens pescadillo mRNA Length = 2705 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 2279 tgccttcttggccttcttctca 2258
>emb|CR598932.1| full-length cDNA clone CS0DI057YB08 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2170 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1768 tgccttcttggccttcttctca 1747
>emb|CR597817.1| full-length cDNA clone CS0DI016YA07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1746 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1317 tgccttcttggccttcttctca 1296
>emb|CR597567.1| full-length cDNA clone CS0DA008YM01 of Neuroblastoma of Homo sapiens (human) Length = 2176 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1765 tgccttcttggccttcttctca 1744
>emb|BX571983.11| Zebrafish DNA sequence from clone DKEY-18M7 in linkage group 11, complete sequence Length = 248929 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggcag 452 |||||||||||||||||||||| Sbjct: 208906 gtgcggcgcctcttcttggcag 208927
>dbj|AB029901.2| Homo sapiens CST gene for cerebroside sulfotransferase, complete cds Length = 25926 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 3287 tgccttcttggccttcttctca 3266
>gb|AC005006.2|AC005006 Homo sapiens clone RP1-56J10, complete sequence Length = 101720 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 26340 tgccttcttggccttcttctca 26361
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 289 cttggtcttcttgatgcgctccttgatctc 318 ||||||||||||||||||| ||| |||||| Sbjct: 6961885 cttggtcttcttgatgcgcgcctcgatctc 6961856
>gb|AY893015.1| Synthetic construct Homo sapiens clone FLH119699.01L pescadillo-like 1 containing BRCT domain (PES1) mRNA, partial cds Length = 1767 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1755 tgccttcttggccttcttctca 1734
>gb|AY890547.1| Synthetic construct Homo sapiens clone FLH119703.01X pescadillo-like 1 containing BRCT domain (PES1) mRNA, complete cds Length = 1767 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1755 tgccttcttggccttcttctca 1734
>gb|BC032489.1| Homo sapiens pescadillo homolog 1, containing BRCT domain (zebrafish), mRNA (cDNA clone MGC:40305 IMAGE:5416478), complete cds Length = 2285 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1819 tgccttcttggccttcttctca 1798
>emb|CR456539.1| Homo sapiens PES1 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.PES1) Length = 1988 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1765 tgccttcttggccttcttctca 1744
>emb|AJ495850.1|PLI495850 Paracentrotus lividus partial dnmt1 gene for DNA methyltransferase, exon 17 Length = 581 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttg 292 ||||||| |||||||||||||||||| Sbjct: 537 ccttcttagccttcttctcatccttg 512
>gb|U78310.1|HSU78310 Homo sapiens pescadillo mRNA, complete cds Length = 2257 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tgccttcttggccttcttctca 286 |||||||||||||||||||||| Sbjct: 1813 tgccttcttggccttcttctca 1792
>emb|Z50183.1|PLDNACMT P.lividus mRNA for DNA (cytosine-5-)-methyltransferase Length = 7170 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcatccttg 292 ||||||| |||||||||||||||||| Sbjct: 2213 ccttcttagccttcttctcatccttg 2188
>ref|NM_053379.2| Rattus norvegicus doublecortin (Dcx), mRNA Length = 8814 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 163 ccttcttggccttcttctcat 143
>gb|AY560329.1| Mus musculus doublecortin (Dcx) mRNA, complete cds Length = 2920 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 223 ccttcttggccttcttctcat 203
>gb|AC184800.2| Pan troglodytes chromosome X clone PTB-18K16 map human ortholog p11.23, complete sequence Length = 142154 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 aggataagaaacaaggctagg 134 ||||||||||||||||||||| Sbjct: 42519 aggataagaaacaaggctagg 42499
>ref|NM_023868.1| Mus musculus ryanodine receptor 2, cardiac (Ryr2), mRNA Length = 14904 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 tcttggccttcttctcatcct 290 ||||||||||||||||||||| Sbjct: 12839 tcttggccttcttctcatcct 12859
>gb|BC056391.1| Mus musculus doublecortin, mRNA (cDNA clone MGC:73924 IMAGE:6855006), complete cds Length = 4011 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 228 ccttcttggccttcttctcat 208
>gb|BC057010.1| Mus musculus doublecortin, mRNA (cDNA clone MGC:67049 IMAGE:6825750), complete cds Length = 4102 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 320 ccttcttggccttcttctcat 300
>gb|BC062974.1| Mus musculus doublecortin, mRNA (cDNA clone MGC:61189 IMAGE:6825750), complete cds Length = 4102 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 320 ccttcttggccttcttctcat 300
>emb|CR701428.2|CNS0G468 Tetraodon nigroviridis full-length cDNA Length = 528 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tcacagaaaaggtgcaaattc 71 ||||||||||||||||||||| Sbjct: 231 tcacagaaaaggtgcaaattc 251
