ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2n16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC5A5_HUMAN (Q92911) Sodium/iodide cotransporter (Na(+)/I(-) cot... 29 5.6
2ILVB_SCHPO (P36620) Acetolactate synthase, mitochondrial precurs... 29 7.3
3RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) ... 28 9.6

>SC5A5_HUMAN (Q92911) Sodium/iodide cotransporter (Na(+)/I(-) cotransporter)|
           (Sodium-iodide symporter) (Na(+)/I(-)-symporter)
          Length = 643

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 38  VSSRTHGATSKAEAPSNQNKQAPS--WTSTRSALALHFTAYGYIYY 169
           +S    G    A  P+N + +APS    ++R ALA  F A  Y+YY
Sbjct: 486 LSVNASGLLDPALLPANDSSRAPSSGMDASRPALADSFYAISYLYY 531



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>ILVB_SCHPO (P36620) Acetolactate synthase, mitochondrial precursor (EC|
           2.2.1.6) (Acetohydroxy-acid synthase) (ALS) (AHAS)
          Length = 669

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 91  KQTSSVLDEYSQRTGTAFHSLWIHLLQIWTG*KGRVTA 204
           KQTS + D+ +  TG   H +W      WT     VT+
Sbjct: 480 KQTSDIKDKVTITTGVGAHQMWAATFYRWTKPSSLVTS 517



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>RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4)
          Length = 1216

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 64  IQGRGTVESKQTSSVLDEYSQRTGTA 141
           +Q  G  + KQ  S L+E +QRTGTA
Sbjct: 417 VQEEGDRDDKQPISTLEEVAQRTGTA 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,115,296
Number of Sequences: 219361
Number of extensions: 1220008
Number of successful extensions: 2745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2742
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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