ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BDLF2_EBV (P03225) Protein BDLF2 35 0.14
2Y1792_ARCFU (O28482) Hypothetical protein AF1792 30 5.9
3DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7) 30 5.9
4SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor 30 5.9

>BDLF2_EBV (P03225) Protein BDLF2|
          Length = 420

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -3

Query: 194 LEVYYIYLCCNVCDLLLATAGYNPRFVRKFTSISLYVL----NNLFWCLSGTRKHNPFCA 27
           L   +IY CC +  L L   G+NP F+  F  +   VL     +    LS     NPFC 
Sbjct: 187 LSFVFIYYCCYLAFLALLAFGFNPLFLPSFMPVGAKVLRGKGRDFGVPLSYGCPTNPFCK 246

Query: 26  IIXLV 12
           +  L+
Sbjct: 247 VYTLI 251



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>Y1792_ARCFU (O28482) Hypothetical protein AF1792|
          Length = 137

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -3

Query: 401 EGFDRRNSNPVTIGALCASALIG*TVYHTENGQCVAAVVETKCRLVLLVLIYGYYEF 231
           E   RR     +IGA  + A++     HTE    +A      C LVL ++ YGYY F
Sbjct: 79  ERASRRTVEIFSIGAALSGAVMLALDLHTE--AALALEFAVCCVLVLYLIFYGYYSF 133



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>DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7)|
          Length = 947

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 188 VYYIYLCCNVCDLLLATAGYNP 123
           +YY+    N CD LL TAGY P
Sbjct: 899 LYYMKSVVNACDQLLVTAGYGP 920



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>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor|
          Length = 445

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 422 SAYNSSPSNSPKINHPPTSNWP 487
           +A++SSP++ P+   PPT +WP
Sbjct: 119 AAFSSSPASPPRPGMPPTRSWP 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,035,934
Number of Sequences: 219361
Number of extensions: 1836065
Number of successful extensions: 4423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4421
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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