>emb|CR685071.2|CNS0FRJV Tetraodon nigroviridis full-length cDNA Length = 1377 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tcacagaaaaggtgcaaattc 71 ||||||||||||||||||||| Sbjct: 1029 tcacagaaaaggtgcaaattc 1049
>emb|AL009172.1|HS212G6 Human DNA sequence from clone RP1-212G6 on chromosome Xp11.3-11.4 Contains the 5'end of the SYN1 gene for synapsin I, the PFC gene for properdin P factor (complement), the ELK1 member of the ETS oncogene family, the UTX gene for ubiquitously-expressed transcript, an SMS (spermine synthase) pseudogene, a novel gene (LOC286403) and three CpG islands, complete sequence Length = 156601 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 aggataagaaacaaggctagg 134 ||||||||||||||||||||| Sbjct: 95869 aggataagaaacaaggctagg 95849
>emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE Length = 115705 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 317 tcacgaagagcggcttctctggcagcatc 345 ||||||||| | ||||||||||||||||| Sbjct: 61840 tcacgaagatcagcttctctggcagcatc 61812
>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence Length = 195714 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 tcttggccttcttctcatcct 290 ||||||||||||||||||||| Sbjct: 71904 tcttggccttcttctcatcct 71884
>emb|X83933.1|MMRNARYR2 M.musculus mRNA for ryanodine receptor type 2 Length = 3859 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 tcttggccttcttctcatcct 290 ||||||||||||||||||||| Sbjct: 405 tcttggccttcttctcatcct 425
>ref|NM_010025.2| Mus musculus doublecortin (Dcx), mRNA Length = 8982 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 335 ccttcttggccttcttctcat 315
>dbj|AK164119.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530035O19 product:doublecortin, full insert sequence Length = 3985 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 222 ccttcttggccttcttctcat 202
>dbj|AK049050.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230095H06 product:doublecortin, full insert sequence Length = 3195 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 409 ccttcttggccttcttctcat 389
>dbj|AK048410.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130058C09 product:doublecortin, full insert sequence Length = 2619 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 341 ccttcttggccttcttctcat 321
>dbj|AK014264.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110080G17 product:doublecortin, full insert sequence Length = 1333 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 336 ccttcttggccttcttctcat 316
>gb|AF155959.2| Rattus norvegicus neuronal migration protein doublecortin mRNA, complete cds Length = 8814 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 163 ccttcttggccttcttctcat 143
>gb|AF295105.1|AF295105 Mus musculus cardiac Ca2+ release channel mRNA, complete cds Length = 14904 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 tcttggccttcttctcatcct 290 ||||||||||||||||||||| Sbjct: 12839 tcttggccttcttctcatcct 12859
>ref|XM_576940.1| PREDICTED: Rattus norvegicus similar to doublecortin isoform a (LOC501537), mRNA Length = 2315 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 355 ccttcttggccttcttctcat 335
>emb|BX530055.9| Mouse DNA sequence from clone RP23-462G16 on chromosome X, complete sequence Length = 168373 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 138397 ccttcttggccttcttctcat 138417
>gb|AF045547.1|AF045547 Mus musculus doublecortin (Dcx) mRNA, complete cds Length = 1199 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 216 ccttcttggccttcttctcat 196
>dbj|AB011678.1| Mus musculus mRNA for doublecortin, complete cds Length = 9113 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 ccttcttggccttcttctcat 287 ||||||||||||||||||||| Sbjct: 431 ccttcttggccttcttctcat 411
>ref|NM_111769.1| Arabidopsis thaliana unknown protein AT3G09350 mRNA, complete cds Length = 1466 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 916 cacgaagagcggcttctctg 897
>ref|XM_525640.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ30473 (LOC470257), mRNA Length = 1755 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttctcatccttggtcttct 299 |||||||||||||||||||| Sbjct: 447 cttctcatccttggtcttct 428
>ref|XM_518333.1| PREDICTED: Pan troglodytes similar to TNFalpha-inducible ATP-binding protein (LOC462543), mRNA Length = 2398 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 556 ctctgccttcttggccttct 537
>ref|XM_517476.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 6330415M09 (LOC461534), mRNA Length = 1972 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 255 gccttcttggccttcttctc 236
>gb|AY601882.1| Chlamydomonas reinhardtii central pair complex 1 (CPC1) mRNA, complete cds Length = 6261 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gccgccgccaccgccaagct 197 |||||||||||||||||||| Sbjct: 1137 gccgccgccaccgccaagct 1156
>gb|AY601881.1| Chlamydomonas reinhardtii central pair complex 1 (CPC1) gene, complete cds Length = 9716 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gccgccgccaccgccaagct 197 |||||||||||||||||||| Sbjct: 2220 gccgccgccaccgccaagct 2239
>gb|AC100737.18| Mus musculus chromosome 7, clone RP24-360I22, complete sequence Length = 148090 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tcttctcatccttggtcttc 298 |||||||||||||||||||| Sbjct: 40522 tcttctcatccttggtcttc 40503
>ref|XM_616231.2| PREDICTED: Bos taurus similar to doublecortin kinase 2 (LOC536110), mRNA Length = 3347 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 232 gccttcttggccttcttctc 213
>ref|XM_869267.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family F, member 1 isoform b (LOC617082), mRNA Length = 1138 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 727 ctctgccttcttggccttct 708
>ref|XM_603695.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family F, member 1 isoform b (LOC525343), mRNA Length = 1705 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 417 ctctgccttcttggccttct 398
>ref|XM_870850.1| PREDICTED: Bos taurus similar to Voltage-dependent calcium channel gamma-8 subunit (Neuronal voltage-gated calcium channel gamma-8 subunit) (LOC618518), mRNA Length = 927 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cgcttgccgccgccaccgcc 192 |||||||||||||||||||| Sbjct: 35 cgcttgccgccgccaccgcc 16
>gb|AC115045.13| Mus musculus chromosome 6, clone RP24-315D19, complete sequence Length = 177917 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcacagaaaaggtgcaaatt 70 |||||||||||||||||||| Sbjct: 102870 tcacagaaaaggtgcaaatt 102851
>ref|NM_001040261.1| Homo sapiens doublecortin and CaM kinase-like 2 (DCAMKL2), transcript variant 2, mRNA Length = 3600 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 321 gccttcttggccttcttctc 302
>ref|NM_001040260.1| Homo sapiens doublecortin and CaM kinase-like 2 (DCAMKL2), transcript variant 1, mRNA Length = 3603 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 321 gccttcttggccttcttctc 302
>ref|XM_951811.1| Neurospora crassa OR74A hypothetical protein (NCU01698.1) partial mRNA Length = 189 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tcttcttggcagcctcagca 460 |||||||||||||||||||| Sbjct: 184 tcttcttggcagcctcagca 165
>ref|XM_328136.1| Neurospora crassa OR74A hypothetical protein (NCU01698.1) partial mRNA Length = 189 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tcttcttggcagcctcagca 460 |||||||||||||||||||| Sbjct: 184 tcttcttggcagcctcagca 165
>ref|NM_027539.3| Mus musculus doublecortin and CaM kinase-like 2 (Dcamkl2), mRNA Length = 4032 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 903 gccttcttggccttcttctc 884
>gb|L25599.1| Caenorhabditis elegans cosmid F54H12, complete sequence Length = 19168 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 14823 gccttcttggccttcttctc 14842
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 tcacggacttcaggcttctcagcc 367 ||||| |||||||||||||||||| Sbjct: 495653 tcacgcacttcaggcttctcagcc 495676
>ref|NM_001025091.1| Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 1 (ABCF1), transcript variant 1, mRNA Length = 3474 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 770 ctctgccttcttggccttct 751
>ref|NM_001090.2| Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 1 (ABCF1), transcript variant 2, mRNA Length = 3360 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 770 ctctgccttcttggccttct 751
>gb|AC147051.2| Mus musculus BAC clone RP23-90H22 from chromosome 8, complete sequence Length = 224213 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tgcaaattcaagagggcaag 82 |||||||||||||||||||| Sbjct: 25363 tgcaaattcaagagggcaag 25344
>gb|AC136018.5| Mus musculus BAC clone RP24-125E6 from chromosome 7, complete sequence Length = 210491 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcacagaaaaggtgcaaatt 70 |||||||||||||||||||| Sbjct: 83342 tcacagaaaaggtgcaaatt 83323
>gb|DQ016670.1| Uncultured Actinomyces sp. clone 8.3.3 16S ribosomal RNA gene, partial sequence Length = 505 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gccctcttcttctggataac 384 |||||||||||||||||||| Sbjct: 109 gccctcttcttctggataac 128
>gb|DQ016669.1| Uncultured Actinomyces sp. clone 8.2.3 16S ribosomal RNA gene, partial sequence Length = 505 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gccctcttcttctggataac 384 |||||||||||||||||||| Sbjct: 109 gccctcttcttctggataac 128
>emb|BX950198.13| Zebrafish DNA sequence from clone CH211-214G3 in linkage group 24, complete sequence Length = 196308 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 78314 gtgcggcgcctcttcttggc 78333
>ref|XM_539760.2| PREDICTED: Canis familiaris similar to doublecortin kinase 2 (LOC482642), mRNA Length = 2589 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 221 gccttcttggccttcttctc 202
>gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosome 8, complete sequence Length = 130946 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tgcaaattcaagagggcaag 82 |||||||||||||||||||| Sbjct: 90476 tgcaaattcaagagggcaag 90457
>gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome 3, complete sequence Length = 181261 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 55209 gccttcttggccttcttctc 55228
>ref|XM_532056.2| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) (LOC474826), mRNA Length = 2917 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 664 ctctgccttcttggccttct 645
>gb|AC011436.7|ATAC011436 Arabidopsis thaliana chromosome III BAC F3L24 genomic sequence, complete sequence Length = 106688 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 69345 cacgaagagcggcttctctg 69326
>emb|BX927125.18| Zebrafish DNA sequence from clone CH211-122L24 in linkage group 2, complete sequence Length = 165489 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 68962 gtgcggcgcctcttcttggc 68943
>gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complete sequence Length = 155637 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tgcaaattcaagagggcaag 82 |||||||||||||||||||| Sbjct: 46393 tgcaaattcaagagggcaag 46374
>gb|AC003990.2| Homo sapiens BAC clone CTB-35M2 from 7, complete sequence Length = 78794 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 gcatggatgtcctttcttgt 477 |||||||||||||||||||| Sbjct: 27361 gcatggatgtcctttcttgt 27342
>gb|AC109166.10| Mus musculus chromosome 7, clone RP23-310P1, complete sequence Length = 168878 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcacagaaaaggtgcaaatt 70 |||||||||||||||||||| Sbjct: 153292 tcacagaaaaggtgcaaatt 153273
>emb|CR376723.15| Zebrafish DNA sequence from clone DKEY-90N12 in linkage group 8, complete sequence Length = 213541 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 49910 gtgcggcgcctcttcttggc 49929
>emb|BX119957.13| Human DNA sequence from clone DASS-182C6 on chromosome 6, complete sequence Length = 112118 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 9131 ctctgccttcttggccttct 9112
>emb|BX000357.7| Human DNA sequence from clone DAQB-256B5 on chromosome 6 Contains the GNL1 gene for guanine nucleotide binding protein-like 1, the PRR3 gene for proline-rich polypeptide 3, the ABCF1 gene for ATP-binding cassette, sub-family F (GCN20), member 1 and 2 CpG islands, complete sequence Length = 64172 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 46038 ctctgccttcttggccttct 46019
>emb|AL662825.5| Human DNA sequence from clone XXbac-98J21 on chromosome 6 contains the GNL1 gene for guanine nucleotide binding protein-like 1, the gene for CAT56 protein, the ABCF1 gene for ATP-binding cassette, subfamily F, member 1, the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the 5' end of the MRPS18B gene for mitochondrial ribosomal protein S18B and three CpG islands, complete sequence Length = 81768 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 37866 ctctgccttcttggccttct 37847
>emb|AL662800.4| Human DNA sequence from clone XXbac-249D20 on chromosome 6 contains the GNL1 gene for guanine nucleotide binding protein-like 1, the gene for CAT56 protein, the ABCF1 gene for ATP-binding cassette, subfamily F, member 1, the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the MRPS18B gene for mitochondrial ribosomal protein S18B, two novel proteins, a prothymosin alpha (PTMA) pseudogene and four CpG islands, complete sequence Length = 151228 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 80691 ctctgccttcttggccttct 80672
>ref|XM_504385.1| Yarrowia lipolytica CLIB122, YALI0E25201g predicted mRNA Length = 4068 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 1346 gccttcttggccttcttctc 1327
>ref|XM_781978.1| PREDICTED: Strongylocentrotus purpuratus similar to DNA topoisomerase II, alpha isozyme (LOC582001), mRNA Length = 3024 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ctgccttcttggccttcttc 283 |||||||||||||||||||| Sbjct: 2074 ctgccttcttggccttcttc 2055
>emb|AL929028.29| Zebrafish DNA sequence from clone CH211-13F6 in linkage group 20, complete sequence Length = 182372 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 29733 gtgcggcgcctcttcttggc 29714
>gb|AE008871.1| Salmonella typhimurium LT2, section 175 of 220 of the complete genome Length = 20651 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgc 185 |||||||||||||||||||| Sbjct: 955 ctttcaacgcttgccgccgc 936
>gb|BC034488.2| Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 1, transcript variant 1, mRNA (cDNA clone MGC:26501 IMAGE:4826422), complete cds Length = 3204 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 715 ctctgccttcttggccttct 696
>emb|AL834498.1|HSM805609 Homo sapiens mRNA; cDNA DKFZp761I032 (from clone DKFZp761I032) Length = 3355 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 22 gccttcttggccttcttctc 3
>emb|AL513408.1|NC61D6 Neurospora crassa DNA linkage group II Cosmid clone 61D6 Length = 38848 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 tcttcttggcagcctcagca 460 |||||||||||||||||||| Sbjct: 26673 tcttcttggcagcctcagca 26692
>emb|BX571945.15| Zebrafish DNA sequence from clone DKEY-267I17 in linkage group 5, complete sequence Length = 192769 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 12283 gcggcgcctcttcttggcag 12264
>emb|CR753328.11| Human DNA sequence from clone DADB-129D20 on chromosome 6, complete sequence Length = 105135 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 4732 ctctgccttcttggccttct 4713
>emb|BX537261.7| Zebrafish DNA sequence from clone DKEY-73F6 in linkage group 14, complete sequence Length = 135268 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 120392 gtgcggcgcctcttcttggc 120373
>emb|CR759778.8| Human DNA sequence from clone DAMC-83F13 on chromosome 6, complete sequence Length = 88815 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 5242 ctctgccttcttggccttct 5223
>emb|CR858735.1| Pongo pygmaeus mRNA; cDNA DKFZp459N0651 (from clone DKFZp459N0651) Length = 3373 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 500 gccttcttggccttcttctc 481
>gb|BC056921.1| Mus musculus doublecortin and CaM kinase-like 2, mRNA (cDNA clone MGC:66502 IMAGE:6822681), complete cds Length = 4032 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 903 gccttcttggccttcttctc 884
>emb|BX571942.11| Zebrafish DNA sequence from clone DKEY-240A24 in linkage group 11, complete sequence Length = 102110 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 53134 gcggcgcctcttcttggcag 53153
>emb|BX322792.11| Zebrafish DNA sequence from clone CH211-261I17, complete sequence Length = 174226 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 166759 gcggcgcctcttcttggcag 166778
>emb|BX321916.14| Zebrafish DNA sequence from clone DKEYP-57E9 in linkage group 20 Contains two CpG islands, complete sequence Length = 120807 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 32687 gtgcggcgcctcttcttggc 32668
>emb|BX957270.8| Zebrafish DNA sequence from clone DKEYP-14F10 in linkage group 4 Contains four CpG islands, complete sequence Length = 143792 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 58909 gtgcggcgcctcttcttggc 58890
>emb|BX247901.12| Zebrafish DNA sequence from clone CH211-206H4 in linkage group 4 Contains four CpG islands, complete sequence Length = 101223 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 57091 gtgcggcgcctcttcttggc 57110
>emb|AL627088.7| Zebrafish DNA sequence from clone RP71-1D6 in linkage group 18 Contains a CpG island, complete sequence Length = 151446 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 64241 gtgcggcgcctcttcttggc 64222
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ttctcatccttggtcttcttgatg 304 |||||||||||| ||||||||||| Sbjct: 5841404 ttctcatccttgttcttcttgatg 5841427
>gb|AC009879.8| Homo sapiens, clone RP11-346I3, complete sequence Length = 191352 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cctcttcttctggataactt 386 |||||||||||||||||||| Sbjct: 87955 cctcttcttctggataactt 87974
>emb|AL832430.1|HSM803738 Homo sapiens mRNA; cDNA DKFZp762E013 (from clone DKFZp762E013) Length = 2690 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 200 ctctgccttcttggccttct 181
>gb|AC008440.9| Homo sapiens chromosome 19 clone CTC-331H23, complete sequence Length = 169997 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cgcttgccgccgccaccgcc 192 |||||||||||||||||||| Sbjct: 102869 cgcttgccgccgccaccgcc 102850
>dbj|AB210140.1| Pan troglodytes ABCF1 gene for ATP-binding cassette, sub-family F, member 1, complete cds, cell_line: Ericka Length = 21541 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 9351 ctctgccttcttggccttct 9332
>dbj|AB210139.1| Pan troglodytes ABCF1 gene for ATP-binding cassette, sub-family F, member 1, complete cds, cell_line: Borie Length = 21541 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 9351 ctctgccttcttggccttct 9332
>emb|BX640477.6| Zebrafish DNA sequence from clone DKEY-43N16 in linkage group 10, complete sequence Length = 258048 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 209384 gcggcgcctcttcttggcag 209365
>dbj|AB202093.1| Homo sapiens ABCF1 gene for ATP-binding cassette, sub-family F (GCN20), member 1, complete cds Length = 21845 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 9688 ctctgccttcttggccttct 9669
>gb|AC147496.19| Medicago truncatula clone mth2-6i7, complete sequence Length = 148736 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 tagtaggataggataagaaacaag 128 ||||||||| |||||||||||||| Sbjct: 55021 tagtaggatgggataagaaacaag 54998
>ref|NM_001009691.2| Rattus norvegicus similar to RIKEN cDNA 6330415M09 (predicted) (RGD1308384_predicted), mRNA Length = 3458 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 301 gccttcttggccttcttctc 282
>gb|AF322044.1| Malawimonas jakobiformis chaperonin subunit alpha gene, partial cds Length = 1949 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tcttcttgatgcgctccttg 313 |||||||||||||||||||| Sbjct: 1008 tcttcttgatgcgctccttg 989
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 1211433 gccttcttggccttcttctc 1211452
>gb|AC105343.4| Homo sapiens BAC clone RP11-423J7 from 4, complete sequence Length = 155217 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 133043 gccttcttggccttcttctc 133024
>emb|BX663607.13| Zebrafish DNA sequence from clone DKEY-30P18 in linkage group 6, complete sequence Length = 216068 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 126485 gtgcggcgcctcttcttggc 126466
>gb|DP000043.1| Macaca mulatta target 106 genomic scaffold Length = 373358 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 atccttggtcttcttgatgc 305 |||||||||||||||||||| Sbjct: 272492 atccttggtcttcttgatgc 272511
>emb|BX323875.15| Zebrafish DNA sequence from clone CH211-135L21 in linkage group 17, complete sequence Length = 173617 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 157780 gcggcgcctcttcttggcag 157761
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 43711 gcggcgcctcttcttggcag 43692
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 cttcttgatgcgctccttgatctc 318 ||||||||||||||||| |||||| Sbjct: 908983 cttcttgatgcgctcctggatctc 909006
>emb|BX927220.8| Human DNA sequence from clone DAMA-199F12 on chromosome 6, complete sequence Length = 82724 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 68640 ctctgccttcttggccttct 68621
>emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in linkage group 17, complete sequence Length = 109705 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 50 gtgcggcgcctcttcttggc 31
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence Length = 147086 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttctcatccttggtcttct 299 |||||||||||||||||||| Sbjct: 11569 cttctcatccttggtcttct 11550
>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region, complete sequence Length = 235395 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttctcatccttggtcttct 299 |||||||||||||||||||| Sbjct: 203073 cttctcatccttggtcttct 203054
>dbj|AK049179.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330011I05 product:hypothetical Eukaryotic protein kinase/Doublecortin containing protein, full insert sequence Length = 3487 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 387 gccttcttggccttcttctc 368
>dbj|AK049126.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330005E20 product:similar to SERINE/THREONINE-PROTEIN KINASE DCAMKL1 (EC 2.7.1.-) (DOUBLECORTIN- LIKE AND CAM KINASE-LIKE 1) [Homo sapiens], full insert sequence Length = 2064 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 425 gccttcttggccttcttctc 406
>ref|NM_066336.2| Caenorhabditis elegans F54H12.6 (F54H12.6) mRNA, complete cds Length = 809 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 478 gccttcttggccttcttctc 459
>emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in linkage group 19, complete sequence Length = 204327 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 177357 gcggcgcctcttcttggcag 177338 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 72992 gtgcggcgcctcttcttggc 72973
>dbj|AK082633.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230072O15 product:hypothetical Eukaryotic protein kinase/Doublecortin containing protein, full insert sequence Length = 2753 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 431 gccttcttggccttcttctc 412
>gb|AF361867.1|AF361867 Azospirillum brasilense nif operon, complete sequence Length = 6045 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tcttcttgatgcgctccttg 313 |||||||||||||||||||| Sbjct: 1630 tcttcttgatgcgctccttg 1611
>emb|BX664706.9| Zebrafish DNA sequence from clone CH211-251F6 in linkage group 20, complete sequence Length = 103574 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 83023 gcggcgcctcttcttggcag 83042
>emb|BX822576.1|CNS0A5YA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1313 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 868 cacgaagagcggcttctctg 849
>emb|BX822342.1|CNS0A61D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZE12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1169 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 828 cacgaagagcggcttctctg 809
>emb|BX823625.1|CNS0A5BF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS59ZD10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 892 cacgaagagcggcttctctg 873
>dbj|AB198721.1| Mus musculus mRNA for doublecortin-like protein kinase, complete cds Length = 2466 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 292 gccttcttggccttcttctc 273
>dbj|AB197153.1| Takifugu rubripes RAF1 mRNA for serine/threonine protein kinase RAF1, complete cds Length = 2106 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 tctcatccttggtcttcttgatgc 305 |||||||||||| ||||||||||| Sbjct: 1899 tctcatccttggacttcttgatgc 1876
>gb|BT005589.1| Arabidopsis thaliana clone U50189 unknown protein (At3g09350) mRNA, complete cds Length = 1211 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 745 cacgaagagcggcttctctg 726
>gb|BT004332.1| Arabidopsis thaliana clone RAFL15-45-M16 (R50189) unknown protein (At3g09350) mRNA, complete cds Length = 1318 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 828 cacgaagagcggcttctctg 809
>ref|XM_222232.3| PREDICTED: Rattus norvegicus similar to hypothetical protein MGC10854 (predicted) (LOC304547), mRNA Length = 2232 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 tctgccttcttggccttcttctcatcct 290 |||||||||||||||| |||||| |||| Sbjct: 1880 tctgccttcttggcctccttctcttcct 1853
>gb|AY085866.1| Arabidopsis thaliana clone 19154 mRNA, complete sequence Length = 1466 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cacgaagagcggcttctctg 337 |||||||||||||||||||| Sbjct: 916 cacgaagagcggcttctctg 897
>ref|XM_579311.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330415M09 (predicted) (RGD1308384_predicted), mRNA Length = 3435 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 301 gccttcttggccttcttctc 282
>emb|BX571957.10| Zebrafish DNA sequence from clone DKEYP-117B4 in linkage group 18, complete sequence Length = 179945 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 39926 gtgcggcgcctcttcttggc 39945
>gb|DQ340384.1| Oscheius myriophila heat shock protein 90 (Hsp90) gene, partial cds Length = 875 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 cttcttggccttcttctcatcctt 291 |||||||| ||||||||||||||| Sbjct: 587 cttcttggtcttcttctcatcctt 564
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 1361673 ctctgccttcttggccttct 1361692
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 gcaaggtaacttgagaaaggtcta 101 ||||||| |||||||||||||||| Sbjct: 20371 gcaaggttacttgagaaaggtcta 20348
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 937297 ctctgccttcttggccttct 937316
>gb|AY806970.1| Uncultured Actinomyces sp. clone IS023B25 16S ribosomal RNA gene, partial sequence Length = 784 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gccctcttcttctggataac 384 |||||||||||||||||||| Sbjct: 54 gccctcttcttctggataac 73
>gb|AY888071.1| Synthetic construct Homo sapiens clone FLH159305.01L hypothetical protein MGC45428 (MGC45428) mRNA, partial cds Length = 2088 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 221 gccttcttggccttcttctc 202
>emb|AJ507295.1|AOR507295 Actinomyces oricola 16S rRNA gene, type strain CCUG 46090T Length = 1508 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gccctcttcttctggataac 384 |||||||||||||||||||| Sbjct: 108 gccctcttcttctggataac 127
>emb|AL928790.4| Zebrafish DNA sequence from clone CH211-146N9, complete sequence Length = 171673 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 43663 gtgcggcgcctcttcttggc 43682
>dbj|AB113357.1| Sus scrofa 433 kb genomic segment, located between the non-classical and classical SLA class I gene cluster, clone: BAC 1111D10 Length = 114375 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 17616 ctctgccttcttggccttct 17597
>emb|X81063.1|ASRRNA16S Actinomyces sp. 16S rRNA gene Length = 1417 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gccctcttcttctggataac 384 |||||||||||||||||||| Sbjct: 87 gccctcttcttctggataac 106
>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA Length = 2085 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 cttcttgatgcgctccttgatctc 318 ||||||||||||||||| |||||| Sbjct: 525 cttcttgatgcgctcctggatctc 502
>gb|BC032726.1| Homo sapiens doublecortin and CaM kinase-like 2, mRNA (cDNA clone MGC:45428 IMAGE:5532881), complete cds Length = 3626 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 268 gccttcttggccttcttctc 249
>emb|CR631125.9| Zebrafish DNA sequence from clone CH211-188C18, complete sequence Length = 43431 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 41081 gtgcggcgcctcttcttggc 41100
>emb|CR392007.7| Zebrafish DNA sequence from clone DKEYP-52F1 in linkage group 18, complete sequence Length = 116358 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 43056 gtgcggcgcctcttcttggc 43037
>emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in linkage group 20, complete sequence Length = 214404 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 202907 gcggcgcctcttcttggcag 202926
>gb|AY674000.1| Rattus norvegicus doublecortin kinase-2 (Dck2) mRNA, complete cds; transcript variant 4 Length = 2304 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 221 gccttcttggccttcttctc 202
>gb|AY673998.1| Rattus norvegicus doublecortin kinase-2 (Dck2) mRNA, complete cds; transcript variant 2 Length = 3458 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 301 gccttcttggccttcttctc 282
>gb|AY673997.1| Rattus norvegicus doublecortin kinase-2 (Dck2) mRNA, complete cds; transcript variant 1 Length = 2317 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 221 gccttcttggccttcttctc 202
>emb|CR790363.24| Zebrafish DNA sequence from clone DKEY-175D9 in linkage group 3, complete sequence Length = 139765 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 33223 gtgcggcgcctcttcttggc 33204
>gb|BC060192.1| Mus musculus doublecortin and CaM kinase-like 2, mRNA (cDNA clone IMAGE:6844083) Length = 4939 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 239 gccttcttggccttcttctc 220
>dbj|AB086374.1| Sesbania rostrata srha5 mRNA for plasma membrane H+-ATPase, complete cds Length = 3376 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 acttcaggcttctcagccctcttcttct 377 ||||||||||||||| || ||||||||| Sbjct: 305 acttcaggcttctcacccatcttcttct 278
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ctttcaacgcttgccgccgc 185 |||||||||||||||||||| Sbjct: 3814177 ctttcaacgcttgccgccgc 3814158
>dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-793A3, complete sequence Length = 222596 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 gcctcagcatggatgtcctttctt 475 |||||||| ||||||||||||||| Sbjct: 36670 gcctcagcctggatgtcctttctt 36647
>gb|AC006138.1|AC006138 Homo sapiens clone UWGC:y54c194 from 6p21, complete sequence Length = 37448 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 29753 ctctgccttcttggccttct 29772
>emb|BX005250.7| Zebrafish DNA sequence from clone DKEY-35H6 in linkage group 14, complete sequence Length = 281427 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 259751 gtgcggcgcctcttcttggc 259732 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 39561 gcggcgcctcttcttggcag 39542
>gb|AF027302.1|AF027302 Homo sapiens TNF-alpha stimulated ABC protein (ABC50) mRNA, complete cds Length = 3141 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 769 ctctgccttcttggccttct 750
>dbj|AB088096.1| Homo sapiens ABC50 gene for ATP-binding cassette, sub-family F (GCN20), member 1, complete cds Length = 21843 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 9685 ctctgccttcttggccttct 9666
>ref|NM_001037989.1| Takifugu rubripes serine/threonine protein kinase RAF1 (raf1), mRNA Length = 2106 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 tctcatccttggtcttcttgatgc 305 |||||||||||| ||||||||||| Sbjct: 1899 tctcatccttggacttcttgatgc 1876
>emb|CR550307.8| Zebrafish DNA sequence from clone DKEY-174E10 in linkage group 11, complete sequence Length = 178645 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gtgcggcgcctcttcttggc 450 |||||||||||||||||||| Sbjct: 28627 gtgcggcgcctcttcttggc 28608
>emb|BX005367.10| Zebrafish DNA sequence from clone DKEY-97L20 in linkage group 22, complete sequence Length = 243709 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 213259 gcggcgcctcttcttggcag 213240
>emb|AL844192.12| Zebrafish DNA sequence from clone DKEY-245I2, complete sequence Length = 219054 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcggcgcctcttcttggcag 452 |||||||||||||||||||| Sbjct: 99249 gcggcgcctcttcttggcag 99230
>dbj|AB209181.1| Homo sapiens mRNA for Hypothetical protein DKFZp761I032 variant protein Length = 4235 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gccttcttggccttcttctc 285 |||||||||||||||||||| Sbjct: 975 gccttcttggccttcttctc 956
>gb|AC164643.4| Mus musculus BAC clone RP23-254F23 from chromosome 7, complete sequence Length = 232098 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tcttctcatccttggtcttc 298 |||||||||||||||||||| Sbjct: 26523 tcttctcatccttggtcttc 26542
>gb|AC165077.3| Mus musculus BAC clone RP24-369J8 from chromosome 7, complete sequence Length = 179228 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tcttctcatccttggtcttc 298 |||||||||||||||||||| Sbjct: 49499 tcttctcatccttggtcttc 49480
>dbj|AB023052.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:TS1B10, complete sequence Length = 28719 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctctgccttcttggccttct 281 |||||||||||||||||||| Sbjct: 10901 ctctgccttcttggccttct 10920 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,852,112 Number of Sequences: 3902068 Number of extensions: 4852112 Number of successful extensions: 127617 Number of sequences better than 10.0: 242 Number of HSP's better than 10.0 without gapping: 242 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126755 Number of HSP's gapped (non-prelim): 851 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
